BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G60680.1
Length=2083
Score E
Sequences producing significant alignments: (Bits) Value
Ahg939113 jgi|Araly1|939113|scaffold_503304.1 2187 0.0
> Ahg939113 jgi|Araly1|939113|scaffold_503304.1
Length=1526
Score = 2187 bits (1184), Expect = 0.0
Identities = 1443/1558 (93%), Gaps = 58/1558 (4%)
Strand=Plus/Plus
Query 273 GCGTATTTTGAGCGATGCGGGAAGTGGAAACAACGGCAAT-----CA-CAGCAG---CTC 323
||| |||| ||| ||||||||||||||||||| ||||||| || |||||| |||
Sbjct 8 GCG-ATTTAGAGAGATGCGGGAAGTGGAAACATCGGCAATCACAGCAGCAGCAGCTCCTC 66
Query 324 CTCCACAATTCTCTCAAATGTTTCAGAAATTAGCCATGGCCGTCAAGACCAAGACCTACG 383
||||||||||||||||||||||||||||| |||||||||| ||||| |||||||||||||
Sbjct 67 CTCCACAATTCTCTCAAATGTTTCAGAAACTAGCCATGGCGGTCAAAACCAAGACCTACG 126
Query 384 AGTTCTTCACCGAAGACGATAAT---GAGAG-A--ACCGATGCTGAGGGTTTCTCTCTTC 437
||||||||||||||||||||||| ||||| | ||||||||||||||||||||||| |
Sbjct 127 AGTTCTTCACCGAAGACGATAATGACGAGAGAACCACCGATGCTGAGGGTTTCTCTCTCC 186
Query 438 TCGATTCCTCCGAGGATTTTATCACCGATCAGAAAGTCGTCGTTCTTAAACCCGATAAGC 497
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 187 TCGACTCCTCCGAGGATTTTATCACCGATCAGAAAGTCGTCGTTCTTAAACCCGATAGGC 246
Query 498 CTCTTCTTAGTGCTTCTTCTCCGGGATCTCCTATTGAATCTCCGGTGAACGATGTTCAGA 557
||||||||| |||||||| ||| | || |||||||||||||||| |||||
Sbjct 247 CTCTTCTTA---CTTCTTCT------TCT--TCTT-CTTCTCCGGTGAACGATGCTCAGA 294
Query 558 CGA--A-GAATTTGGGTGTGGTAAGTGTTGTTAAACCTAATCAAAAGAAGCTTTCTCAGG 614
||| | ||||||||||| |||||||||| |||||| | || |||||
Sbjct 295 CGAGGAGGAATTTGGGTGCGGTAAGTGTTAATAAACC---T------AA------TCAGG 339
Query 615 TTAGGAAATTGGATACACAGATGGGATTGAGTTTGATTTCTTCTGTTTTCGCTACTGCTT 674
|||||||||||||||| ||| |||| |||||||||||||| |||||||||||||||||||
Sbjct 340 TTAGGAAATTGGATACCCAGTTGGGTTTGAGTTTGATTTCGTCTGTTTTCGCTACTGCTT 399
Query 675 CGTCTTTTGAAGCTTCGTATCTTCAATTGCAAGCTGCTCACGCGCCGTTTGTTGAGGAAA 734
||||||||||||||||||||||||||||||||||||||||||| || ||||||||| | |
Sbjct 400 CGTCTTTTGAAGCTTCGTATCTTCAATTGCAAGCTGCTCACGCCCCTTTTGTTGAGTATA 459
Query 735 ATGTCAAGGCTGCTGATAGAGCTCTCGTATCTAACCTCCAGAAATTGTCTGATTTGAAGC 794
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 460 ATGTCAAGGCTGCTGATAGAGCTCTCGTCTCTAACCTCCAGAAATTGTCTGATTTGAAGC 519
Query 795 AGTTTTATAGGAATTATCGCCAAAGTTTGGATTTTGAGTCTGATTTAGCTATTGGGTCTT 854
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 520 AGTTTTATAGGAATTATCGCCAAAGTTCGGATTTTGAGTCTGATTTAGCTATTGGGTCTT 579
Query 855 GCTTAGAATCTCGTGTTCAGGAGAATCAGAGCAAGCTTAGAGCTTTGGAAACCGTCTCAA 914
||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 580 GCTTAGAATCTCGGGTTCAGGAGAATCAGAGCAAGCTTAGAGCTTTGGAAACGGTCTCAA 639
Query 915 ATCGTTTACAAGCTGAGATGGATGCAAAGGATTTGCAGGTTTGGAGTCTGAGGAACAAAT 974
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 640 ATCGGTTACAAGCTGAGATGGATGCAAAGGATTTGCAGGTTTGGAGTCTGAGGAACAAAT 699
Query 975 TAGGTGAGATTCAGAAATCTACTTCCAAGTTGTCTAAGAGATTGTCTTCAAATTCATCGT 1034
||||||||||||||||||||| ||||||||| || |||||| |||||||||||||||| |
Sbjct 700 TAGGTGAGATTCAGAAATCTAATTCCAAGTTATCAAAGAGACTGTCTTCAAATTCATCAT 759
Query 1035 TGGATGTTCTGTTATCGGTTAGGGTTTTTGAGTCTCTGTTGTATGATGCCTTTAAAGCTA 1094
||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||
Sbjct 760 TGGATGTTCTGTTATCGGTTAGGGTTTATGAGTCTCTGTTGCATGATGCCTTTAAAGCTA 819
Query 1095 CTCAGAAATTCACTAAGATTCTGATTGAGTTGATGGAAAAAGCTGGGTGGGATTTGGATT 1154
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 820 CTCAGAAATTCACTAAGATTCTGATTGAGTTGATGGAAAAAGCTGGCTGGGATTTGGATT 879
Query 1155 TAGTGGCTAAGTCTGTTCATCCTGAGGTAGATTATGCTAAGGAGA-GACATAACCGGTAT 1213
||||||||||||||||||| |||||||||||||||||||| || | ||||||||||||||
Sbjct 880 TAGTGGCTAAGTCTGTTCACCCTGAGGTAGATTATGCTAA-GAAAGGACATAACCGGTAT 938
Query 1214 GCATTGTTGTCGTATGTTTGCTTGGGGATGTTTCGTGGTTTTGATGGAGAAGGATTTGAT 1273
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 939 GCATTGTTGTCGTATGTTTGCTTGGGGATGTTTCGTGGTTTTGATGGAGAAGGATTTGAT 998
Query 1274 CTAAATGAGAATGATTATGAAGAGTCTGAGAGAAGTTCTGTAGATTCTTCCTTGAGGGAA 1333
||||||||||||||| ||||||||| | ||||| | | |||||| |||||||||
Sbjct 999 CTAAATGAGAATGATGATGAAGAGTTTCAGAGA-G------A--TTCTTCGTTGAGGGAA 1049
Query 1334 TTGATGCAACATGTATCGAGTAATCCGATGGAGCTTCTTGATAGAGATAAAGATTGTGCA 1393
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1050 TTGATGCAACATGTATCGAGTAATCCGATGGAACTTCTTGATAGAGATAAAGATTGTGCA 1109
Query 1394 TTCTCTAGATTTTGCGATAAGAAGTATCACGAGCTGATTCATCCGAACATGGCATCTTCG 1453
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1110 TTCTCTAGATTTTGCGATAAGAAGTATCACGAGCTCATTCATCCGAACATGGCATCTTCG 1169
Query 1454 ATATTCAGTAACATGGATGAAAACGAAGCTGTGTTGAGTTCTTGGAGATCTTTGAGCACA 1513
||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||
Sbjct 1170 ATATTCAGTAACATGGATGAAAATGAAGCTGTGTTGAGTTCTTGGAGATCTCTGAGCACA 1229
Query 1514 TTCTATGAATCGTTTGTCACGATGGCTAGCTCGATTTGGACCCTTCACAAGTTAGCCTTG 1573
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1230 TTCTATGAATCGTTTGTCACTATGGCTAGCTCGATTTGGACCCTTCACAAGTTAGCCTTG 1289
Query 1574 TCCTTTGATCCTGCAGTTGAGATTTTCCAAGTTGAAAGCGGAGTGGAATTTTCGATTGTT 1633
|||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1290 TCCTTTGATCCTGCTGTTGAGATTTTCCAAGTTGAAAGCGGAGTGGATTTTTCGATTGTT 1349
Query 1634 TTCATGGAGAATGTCTTAAAAAGAAAACAAGATAAGAAGTTTTCGATGAGTCCTACTCGA 1693
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1350 TTCATGGAGAATGTCTTAAAAAGAAAACAAGATAAGAAGTTTTCGATGAATCCTACTCGA 1409
Query 1694 GCCAAAGTAGGATTCACAGTGGTTCCCGGGTTTAAAATCGGGTGCACCGTGATTCAGTGT 1753
||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||| |
Sbjct 1410 GCCAAAGTAGGATTCACAGTGGTTCCCGGTTTTAAAATCGGGTGCACAGTGATTCAGTCT 1469
Query 1754 CAAGTTTACCTTACCGGCGGCTCCAAAATGTAAATGAAAGAGACCGATGGTTAAGCCG 1811
||||||||||||| |||||||| |||| |||||||||| |||||||||||||||||||
Sbjct 1470 CAAGTTTACCTTAACGGCGGCTTCAAA-TGTAAATGAAGGAGACCGATGGTTAAGCCG 1526
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78351633965
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5