BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G60640.1
Length=643
Score E
Sequences producing significant alignments: (Bits) Value
Ahg939108 jgi|Araly1|939108|scaffold_503299.1 431 3e-120
> Ahg939108 jgi|Araly1|939108|scaffold_503299.1
Length=323
Score = 431 bits (233), Expect = 3e-120
Identities = 258/270 (96%), Gaps = 2/270 (1%)
Strand=Plus/Plus
Query 88 AAGATGAGTAAC-GTCAGCTTCAGGCAGGATCATGATTTCGAGAAGAGGAAAGCTGAGGC 146
||||||||| || | |||||||| ||||||||||||||||||||| ||||||||||||||
Sbjct 19 AAGATGAGT-ACTGGCAGCTTCAAGCAGGATCATGATTTCGAGAAAAGGAAAGCTGAGGC 77
Query 147 TTTAAGGATCAGAGAGAAGTATTCTGACAGAGTCCCGGTGATTGTGGAGAAGTCAGAGAA 206
||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||
Sbjct 78 TTTAAGGATCAGAGACAAGTATCCTGACAGAGTCCCGGTGATTGTGGAGAAGTCAGAGAA 137
Query 207 AAGTGATATCCCAAACATTGACAAGAAGAAATACCTTGTCCCAGCTGATCTAACGGTAGG 266
|||||||||||||||||||||||||||||||||||| ||||||||||||||||| || ||
Sbjct 138 AAGTGATATCCCAAACATTGACAAGAAGAAATACCTCGTCCCAGCTGATCTAACCGTTGG 197
Query 267 CCAGTTTGTGTATGTGATTCGTAAGAGAATCCAACTTAGTGCAGAGAAAGCTATCTTCAT 326
|||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 198 CCAGTTTGTGTATGTGATTCGTAAAAGAATCCAACTTAGTGCGGAGAAAGCTATCTTCAT 257
Query 327 CTTTGTTGATAATGTTCTTCCTCCCACCGG 356
||||||||||||||||||||||||||||||
Sbjct 258 CTTTGTTGATAATGTTCTTCCTCCCACCGG 287
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23559962706
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5