BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G60710.1

Length=963
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg486543 jgi|Araly1|486543|fgenesh2_kg.5__2535__AT3G60710.1         309    2e-83


> Ahg486543 jgi|Araly1|486543|fgenesh2_kg.5__2535__AT3G60710.1
Length=798

 Score =  309 bits (167),  Expect = 2e-83
 Identities = 262/305 (86%), Gaps = 18/305 (6%)
 Strand=Plus/Plus

Query  2    TGGAAGATTTGATAAGCCAATTGCCCAATGAGTTGCTGCAAGAGATACTCTTGAATCTTC  61
            |||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||
Sbjct  8    TGGAAGATTTGATAAGCCAACTGCCCAATGAGTTGCTGCACGAGATACTCTTGAATCTTC  67

Query  62   CCACGAGTGAGTCTGTTAGGACAAGTGTCTTACCGACAAGATGGAGAAATCTCTGGCAAA  121
            |||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||
Sbjct  68   CCACGAGTGAGTCTGTTAGGACAAGTGTCTTATCGACCAGATGGAGAAATCTCTGGCAAA  127

Query  122  GTGTTCCTGGTTTGTACCTAATTTC-TCGACAGATTCTTAA-ATTT-GTAAACTTG-CG-  176
            |||||||||| ||||   | |   | | || |  |||  || |||| |  |  ||  || 
Sbjct  128  GTGTTCCTGGATTGTTGTTGACC-CGTGGA-A--TTC--AACATTTTGCGA--TTAACGG  179

Query  177  TACACCGAGTGATGTGGTTCTAGAGATGCTTATCTCGTGCTCTCCTGTTCTTCAAGTCTT  236
            | |    | ||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct  180  TTCT---ATTGATGTGGTTCTAGAGATGCTTATCTCATGCTCTCCAGTTCTTCAAGTCTT  236

Query  237  GAGCATTTGTGATGTTGGAGTTGA-CTTTTTGAAAGTGCGATCTCAGACGTTAAGGAGCT  295
            |||||||| | || | ||||| || ||||| |||||||||||||||||||||||||||||
Sbjct  237  GAGCATTTATAATATCGGAGTGGAACTTTT-GAAAGTGCGATCTCAGACGTTAAGGAGCT  295

Query  296  TGAGT  300
            |||||
Sbjct  296  TGAGT  300


 Score =  200 bits (108),  Expect = 2e-50
 Identities = 125/133 (94%), Gaps = 2/133 (2%)
 Strand=Plus/Plus

Query  560  AGATGTTGCC--TATATATCTCTCCAGCAGTCCCAACCTAAAATCTATTGACTTGGAGCT  617
            ||||||||||  ||||| |||||||||| ||||||||||||||||||| |||||||||||
Sbjct  459  AGATGTTGCCTGTATATCTCTCTCCAGCTGTCCCAACCTAAAATCTATAGACTTGGAGCT  518

Query  618  TCATGGTTATCCAAAGATGGAGGAAATTGCAAGCTCACCAGTGCCAAAATGTCTCCAAAC  677
            ||||||||||||||||||||||||||||||||||||||| |||||| |||||||| ||||
Sbjct  519  TCATGGTTATCCAAAGATGGAGGAAATTGCAAGCTCACCTGTGCCACAATGTCTCAAAAC  578

Query  678  ATCCATTGAGAAT  690
            |||||||||||||
Sbjct  579  ATCCATTGAGAAT  591


 Score =  145 bits (78),  Expect = 7e-34
 Identities = 101/111 (91%), Gaps = 6/111 (5%)
 Strand=Plus/Plus

Query  729  AAGCCGAAAAGCTGAAACCGAGGTTGCTAACTACATCTTAGAGAATGCAACACTTCT---  785
            |||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||   
Sbjct  594  AAGCCGAAAAGCTGAAACAGAGTTTGCTAACTACATCTTAGAGAATGCAACACTTCTCAA  653

Query  786  GAAGCTCACTCTATGGTTAGATGATGAAGAAGAAGACGAGTCTAGCAGCGT  836
            |||||||||||||||||||||||| |||||| ||  ||||| |||||||||
Sbjct  654  GAAGCTCACTCTATGGTTAGATGAAGAAGAA-AA--CGAGTGTAGCAGCGT  701



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 35759296146


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5