BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G60690.1
Length=829
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486542 jgi|Araly1|486542|fgenesh2_kg.5__2534__AT3G60690.1 931 0.0
> Ahg486542 jgi|Araly1|486542|fgenesh2_kg.5__2534__AT3G60690.1
Length=730
Score = 931 bits (504), Expect = 0.0
Identities = 627/683 (92%), Gaps = 22/683 (3%)
Strand=Plus/Plus
Query 89 AAACGGTTCTGTTCAAAACATTTTTCAAGCTCTGTTACTTTGTTTTTTCAACGATGAGGA 148
||||| |||||||||||||||||||||| |||| |||||||||||| |||||||||||||
Sbjct 22 AAACGATTCTGTTCAAAACATTTTTCAATCTCTCTTACTTTGTTTTGTCAACGATGAGGA 81
Query 149 AGTTAAGAGGAATCAAAATTAGAAGACCGATTAAACAAATCTCAAGATGGATCCTCCGGA 208
||||||||||||||| ||||||||||||||| ||| |||||||||||||||||||||||
Sbjct 82 GGTTAAGAGGAATCAAGATTAGAAGACCGATTCAACGAATCTCAAGATGGATCCTCCGGA 141
Query 209 GAATTAAGATTCGTCGTTCAAGATACACCCGGTTAAGCCCAAACCGCCCGGTTTGCAAGC 268
||||| || || || | |||||||||||||||||||| ||||| |||||||||||||
Sbjct 142 GAATTCGGA-TC--CG-T--AGATACACCCGGTTAAGCCCGAACCGACCGGTTTGCAAGC 195
Query 269 CGAGAGCCATCACAAAACTCATAAGTTGGGGTCGAAGTCTCACATCCCACAGCGCCAGGT 328
|||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 196 CGAGAGCCATCACAAAGCTAATAAGTTGGGGTCGAAGTCTCACATCCCACAGCGCCAGGT 255
Query 329 TTATTGGGTCTAAATGCTCCAATTCAGGGTACATACCAATTGGTCAAGAACCCATTCGAG 388
|| |||| |||||||| | ||| |||| ||||||||||||||||||||||| |||||||
Sbjct 256 TTCTTGGTTCTAAATGTTTAAATCCAGGATACATACCAATTGGTCAAGAACCGATTCGAG 315
Query 389 -AAAAGCCCGACCCGGTTCCGAAAGGTCACTCGGCGGTTTACATCGGTAAAAAAGACGGC 447
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 316 CAAAA-CCCGACCCGGTTCCGAAAGGTCACTCGGCGGTTTACATCGGTAAAAAAGACGGC 374
Query 448 GACTTTCAGAGAGTTTTGGTGCCTATCGTTTACTTTAACCATCCTCTGTTTGGTGAGCTT 507
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 375 GACTTTCAGAGAGTTTTGGTGCCTATCGTTTACTTTAACCATCCTCTGTTCGGTGAGCTT 434
Query 508 CTTAGAGAGGCTGAAGAAGAATTTGGGTTTT-CTCAAGAAGGTGGAATCACTATCCCTTG 566
|| |||||||| ||||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct 435 CTGAGAGAGGCAGAAGAAGAATTTGGGTTTTGC-CAAGAAGGTGGAATCACTATCCCTTG 493
Query 567 TCCTTACTCAGATTTCAAACGGGTCCAAACCCGAATTGAATCCGGGTCGGGTTTCTGTAA 626
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 494 TCCTTATTCAGATTTCAAACGGGTCCAAACCCGAATTGAATCCGGGTCGGGTTTCTGTAA 553
Query 627 ATTTCCCTGGAGCCGGCGGTGGCAATAACGACGGTGGAAGAAGATGATGATGATGAAAAA 686
| |||||||||||||||| ||||||||||||||||| ||||| |||||||||||||||
Sbjct 554 ACTTCCCTGGAGCCGGCGCCGGCAATAACGACGGTGG--GAAGAAGATGATGATGAAAAA 611
Query 687 GTTctttaactcttttttactattttctaccttt-tcac-ttttg--tt-----actatt 737
||| |||||||||||| |||||||||||||||| |||| |||| || ||| ||
Sbjct 612 GTTAATTAACTCTTTTT-ACTATTTTCTACCTTTGTCACCTTTTCACTTTTGTCACTCTT 670
Query 738 tttacccttttGTTAGATATGTA 760
|||||||||||||||||||||||
Sbjct 671 TTTACCCTTTTGTTAGATATGTA 693
Score = 69.4 bits (37), Expect = 4e-11
Identities = 37/37 (100%), Gaps = 0/37 (0%)
Strand=Plus/Plus
Query 790 AATTTAGGCGATAATGTAAATAATATAGAGATTTTTT 826
|||||||||||||||||||||||||||||||||||||
Sbjct 694 AATTTAGGCGATAATGTAAATAATATAGAGATTTTTT 730
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30650825268
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5