BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G60670.1
Length=1018
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486540 jgi|Araly1|486540|fgenesh2_kg.5__2532__AT3G60670.1 1443 0.0
> Ahg486540 jgi|Araly1|486540|fgenesh2_kg.5__2532__AT3G60670.1
Length=1007
Score = 1443 bits (781), Expect = 0.0
Identities = 917/979 (94%), Gaps = 23/979 (2%)
Strand=Plus/Plus
Query 54 AAAACCACCTCCCAGTGTAGATAACCAGAAGAAGATAAGCCAAGATGGAATCTGGAGAAT 113
|||| ||||||||||||||||||| |||||||||| || || | ||||||||||||||||
Sbjct 37 AAAA-CACCTCCCAGTGTAGATAAACAGAAGAAGAGAATCC-A-ATGGAATCTGGAGAAT 93
Query 114 TTCCTGCATGGCTTGAGGTTCTGTTAAAAGACAAGTTTTTCAACGCTTGTTTGGATCATG 173
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 94 TTCCTGCATGGCTTGAGGTTTTGTTAAAAGACAAGTTTTTCAACGCTTGTTTGGATCATG 153
Query 174 AAGATGATAAGAAGAACGAGAAGAACATATTATGTATCGATTGTTGTCTTACCATCTGTC 233
|||||| ||||||||||||||||||||| |||||||||||||||||||||| ||||||||
Sbjct 154 AAGATGTTAAGAAGAACGAGAAGAACATTTTATGTATCGATTGTTGTCTTAGCATCTGTC 213
Query 234 CTCACTGTCTCTCTTCTCATACCTCTCATCGTCTTCTTCAGATAAGAAGATACGTGTATA 293
|||||||||||||||| |||||| |||||||||| |||||||||||||||||||||||||
Sbjct 214 CTCACTGTCTCTCTTCACATACCACTCATCGTCTCCTTCAGATAAGAAGATACGTGTATA 273
Query 294 GAGACGTTTTGAGGGTTGAAGATGGTTCTAAGCTAATGGATTGCTCTTTAATTCAGCCAT 353
|||||||||||||||| |||||||| || |||||||||||||||||||||||||||||||
Sbjct 274 GAGACGTTTTGAGGGTAGAAGATGGCTCGAAGCTAATGGATTGCTCTTTAATTCAGCCAT 333
Query 354 ACACAACGAACAGTTCAAAAGTTGTGTTCATCAATGAACGGCCTCAGTCTCGACAATTTC 413
||| |||||||||||||||||||||||||||||||||| | |||||||||||||| ||||
Sbjct 334 ACATAACGAACAGTTCAAAAGTTGTGTTCATCAATGAAAGACCTCAGTCTCGACAGTTTC 393
Query 414 GTGGTTCCGGTAACATTTGTATCACCTGTGACCGGAGTCTCCAGTCTCCTTACCTCTTCT 473
||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 394 GTGGTTCCGGTAACATTTGCATCACCTGCGACCGGAGTCTCCAGTCTCCTTACCTCTTCT 453
Query 474 GCTGTCTCTCCTGCAAGATTAGTGACGTCATAATGAGACAAAGAGGACTCTCAGGGTTTC 533
||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 454 GCTCTCTCTCCTGCAAGATTAGTGACGTCATAATGAGACAAAGAGGACTCGCAGGGTTTC 513
Query 534 TCCGCGTCTGCAACGTTCTTGATTTAACCGACGAAGTCACGACAACGACACCGAGTTCCA 593
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 514 TCCGCGTCTGCAACGTTCTTGATTTAACCGACGAAGTCACGACAACGACGCCGAGTTCCA 573
Query 594 CTCTCGAGCCCACCGGGTCGAACCGAACATCTTCCGAGTCAAG-TGGTAACGAAGGAGAA 652
||||||| || |||||||||| ||||||| ||||||||||| | |||||||| | ||||
Sbjct 574 CTCTCGAACCAACCGGGTCGACCCGAACAACTTCCGAGTCA-GCTGGTAACG--G-AGAA 629
Query 653 GACATGTTCTGGTGTCAGGCGCTCGCTTGCACCGCCACTACTGAAATCGTTAGGAAGAAA 712
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 630 GACATGTTCTGGTGTCAGGCGCTCGCTTGCACCGCCACTACTGAAATCGTTCGGAAGAAA 689
Query 713 AGAAGCAGCTTGTCGACGACTTGCAGGAGAGTCACGGAGGTGGTTTCAACGACTAACACG 772
|||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 690 AGAAGCAGCTTGTCGACGACTTGCCGGAGAGTCACGGAGGTGGTTTCAACGACTGACACG 749
Query 773 GAAGCTCCGGTGAACTTTTTAAACCGTCGGAAGAAT-C-C-GCCGCAACGCGCCCCGCTT 829
|||||||||||||||||||||||||| ||||||||| | | ||||||||| || |||||
Sbjct 750 GAAGCTCCGGTGAACTTTTTAAACCGACGGAAGAATACGCCGCCGCAACGAGCTCCGCTC 809
Query 830 TATTAACTCGTGACGTTTGGCGAAATTTGGTTGGTCCAAGT-GGTAAGTAGAATGAATAC 888
|||||||||||||| ||||| ||||||||||||||| |||| ||||||||||||||||||
Sbjct 810 TATTAACTCGTGACATTTGGTGAAATTTGGTTGGTCGAAGTTGGTAAGTAGAATGAATAC 869
Query 889 ACGTAA-CTACTATAGTCT-TATTTTATATTGTTAATCAATATCTCTAAATAACGAATCG 946
|||||| |||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 870 ACGTAAACTACTATAGTCTATATTTTATATTGTTAATCAATATCTCTAAATATCGAATCG 929
Query 947 AATTTT-AGGttttttt-AA---GAAAT---GGAATTAAGAATAGTTGAAAAGATCTCTC 998
|||||| |||||||| || ||||| |||||||| ||||||||||||||||||||
Sbjct 930 AATTTTTAGGTTTTTAAGAAAATGAAATCATGGAATTAA-AATAGTTGAAAAGATCTCTC 988
Query 999 CTGGTTTTGTCTGACTCTG 1017
|||||||||||||||||||
Sbjct 989 CTGGTTTTGTCTGACTCTG 1007
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37856056581
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5