BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G60630.1
Length=2244
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486537 jgi|Araly1|486537|fgenesh2_kg.5__2529__AT3G60630.1 3217 0.0
Ahg483651 jgi|Araly1|483651|fgenesh2_kg.4__2711__AT2G45160.1 580 1e-164
> Ahg486537 jgi|Araly1|486537|fgenesh2_kg.5__2529__AT3G60630.1
Length=2195
Score = 3217 bits (1742), Expect = 0.0
Identities = 1920/2005 (96%), Gaps = 15/2005 (1%)
Strand=Plus/Plus
Query 233 AGATTGGTCATGCCCCTGCCCTTTGAGCAATTTCAAGGGAAGGGGGTTCTGGGTTTCTTA 292
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 199 AGATTGGTCATGCCCCTGCCCTTTGAGCAATTTCAAGGGAAGGGGGTTCTGGGTTTCTTA 258
Query 293 GATTCTTCTTCTTCTCCGGGATACAAAATCTGGGCTAATCCAGAGAAGCTCCATGGACGA 352
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 259 GATTCTTCTTCTTCTCCGGGATACAAAATCTGGGCTAATCCAGAGAAACTCCATGGACGA 318
Query 353 GTAGAAGAAGATCTCTGCTTTGTTGTCAACAATGGTGGTTTCTCGGAGCCGACGTCTGTT 412
||||| ||||||||||||||| |||| |||||||||||||||||||||||||||||||||
Sbjct 319 GTAGACGAAGATCTCTGCTTTATTGTTAACAATGGTGGTTTCTCGGAGCCGACGTCTGTT 378
Query 413 TTAGACTCTGTTAGAAGTCCAAGCCCTTTCGTCTCTTCTTCAACCACCACGCTGTCTTCT 472
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 379 TTAGACTCTGTTAGAAGTCCAAGCCCTTTCGTCTCTTCTTCAACCACCACGCTGTCTTCT 438
Query 473 TCTCACGGTGGTCCCAGCGGCGGCGGCGCTGCTGCTGCTACTTTTTCCGGCGCCGATGGG 532
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 439 TCTCACGGTGGTCCCAGCGGCGGCGGCGCTGCTGCTGCTACTTTTTCCGGCGCCGATGGG 498
Query 533 AAATGCGACCAAATGGGTTTCGAGGATCTCGATGGTGTTCTCTCCGGTGGCTCGCCGGGA 592
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 499 AAATGCGAACAAATGGGTTTCGAGGATCTCGATGGTGTTCTCTCCGGTGGCTCGCCGGGA 558
Query 593 CAAGAACAGAGTATTTTTAGATTAATCATGGCTGGCGATGTAGTGGATCCGGGTTCGGAG 652
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 559 CAAGAACAGAGTATTTTTAGATTAATCATGGCTGGTGATGTAGTGGATCCGGGTTCTGAG 618
Query 653 TTTGTGGGTTTCGACATCGGTTCTGGATCCGACCCGGTTATTGATAATCCTAATCCACTC 712
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 619 TTTGTGGGTTTCGACACCGGTTCTGGATCCGACCCGGTTATTGATAATCCTAATCCACTC 678
Query 713 TTTGGATATGGCTTCCCTTTTCAAAACGCACCGGAAGAAGAAAAGTTTCAGATTTCAATA 772
||||| ||||||||||||||||| || ||||||||||||| ||||||||||||||||||
Sbjct 679 TTTGGCTATGGCTTCCCTTTTCACGACCCACCGGAAGAAGAGAAGTTTCAGATTTCAATA 738
Query 773 AACCCAAATCCGGGTTTCTTCTCGGATCCTCCGTCGTCTCCTCCTGCGAAACGGCTCAAT 832
|||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 739 AACCCAAATCCGAGTTTCTTCTCGGATCCTCCGTCGTCTCCTCCTGCGAAAAGGCTCAAT 798
Query 833 TCGGGTCAACCCGGATCTCAACACCTCCA------GTGGGTTTTCCCGTTCTCGGATCCG 886
||||||||||||||||||||||||| ||| ||||| |||||||||||||||||||
Sbjct 799 TCGGGTCAACCCGGATCTCAACACCACCACCAACAGTGGGGTTTCCCGTTCTCGGATCCG 858
Query 887 GGTCACGAATCTCACGACCCGTTTCTCACACCGCCAAAGATAGCCGGAGAAGACCAAAAC 946
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 859 GGTCACGAATCTCACGACCCGTTTCTCACGCCGCCAAAGATAGCCGGAGAAGACCAAAAC 918
Query 947 GACCAAGACCAGTCAGCGGTAATCATCGACCAGCTATTCTCTGCGGCGGCGGAGCTCACC 1006
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 919 GACCAAGACCAGTCAACGGTAATCATCGACCAGCTATTCTCTGCGGCGGCGGAGCTCACA 978
Query 1007 ACAAACGGCGGAGATAACAATCCCGTTCTCGCGCAAGGGATATTGGCGCGGCTCAATCAC 1066
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 979 ACAAACGGCGGAGATAACAATCCCGTTCTCGCGCAAGGGATATTGGCGCGGCTCAATCAC 1038
Query 1067 AACCTTAACAACAACAACGACGACACTAACAACAATCCTAAACCTCCGTTCCACAGAGCA 1126
||||||||||||||| ||| || |||||||||||||||||||||||| | ||||||
Sbjct 1039 AACCTTAACAACAAC---GAC-AC--TAACAACAATCCTAAACCTCCGTTTCGTAGAGCA 1092
Query 1127 GCTTCGTATATAACAGAAGCTCTTCACTCTCTCCTTCAAGACTCATCATTATCACCACCG 1186
|||||||||||||| ||||||||||||||||| |||||||||||||||| ||||||||||
Sbjct 1093 GCTTCGTATATAACCGAAGCTCTTCACTCTCTTCTTCAAGACTCATCATCATCACCACCG 1152
Query 1187 TCTCTCTCACCTCCTCAAAACCTAATCTTTCGGATCGCAGCTTACAGAGCTTTCTCAGAA 1246
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 1153 TCTCTCTCACCTCCTCAAAACCTAATCTTTCGAATCGCAGCTTACAGAGCTTTCTCGGAA 1212
Query 1247 ACGTCACCGTTTCTTCAATTCGTCAACTTCACAGCAAACCAAACGATTCTCGAGTCATTC 1306
|||||||||||||||||||||||||| |||||||||||||| |||||||| ||||| |||
Sbjct 1213 ACGTCACCGTTTCTTCAATTCGTCAATTTCACAGCAAACCAGACGATTCTTGAGTCCTTC 1272
Query 1307 GAAGGGTTTGATCGGATCCACATTGTCGATTTCGATATCGGTTATGGAGGTCAATGGGCG 1366
||||| |||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1273 GAAGGATTTGATCGAATCCACATTGTCGATTTCGATATCGGTTACGGAGGTCAATGGGCG 1332
Query 1367 TCTCTGATTCAAGAGCTCGCCGGAAAAAGAAACAGATCTTCATCAGCTCCGTCGCTAAAG 1426
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1333 TCTCTGATTCAAGAGCTCGCCGGAAAAAGAAACAGATCTTCGTCAGCTCCGTCGCTAAAG 1392
Query 1427 ATTACAGCTTTCGCTTCTCCTTCAACTGTCTCCGACGAATTCGAGCTCCGATTCACTGAA 1486
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1393 ATTACAGCTTTCGCTTCTCCTTCAACTGTCTCCGACGAATTCGAGCTCCGATTCACTGAA 1452
Query 1487 GAAAATCTCAGAAGCTTCGCCGGCGAAACAGGTGTCTCCTTCGAAATCGAGCTCTTAAAC 1546
|||||||||||||| ||||| || ||||| || ||||||||||||||||||||||| |||
Sbjct 1453 GAAAATCTCAGAAGTTTCGCTGGAGAAACCGGAGTCTCCTTCGAAATCGAGCTCTTGAAC 1512
Query 1547 ATGGAGATTCTCTTGAATCCAACTTATTGGCCACTGTCTTTATTCCGATCATCGGAGAAA 1606
||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||
Sbjct 1513 ATGGAGATTCTCTTGAATCCAACTTATTGGCCACTCTCTTTACTCCGATCATCGGAGAAA 1572
Query 1607 GAAGCAATCGCTGTGAATCTCCCAATCAGCTCCATGGTCTCCGGTTACCTCCCATTGATA 1666
|||||||| ||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 1573 GAAGCAATTGCTGTGAATCTTCCAATCAGCTCCATTGTCTCCGGTTACCTCCCATTGATA 1632
Query 1667 CTTCGTTTCCTCAAGCAAATCTCACCAAACGTCGTCGTTTGCTCAGACAGAAGCTGCGAC 1726
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1633 CTTCGTTTCCTCAAGCAAATCTCACCAAACGTCGTCGTTTGCTCAGATAGAAGCTGCGAC 1692
Query 1727 CGTAACAACGACGCGCCGTTCCCTAACGGTGTGATTAACGCGCTTCAGTACTACACATCT 1786
|| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1693 CGCAACAACGACGCGCCGTTCCCTAACGGTGTGATTAACGCGCTCCAGTACTACACATCT 1752
Query 1787 CTGCTCGAGTCTCTCGACTCTGGGAATCTGAATAATGCGGAAGCTGCTACGAGTATTGAG 1846
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1753 CTGCTCGAGTCTCTCGACTCTGGGAATCTGAATAATGCGGAAGCTGCTTCGAGTATTGAG 1812
Query 1847 AGGTTTTGTGTGCAACCGTCGATACAGAAACTGTTGACGAATCGTTACCGTTGGATGGAG 1906
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1813 AGGTTTTGTGTGCAACCGTCGATACAGAAACTGTTGACGAATCGTTACCGTTGGATGCAG 1872
Query 1907 AGATCACCGCCGTGGAGAAGCTTATTTGGGCAATGTGGGTTTACTCCTGTGACGCTGAGT 1966
||||| ||||||||||||||||| |||||||||||||||||| |||| ||||||||||||
Sbjct 1873 AGATCGCCGCCGTGGAGAAGCTTGTTTGGGCAATGTGGGTTTTCTCCGGTGACGCTGAGT 1932
Query 1967 CAGACGGCGGAGACACAAGCGGAGTATTTGTTGCAGAGGAATCCAATGAGAGGGTTTCAC 2026
||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 1933 CAGACGGCGGAGACACAGGCGGAGTATTTGTTGCAGAGGAATCCGATGAGAGGGTTTCAC 1992
Query 2027 TTGGAGAAGAGACAGTCTTCGTCGCCTTCACTTGTCTTGTGTTGGCAGAGGAAAGAACTT 2086
||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||
Sbjct 1993 TTGGAGAAGAGACAGTCATCGTCGTCTTCACTTGTCTTGTGTTGGCAGAGGAAAGAACTT 2052
Query 2087 GTTACTGTCTCAGCTTGGAAATGTTAAGACGAAAAAGGAGGATATTTTCACGGTTTAATT 2146
||||||||||||||||||||||||| ||| |||||| | ||||||| || |||| ||||
Sbjct 2053 GTTACTGTCTCAGCTTGGAAATGTTGAGAGGAAAAATTATGATATTT-CAGGGTTCAATT 2111
Query 2147 TTCTTTT-TGTAGCTTTTCAATTTGGGTTAGATCACGTTTTAATATGTTTGATTGTGATG 2205
||||||| | |||||||| ||||||||||| |||| ||||||||||||||||||||||||
Sbjct 2112 TTCTTTTCT-TAGCTTTTTAATTTGGGTTATATCATGTTTTAATATGTTTGATTGTGATG 2170
Query 2206 TTAACCAATCAAATGATATATATAT 2230
|||||||||||||||||||||||||
Sbjct 2171 TTAACCAATCAAATGATATATATAT 2195
Score = 327 bits (177), Expect = 2e-88
Identities = 192/199 (96%), Gaps = 2/199 (1%)
Strand=Plus/Plus
Query 1 AAAAGAGAGCATTTTTTATGAAGATCATCACTTTGGAATGTTGTTGGAATCATCCAGAGT 60
|||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1 AAAAGAGAGCATTTTTGATGAAGATCATCACTTTGGAATGTTGTTGCAATCATCCAGAGT 60
Query 61 CAATATACATAAGCAAC-GAGAAGAAAGATTGTTATTAATACCGAGTGTGAGATAATGTG 119
|||||||||||||| || | ||||||||||||||||||| | ||||||||||||||||||
Sbjct 61 CAATATACATAAGC-ACAGTGAAGAAAGATTGTTATTAACAACGAGTGTGAGATAATGTG 119
Query 120 GGCGCCAATTTCAGTTTCAAGCTTTCATCTTCGTCTTCCTCTTTAAGTTCTGAGATCTAG 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 GGCGCCAATTTCAGTTTCAAGCTTTCATCTTCGTCTTCCTCTTTAAGTTCTGAGATCTAG 179
Query 180 GGTTTTTCTGGGTTTCTTT 198
|||||||||||||||||||
Sbjct 180 GGTTTTTCTGGGTTTCTTT 198
> Ahg483651 jgi|Araly1|483651|fgenesh2_kg.4__2711__AT2G45160.1
Length=2185
Score = 580 bits (314), Expect = 1e-164
Identities = 728/917 (79%), Gaps = 71/917 (8%)
Strand=Plus/Plus
Query 1220 ATCGCAGCTTACAGAGCTTTCTCAGAAACGTCACCGTTTCTTCAATTCGTCAACTTCACA 1279
||||| ||||||||| | ||||| ||||| || |||||||| |||||||| |||||||||
Sbjct 1087 ATCGCCGCTTACAGATCCTTCTCCGAAACCTCGCCGTTTCTCCAATTCGTTAACTTCACA 1146
Query 1280 GCAAACCAAACGATTCTCGAGTCAT---TCG-A--AGGGTTTGATCGGATCCACATTGTC 1333
|| || ||| ||||||| ||||| | || | |||||||||||| ||||||||| ||
Sbjct 1147 GCGAATCAATCGATTCTTGAGTCCTGCAACGAATCAGGGTTTGATCGAATCCACATTATC 1206
Query 1334 GATTTCGATATCGGTTATGGAGGTCAATGGGCGTCTCTGATTCAAGAGCTCG---CCGGA 1390
|||||||| | || |||||||| |||||| | ||||| || ||||| |||| |||||
Sbjct 1207 GATTTCGACGTTGGATATGGAGGACAATGGTCATCTCTAATGCAAGAACTCGCCCCCGGA 1266
Query 1391 AAAAGAA-ACAGATCTTCATCAGC-TCCGTCGCTAAAGATT-ACAG-CTTTCGCT--T-C 1443
||||| | ||| || ||| | | || || || ||| |||| |||| ||| | |
Sbjct 1267 GGAAGAAGA-AGA--AACA-GAGCAT-CATCTCTGAA-ATTAACAGTCTTT-GCTCCTCC 1319
Query 1444 TCCTTCAACTGTCTCCGACGAATTCGAGCTCCGATTCACTGAAGAAAATCTCAGAAGC-T 1502
||||||||| ||||||||||| |||||||||||||| || || |||||||||| || | |
Sbjct 1320 TCCTTCAACAGTCTCCGACGAGTTCGAGCTCCGATTTACGGAGGAAAATCTCA-AAACTT 1378
Query 1503 TCGCCGGCGAA-AC-AGGTGTCTCCTTCGAAATCGAGCT-CTTAAACATGGAGATTC-TC 1558
| ||||| ||| | || | || | ||||| |||||| | | ||| ||| ||| ||| ||
Sbjct 1379 TTGCCGGAGAAGTCAAGAT-TC-CGTTCGAGATCGAGTTGC-TAAGCATCGAGCTTCTTC 1435
Query 1559 TTGAATCCAACTTATTGGCCACTGTCTTTATTCCGATCATCGGAGAAAGAAGCAATCGCT 1618
| || ||| |||||||||||| ||| | |||| |||||||| ||||||||||||||
Sbjct 1436 -TAAACCCATCTTATTGGCCAC--TCTCT-CTCCGTTCATCGGAAAAAGAAGCAATCGCA 1491
Query 1619 GTGAATC-TCCCAATCAGCTCCATGGTCTCCGGTTACCTCCCATTGATACTTCGTTTCCT 1677
||||||| |||| | | |||| | | |||||||||||| ||||| || || ||||||||
Sbjct 1492 GTGAATCTTCCC-GTAAACTCCGTCGCCTCCGGTTACCTTCCATTAATCCTCCGTTTCCT 1550
Query 1678 CAAGCAAATCTCACCAAACGTCGTCGTTTGCTCAGACAGAAGCTGCGACCGTAACAACGA 1737
||| |||||||||||||||||||||||||||||||||||| | || ||||||||| ||
Sbjct 1551 CAAACAAATCTCACCAAACGTCGTCGTTTGCTCAGACAGAGGATGTGACCGTAAC---GA 1607
Query 1738 CGCGCCGTTCCCTAACGGTGTGATTAACGCGCTTCAGTACTACAC-ATCTCTGCTCGAGT 1796
||||||||| || |||| ||||| |||||||||||||| |||| | |||||| ||||
Sbjct 1608 CGCGCCGTTTCCAAACGCCGTGATCCACGCGCTTCAGTACCACACTAG-TCTGCTTGAGT 1666
Query 1797 CTCTCGACT-CTGGGAATCTGAAT-AATG-CGGAAGCTGCTACGAGTATTGAGAGGTTTT 1853
|||| || | || |||| ||| || | || | | | | ||||| ||||||||||
Sbjct 1667 CTCTGGA-TGCT---AATCAGAACCAA-GACG-AT--T-C-A--AGTATCGAGAGGTTTT 1714
Query 1854 GTGTGCAACCGTCGATACAGAAACTGTTGACGAATCGTTACCGTTGGATGGAGAGATCAC 1913
| || ||||| ||||| |||| ||||||| ||| || |||||||||| || ||||| |
Sbjct 1715 GGGTTCAACCATCGATTGAGAAGCTGTTGATGAAACGACACCGTTGGATTGAAAGATCTC 1774
Query 1914 CGCCGTGGAGAAGCTTATTTGGGCAATGTGGGTTTACTCCTGTGACGC-TGAGTCAGACG 1972
| |||||||||||||| ||| |||||||||||| |||| | || | |||||||||||
Sbjct 1775 CACCGTGGAGAAGCTTGTTTACACAATGTGGGTTTTCTCCGGCGA-GTATGAGTCAGACG 1833
Query 1973 GCGGAGACACAAGCGGAGTATTTGTTGCAGAGGAATCCAATGAGAGGGTTTCAC-TTGGA 2031
|||||| | || ||||||| |||||||||||||||||| |||||||||||||| ||| |
Sbjct 1834 GCGGAGGCTCAGGCGGAGTGTTTGTTGCAGAGGAATCCGGTGAGAGGGTTTCACGTTG-A 1892
Query 2032 GAAGAGACAGTCTTCGTCGCCTTCACTTGTCTTGTGTTGGCAGAGGAAAGAACTTGTTAC 2091
||| ||||||||||| ||||||| |||||||||| |||||||||||||||||
Sbjct 1893 GAAAAGACAGTCTTC---------ACTTGTCATGTGTTGGCAAAGGAAAGAACTTGTTAC 1943
Query 2092 TGTCTCAGCTTGGAAAT 2108
|||||| ||||||||||
Sbjct 1944 TGTCTCTGCTTGGAAAT 1960
Score = 71.3 bits (38), Expect = 3e-11
Identities = 38/38 (100%), Gaps = 0/38 (0%)
Strand=Plus/Plus
Query 1029 CCGTTCTCGCGCAAGGGATATTGGCGCGGCTCAATCAC 1066
||||||||||||||||||||||||||||||||||||||
Sbjct 920 CCGTTCTCGCGCAAGGGATATTGGCGCGGCTCAATCAC 957
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 84484163410
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5