BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G60720.1
Length=1267
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486544 jgi|Araly1|486544|fgenesh2_kg.5__2536__AT3G60720.1 1576 0.0
> Ahg486544 jgi|Araly1|486544|fgenesh2_kg.5__2536__AT3G60720.1
Length=1290
Score = 1576 bits (853), Expect = 0.0
Identities = 1033/1112 (93%), Gaps = 43/1112 (4%)
Strand=Plus/Plus
Query 1 TTCGTTACAAGTGAATGTTCTAGACCACGTTTGTTGATCTATTATGTAGTTTT-GTATTC 59
||||||||||||||||||||||||||| | ||||||||||||||| ||||||| || |||
Sbjct 1 TTCGTTACAAGTGAATGTTCTAGACCAGGCTTGTTGATCTATTATCTAGTTTTAGT-TTC 59
Query 60 A-TCCTAGCTACATTTATATATATCCACTTATTTCTTAACTACGGTATGCATTATACATG 118
| || | |||| || | |||||||||||||| ||||||| ||||| ||||||||
Sbjct 60 ATTCAT-CCTAC----AT-T-TATCCACTTATTTCATAACTACAGTATG---TATACATG 109
Query 119 TTTGTATTAATGTCGCC-G--ATAAAAGTTTCGGACCCATAGTGATGA--ATAATCATTC 173
|||||||||||||| || | ||| || ||||| ||||||||||||| |||||||||
Sbjct 110 TTTGTATTAATGTC-CCAGTTATACAA--TTCGGTCCCATAGTGATGAGCCTAATCATTC 166
Query 174 TCGATTATTATTGTT-AAATAAAACACTACAAGGAATAAGATAGATCA-AAAACGAAAGC 231
||||| | |||| || |||||||||||| | |||||||||| || | |||||||||||
Sbjct 167 TCGATAACTATT-TTAAAATAAAACACT---ATGAATAAGATACAT-AGAAAACGAAAGC 221
Query 232 TCCTTTGAAAACAATCTCAAAGAACAAGAAAATATGAGAAGActctttctct--tctctc 289
|| |||||||||||||||||||||||| |||||||||||||||||||||||| ||| ||
Sbjct 222 TCATTTGAAAACAATCTCAAAGAACAA-AAAATATGAGAAGACTCTTTCTCTCCTCTTTC 280
Query 290 -tcctctttt-tattcttttactcatcctcctcctcAAGATCTTCATCAGAATCTCACAT 347
|||| |||| | |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 281 TTCCT-TTTTCTCTTCTTTTACTCATCATCCTCCTCAAGATCTTCATCAGAATCTCACAT 339
Query 348 CTTCATCTACGGAGGATGTTCACCGGAAAAATACACACCAAACACACCTTTTGAGTCAAA 407
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 340 CTTCATCTACGGAGGATGTTCACCGGAAAAATACACACCAAACACACCTTTTGAATCAAA 399
Query 408 CCGCGACACTTTCCTCTCCTCTGTCGTCACTTCCTCCTCTGACGCGTCCTTCAACAGCTT 467
||| || |||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 400 CCGTGATACTTTCCTCTCCTCTGTCATCACTTCCTCCTCTGACGCGTCCTTCAACAGCTT 459
Query 468 TGCCGTCGGCAACGACTCCTCCTCCTCCTCATCCTCTTCCGCCGTCTTCGGCCTCTATCA 527
||||||||||||||| ||||| | | |||||||||||||||||||||||||||||
Sbjct 460 TGCCGTCGGCAACGA------CTCCT-C-C-TCCTCTTCCGCCGTCTTCGGCCTCTATCA 510
Query 528 ATGCCGTGACGATCTCCGATCATCAGACTGCTCAAAATGCATCCAAACCTCAGTCGATCA 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 511 ATGCCGTGACGATCTCCGATCATCAGACTGCTCAAAATGCATCCAAACCTCAGTCGATCA 570
Query 588 AATCACTCTCATTTGTCCTTACTCTTACGGCGCTTCTCTCCAGCTCGAAGGCTGCTTCTT 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 571 AATCACTCTCATTTGTCCTTACTCTTACGGCGCTTCTCTCCAGCTCGAAGGCTGCTTCTT 630
Query 648 ACGTTACGAAACAAACGATTTTCTAGGGAAACCAGACACAAGTCTTAGGTACAAGAAGTG 707
||||||||| || ||||| ||||| ||||||||||| || |||||||||||||| |||||
Sbjct 631 ACGTTACGAGACCAACGACTTTCTTGGGAAACCAGATACGAGTCTTAGGTACAAAAAGTG 690
Query 708 TAGTTCCAAGAGCGTTGAGAATGACTACGATTTCTTTAAGCGGAGAGACGATGTGTTGTC 767
|||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 691 TAGTTCAAAGAGCGTTGAGAATGACTACGATTTCTTTAAACGGAGAGACGATGTGTTGTC 750
Query 768 GGATCTTGAGTCGACTCAACTCGGTTACAAAGTTAGCCGGTCCGGTTTAGTCGAAGGTTA 827
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 751 GGATCTTGAGTCGACTCAACTCGGTTACAAAGTTAGCCGGTCCGGTTTAGTCGAGGGTTA 810
Query 828 TGCTCAGTGTGTTGGTGACTTGAGTCCTAGTGACTGTACGGCTTGTCTTGCCGAGTCTGT 887
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 811 TGCTCAGTGTGTTGGTGACTTGAGTCCTAGTGACTGTACGGCTTGTCTTGCGGAGTCTGT 870
Query 888 CGGAAAATTAAAGAATCTTTGTGGCTCGGCGGTTGCAGCTGAGGTTTACTTGGCTCAGTG 947
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 871 CGGGAAATTAAAGAATCTTTGTGGCTCGGCGGTTGCAGCTGAGGTTTACTTGGCTCAGTG 930
Query 948 CTATGCTCGTTATTGGGGCTCTGGTTACTATGACTTCTCTTCAGATCCAACGAATGGAGA 1007
|||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 931 CTATGCTCGTTATTGGGGTTCTGGTTACTATGACTTCTCTTCAGATCCAACGAACGGAGA 990
Query 1008 TCACGTGGGGAAATCAATCGCGATCATCGTAGGAGTCATTGCTGGATTCGCAATTCTTGT 1067
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 991 TCACGTGGGGAAATCAATCGCGATCATCGTAGGAGTCATTGCTGGATTCGCAATTCTTGT 1050
Query 1068 TGTTCTCCTCTCCCTTTGTAGAAACTCCATGC 1099
||||||||||||||||||||||||||||||||
Sbjct 1051 TGTTCTCCTCTCCCTTTGTAGAAACTCCATGC 1082
Score = 191 bits (103), Expect = 1e-47
Identities = 154/178 (87%), Gaps = 5/178 (3%)
Strand=Plus/Plus
Query 1095 CATGCATTGATATAATGAAAGGCATGATTCGGGATACAAGATTCTAGGGACCT-Gttttt 1153
||||||||||||||| ||||| |||||||||||||| |||||||||||||||| |||||
Sbjct 1113 CATGCATTGATATAAAGAAAGACATGATTCGGGATAAAAGATTCTAGGGACCTATTTTTT 1172
Query 1154 ttttttttGAACTCTCTTGTA-T-TC-CACTATTCCTTTTATTTTGTAGGAGGAACACAT 1210
|||||||| | | | | | || ||||||||||||||||||||||||||||||
Sbjct 1173 TTTTTTTTTTTTTTTGGGGGACTCTCTTGTTATTCCTTTTATTTTGTAGGAGGAACACAT 1232
Query 1211 CCGTTACCGTTCCTTGCTGAAATTTTTGGTTTATCAAAAG-GAAAACTATTAGTGACT 1267
||||||||||||||| ||||| ||||||||||||||||| |||||||||||||||||
Sbjct 1233 CCGTTACCGTTCCTTACTGAATTTTTTGGTTTATCAAAAAAGAAAACTATTAGTGACT 1290
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47348662914
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5