BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G60650.1
Length=324
Score E
Sequences producing significant alignments: (Bits) Value
Ahg349127 jgi|Araly1|349127|fgenesh1_pg.C_scaffold_5002519 424 3e-118
> Ahg349127 jgi|Araly1|349127|fgenesh1_pg.C_scaffold_5002519
Length=339
Score = 424 bits (229), Expect = 3e-118
Identities = 275/296 (93%), Gaps = 7/296 (2%)
Strand=Plus/Plus
Query 34 AATGAAGAGATT-ACAAAACTAGAAGCTCCATCAACAAACAAGACGAACACCTTATTGAG 92
||||| |||||| | |||||||||||||||||||||||||||||||| |||| |||| ||
Sbjct 46 AATGACGAGATTGA-AAAACTAGAAGCTCCATCAACAAACAAGACGAGCACCGTATTTAG 104
Query 93 CCAATCACATGCGGTAGTTAATCATGGTG--A-TAATGGTCAGATCAACGGGAAGAAGAC 149
|||| ||||||| |||||||||||||||| | ||||||||||||||||||||||| |||
Sbjct 105 CCAAGCACATGCCGTAGTTAATCATGGTGATATTAATGGTCAGATCAACGGGAAGAGGAC 164
Query 150 GAAGGA-AATTCACAGAGTAAAACGAGCTTCAGACAAAAAGGTGTCGTCTAAAAGAGTCT 208
|||||| | ||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 165 GAAGGACGA-TCACAGAGTAAAACGAGCTTCAGACAAGAAGGTGTCGTCTAAAAGAGTCT 223
Query 209 CAAGAACTTGGAAAATCCCTAAGTATCCAAAGAAGCAGCCTAAATCAGATCAAGAACATC 268
| ||||| |||||||| ||||||||||||||||||||||||| |||||||||||||||||
Sbjct 224 CCAGAACATGGAAAATTCCTAAGTATCCAAAGAAGCAGCCTAGATCAGATCAAGAACATC 283
Query 269 CGGGTTTCAATCTTGATTATATGCAGCCCACTACACACCCGCCTCATCATAATTGA 324
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 284 CCGGTTTCAATCTTGATTATATGCAGCCCACTACACACCCGCCTCATCATAATTGA 339
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 11446676700
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5