BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G60730.1
Length=1672
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486545 jgi|Araly1|486545|fgenesh2_kg.5__2537__AT3G60730.1 2495 0.0
> Ahg486545 jgi|Araly1|486545|fgenesh2_kg.5__2537__AT3G60730.1
Length=1661
Score = 2495 bits (1351), Expect = 0.0
Identities = 1561/1663 (94%), Gaps = 11/1663 (1%)
Strand=Plus/Plus
Query 1 ACTTAAAACGCATTTCAAGAAAATTACT-AAACACTACAACAATCTTATAATAACATTTA 59
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||
Sbjct 1 ACTTAAAACGCATTTCAAGAAAATTACTAAAACACTACAACAATCTTATAATAACATCTA 60
Query 60 CTAAAAATGTCCACGTTTGTAAAAGTCACCGACTTAATCACTATCATGTTCTTTCTAGCC 119
|||||||||| ||||||||||||||| |||||||||||||| ||||||||||| ||||||
Sbjct 61 CTAAAAATGTACACGTTTGTAAAAGTAACCGACTTAATCACCATCATGTTCTTGCTAGCC 120
Query 120 ATTGCTGCCGTCATAACCGCCTCAAACACAGCCGAGTTGGATGTACTTGAAATGGCTAGA 179
||||| |||||| |||||||||||||||||||||| |||||||||||||| |||||| ||
Sbjct 121 ATTGCAGCCGTCGTAACCGCCTCAAACACAGCCGAATTGGATGTACTTGAGATGGCTCGA 180
Query 180 ACTGCTGTGGTTGAAGCCAAGACTAGTTTTGGGTCAATGGCTGTGACTGAGGCAACTAGT 239
|| ||||||||||||||| | |||||||||||||| |||||||| ||||||||| |||
Sbjct 181 ACAGCTGTGGTTGAAGCCCGGGCTAGTTTTGGGTCAGTGGCTGTGGTTGAGGCAACGAGT 240
Query 240 GAAGTTG---CTGGTAGTTATTATAAATTGGGGTTAAGTGAATGCGAGAAGCTCTACGAT 296
||||||| || ||||||||||||| ||||| ||||||||||| || ||||||||||||
Sbjct 241 GAAGTTGCTACTAGTAGTTATTATAATTTGGGATTAAGTGAATGTGAAAAGCTCTACGAT 300
Query 297 GAGAGTGAAGCTAGGCTATCGAAACTGGTCGTAGATCATGAGAATTTCACCGTTGAAGAT 356
| |||||||||||||||||||||||| ||||| | |||||||||||| ||||||||||||
Sbjct 301 GTGAGTGAAGCTAGGCTATCGAAACTTGTCGTGGCTCATGAGAATTTTACCGTTGAAGAT 360
Query 357 GTTAGAACGTGGCTAAGTGGCGTGCTTGCGAATCATCACACTTGTTTAGACGGTTTAATT 416
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 361 GTTAGAACGTGGCTAAGTGGCGTGCTTGCGAACCATCACACTTGTTTAGACGGTTTGGTT 420
Query 417 CAGCAACGTCAAGGTCATAAGCCTTTGGTCCATAGCAACGTCACGTTCGTGCTCCATGAA 476
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 CAGCAACGTGAAGGTCATAAGCCTTTGGTCCATAGCAACGTCACGTTCGTGCTCCATGAA 480
Query 477 GCTTTGGCTTTCTACAAAAAGTCTAGAGGTCATATGAAAAAGAGGCTGCATGGACCAGCG 536
|||||||||||||| |||||||||||||||||||||||||||| ||| |||||||||||
Sbjct 481 GCTTTGGCTTTCTATAAAAAGTCTAGAGGTCATATGAAAAAGACGCTCCATGGACCAGCT 540
Query 537 AGACAGGGCCATGGACC--AACGAGACCAAAACATAGACCAACGAGACCAAATCATGGAC 594
||| || ||||||||| || |||||||||||| ||||||||||| ||||||||||||
Sbjct 541 AGAGAGAACCATGGACCTGAA--AGACCAAAACATGGACCAACGAGATCAAATCATGGAC 598
Query 595 CAGGAAGATCACACCATGGACCATCAAGACCAAACCAAAACGGTGGAATGTTAGTGTCAT 654
||||| || || |||||| |||||| ||||||||||||| ||||||||||||||||||||
Sbjct 599 CAGGACGACCAAACCATGAACCATCGAGACCAAACCAAAGCGGTGGAATGTTAGTGTCAT 658
Query 655 GGAATCCAACAAGTTCAAGGGCAGATTTCGTGGTGGCTCGGGACGGTTCGGCGACTCATC 714
||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 659 GGAATCCAACAAGTTCAAGGGCAGATTTCGTGGTGGCTCAGGACGGTTCGGGGACTCATC 718
Query 715 GGACGATAAACCAAGCATTAGCCGCCGTTTCAAGAATGGGTAAAAGTCGGTTGAATAGAG 774
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 719 GGACGATAAACCAAGCGTTAGCCGCCGTTTCAAGAATGGGTAAAAGTCGGTTGAATAGAG 778
Query 775 TGATAATATACATAAAAGCTGGTGTTTATAACGAAAAAATCGAAATAGATAGACACATGA 834
||||||| |||||||||||||||||||||||||||||| |||| ||||||||||||||||
Sbjct 779 TGATAATCTACATAAAAGCTGGTGTTTATAACGAAAAAGTCGATATAGATAGACACATGA 838
Query 835 AAAACATCATGCTAGTTGGTGATGGTATGGACCGTACAATTGTCACCAATAACCGAAACG 894
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 839 AAAACATCATGCTAGTTGGTGATGGTATGGACCGTACAATCGTCACCAATAACCGAAACG 898
Query 895 TCCCGGACGGTTCCACGACTTATGGATCAGCGACATTCGGAGTGTCCGGGGATGGATTTT 954
||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 899 TCCCGGATGGTTCCACGACTTATGGATCAGCGACATTTGGAGTGTCCGGGGATGGATTTT 958
Query 955 GGGCACGGGACATAACGTTCGAGAATACTGCAGGACCACATAAACATCAAGCTGTGGCGT 1014
|||| |||||||| || |||||||| |||||||||||||||||||| |||||||||||||
Sbjct 959 GGGCGCGGGACATGACATTCGAGAACACTGCAGGACCACATAAACACCAAGCTGTGGCGT 1018
Query 1015 TGAGAGTGAGCTCAGACTTGTCTTTATTCTATCGGTGTAGTTTCAAAGGATATCAAGATA 1074
||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1019 TGAGAGTGAGCTCGGACTTGTCTTTATTCTATCGTTGTAGTTTCAAAGGATATCAAGATA 1078
Query 1075 CTCTTTTCACGCACTCACTTCGTCAATTCTACCGCGATTGTCATATTTATGGTACGATTG 1134
|||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1079 CTCTTTTCACCCACTCACTTCGTCAATTCTACCGAGATTGTCATATTTATGGTACGATTG 1138
Query 1135 ATTTCATATTTGGAGATGCGGCAGCTGTTTTTCAGAACTGTGATATATTTGTGAGGCGGC 1194
|||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||
Sbjct 1139 ATTTCATATTTGGAGATGCGACAGCTGTTTTTCAGAACTGTGATATATTTGTGAGACGGC 1198
Query 1195 CTATGGATCATCAAGGCAACATGATCACAGCTCAAGGAAGAGACGACCCACATACAAATT 1254
||||||||||||||||||| ||||||||||||||||| ||||||||||||||| ||||||
Sbjct 1199 CTATGGATCATCAAGGCAATATGATCACAGCTCAAGGGAGAGACGACCCACATTCAAATT 1258
Query 1255 CAGGCATTTCGATCCAACACTCACGGATCAGGGCCGCACCAGAATTCGAAGCAGTTAAAG 1314
||||||||||||||||||| ||||||||||||||||||||||||||||| || |||||||
Sbjct 1259 CAGGCATTTCGATCCAACATTCACGGATCAGGGCCGCACCAGAATTCGAGGCGGTTAAAG 1318
Query 1315 GCCGGTTTAAGAGCTACTTGGGCCGGCCATGGAAGAAGTACTCACGGACAGTGTTTCTCA 1374
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1319 GCCGGTTTAAGAGCTACTTGGGCCGGCCATGGAAGAAGTACTCACGGACAGTGCTTCTCA 1378
Query 1375 AAACAGATATCGACGAGTTGATTGACCCGAGAGGGTGGAGAGAATGGAGTGGCAGTTATG 1434
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1379 AAACGGATATCGACGAGTTGATTGACCCGAGAGGGTGGAGAGAATGGAGTGGCAGTTATG 1438
Query 1435 CTTTGTCGACGTTGTATTACGGCGAGTTTATGAACACCGGAGCTGGAGCAGGGACTGGTA 1494
|| |||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1439 CTCTGTCAACGTTGTATTACGGCGAGTTTATGAACACCGGAGCTGGAGCAGGGACAAGCC 1498
Query 1495 GAAGGGTGAACTGGCCGGGATTTCACGTCCTACGCGGTGAGGAAGAGGCTTCTCCGTTTA 1554
||||||||||||||||||||||||||||||| ||||| |||| |||||||||||||| |
Sbjct 1499 GAAGGGTGAACTGGCCGGGATTTCACGTCCTTCGCGGCCAGGAGGAGGCTTCTCCGTTCA 1558
Query 1555 CCGTCAGCCGATTCATACAAGGAGATTCTTGGATCCCTATCACCGGTGTGCCGTTTTCAG 1614
| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1559 CGGTCAGCCGATTCATTCAAGGAGATTCTTGGATCCCTATCACCGGTGTGCCGTTTTCAG 1618
Query 1615 CTGGGGTTTGAGTCACTTTTGAAT---GAATAAATCATCAACA 1654
| |||||||||||||||||||| | |||| |||||||||||
Sbjct 1619 CCGGGGTTTGAGTCACTTTTGACTCTTGAATGAATCATCAACA 1661
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62696543270
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5