BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G60730.1 Length=1672 Score E Sequences producing significant alignments: (Bits) Value Ahg486545 jgi|Araly1|486545|fgenesh2_kg.5__2537__AT3G60730.1 2495 0.0 > Ahg486545 jgi|Araly1|486545|fgenesh2_kg.5__2537__AT3G60730.1 Length=1661 Score = 2495 bits (1351), Expect = 0.0 Identities = 1561/1663 (94%), Gaps = 11/1663 (1%) Strand=Plus/Plus Query 1 ACTTAAAACGCATTTCAAGAAAATTACT-AAACACTACAACAATCTTATAATAACATTTA 59 |||||||||||||||||||||||||||| |||||||||||||||||||||||||||| || Sbjct 1 ACTTAAAACGCATTTCAAGAAAATTACTAAAACACTACAACAATCTTATAATAACATCTA 60 Query 60 CTAAAAATGTCCACGTTTGTAAAAGTCACCGACTTAATCACTATCATGTTCTTTCTAGCC 119 |||||||||| ||||||||||||||| |||||||||||||| ||||||||||| |||||| Sbjct 61 CTAAAAATGTACACGTTTGTAAAAGTAACCGACTTAATCACCATCATGTTCTTGCTAGCC 120 Query 120 ATTGCTGCCGTCATAACCGCCTCAAACACAGCCGAGTTGGATGTACTTGAAATGGCTAGA 179 ||||| |||||| |||||||||||||||||||||| |||||||||||||| |||||| || Sbjct 121 ATTGCAGCCGTCGTAACCGCCTCAAACACAGCCGAATTGGATGTACTTGAGATGGCTCGA 180 Query 180 ACTGCTGTGGTTGAAGCCAAGACTAGTTTTGGGTCAATGGCTGTGACTGAGGCAACTAGT 239 || ||||||||||||||| | |||||||||||||| |||||||| ||||||||| ||| Sbjct 181 ACAGCTGTGGTTGAAGCCCGGGCTAGTTTTGGGTCAGTGGCTGTGGTTGAGGCAACGAGT 240 Query 240 GAAGTTG---CTGGTAGTTATTATAAATTGGGGTTAAGTGAATGCGAGAAGCTCTACGAT 296 ||||||| || ||||||||||||| ||||| ||||||||||| || |||||||||||| Sbjct 241 GAAGTTGCTACTAGTAGTTATTATAATTTGGGATTAAGTGAATGTGAAAAGCTCTACGAT 300 Query 297 GAGAGTGAAGCTAGGCTATCGAAACTGGTCGTAGATCATGAGAATTTCACCGTTGAAGAT 356 | |||||||||||||||||||||||| ||||| | |||||||||||| |||||||||||| Sbjct 301 GTGAGTGAAGCTAGGCTATCGAAACTTGTCGTGGCTCATGAGAATTTTACCGTTGAAGAT 360 Query 357 GTTAGAACGTGGCTAAGTGGCGTGCTTGCGAATCATCACACTTGTTTAGACGGTTTAATT 416 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || Sbjct 361 GTTAGAACGTGGCTAAGTGGCGTGCTTGCGAACCATCACACTTGTTTAGACGGTTTGGTT 420 Query 417 CAGCAACGTCAAGGTCATAAGCCTTTGGTCCATAGCAACGTCACGTTCGTGCTCCATGAA 476 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 421 CAGCAACGTGAAGGTCATAAGCCTTTGGTCCATAGCAACGTCACGTTCGTGCTCCATGAA 480 Query 477 GCTTTGGCTTTCTACAAAAAGTCTAGAGGTCATATGAAAAAGAGGCTGCATGGACCAGCG 536 |||||||||||||| |||||||||||||||||||||||||||| ||| ||||||||||| Sbjct 481 GCTTTGGCTTTCTATAAAAAGTCTAGAGGTCATATGAAAAAGACGCTCCATGGACCAGCT 540 Query 537 AGACAGGGCCATGGACC--AACGAGACCAAAACATAGACCAACGAGACCAAATCATGGAC 594 ||| || ||||||||| || |||||||||||| ||||||||||| |||||||||||| Sbjct 541 AGAGAGAACCATGGACCTGAA--AGACCAAAACATGGACCAACGAGATCAAATCATGGAC 598 Query 595 CAGGAAGATCACACCATGGACCATCAAGACCAAACCAAAACGGTGGAATGTTAGTGTCAT 654 ||||| || || |||||| |||||| ||||||||||||| |||||||||||||||||||| Sbjct 599 CAGGACGACCAAACCATGAACCATCGAGACCAAACCAAAGCGGTGGAATGTTAGTGTCAT 658 Query 655 GGAATCCAACAAGTTCAAGGGCAGATTTCGTGGTGGCTCGGGACGGTTCGGCGACTCATC 714 ||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| Sbjct 659 GGAATCCAACAAGTTCAAGGGCAGATTTCGTGGTGGCTCAGGACGGTTCGGGGACTCATC 718 Query 715 GGACGATAAACCAAGCATTAGCCGCCGTTTCAAGAATGGGTAAAAGTCGGTTGAATAGAG 774 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 719 GGACGATAAACCAAGCGTTAGCCGCCGTTTCAAGAATGGGTAAAAGTCGGTTGAATAGAG 778 Query 775 TGATAATATACATAAAAGCTGGTGTTTATAACGAAAAAATCGAAATAGATAGACACATGA 834 ||||||| |||||||||||||||||||||||||||||| |||| |||||||||||||||| Sbjct 779 TGATAATCTACATAAAAGCTGGTGTTTATAACGAAAAAGTCGATATAGATAGACACATGA 838 Query 835 AAAACATCATGCTAGTTGGTGATGGTATGGACCGTACAATTGTCACCAATAACCGAAACG 894 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 839 AAAACATCATGCTAGTTGGTGATGGTATGGACCGTACAATCGTCACCAATAACCGAAACG 898 Query 895 TCCCGGACGGTTCCACGACTTATGGATCAGCGACATTCGGAGTGTCCGGGGATGGATTTT 954 ||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 899 TCCCGGATGGTTCCACGACTTATGGATCAGCGACATTTGGAGTGTCCGGGGATGGATTTT 958 Query 955 GGGCACGGGACATAACGTTCGAGAATACTGCAGGACCACATAAACATCAAGCTGTGGCGT 1014 |||| |||||||| || |||||||| |||||||||||||||||||| ||||||||||||| Sbjct 959 GGGCGCGGGACATGACATTCGAGAACACTGCAGGACCACATAAACACCAAGCTGTGGCGT 1018 Query 1015 TGAGAGTGAGCTCAGACTTGTCTTTATTCTATCGGTGTAGTTTCAAAGGATATCAAGATA 1074 ||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 1019 TGAGAGTGAGCTCGGACTTGTCTTTATTCTATCGTTGTAGTTTCAAAGGATATCAAGATA 1078 Query 1075 CTCTTTTCACGCACTCACTTCGTCAATTCTACCGCGATTGTCATATTTATGGTACGATTG 1134 |||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 1079 CTCTTTTCACCCACTCACTTCGTCAATTCTACCGAGATTGTCATATTTATGGTACGATTG 1138 Query 1135 ATTTCATATTTGGAGATGCGGCAGCTGTTTTTCAGAACTGTGATATATTTGTGAGGCGGC 1194 |||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||| Sbjct 1139 ATTTCATATTTGGAGATGCGACAGCTGTTTTTCAGAACTGTGATATATTTGTGAGACGGC 1198 Query 1195 CTATGGATCATCAAGGCAACATGATCACAGCTCAAGGAAGAGACGACCCACATACAAATT 1254 ||||||||||||||||||| ||||||||||||||||| ||||||||||||||| |||||| Sbjct 1199 CTATGGATCATCAAGGCAATATGATCACAGCTCAAGGGAGAGACGACCCACATTCAAATT 1258 Query 1255 CAGGCATTTCGATCCAACACTCACGGATCAGGGCCGCACCAGAATTCGAAGCAGTTAAAG 1314 ||||||||||||||||||| ||||||||||||||||||||||||||||| || ||||||| Sbjct 1259 CAGGCATTTCGATCCAACATTCACGGATCAGGGCCGCACCAGAATTCGAGGCGGTTAAAG 1318 Query 1315 GCCGGTTTAAGAGCTACTTGGGCCGGCCATGGAAGAAGTACTCACGGACAGTGTTTCTCA 1374 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 1319 GCCGGTTTAAGAGCTACTTGGGCCGGCCATGGAAGAAGTACTCACGGACAGTGCTTCTCA 1378 Query 1375 AAACAGATATCGACGAGTTGATTGACCCGAGAGGGTGGAGAGAATGGAGTGGCAGTTATG 1434 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1379 AAACGGATATCGACGAGTTGATTGACCCGAGAGGGTGGAGAGAATGGAGTGGCAGTTATG 1438 Query 1435 CTTTGTCGACGTTGTATTACGGCGAGTTTATGAACACCGGAGCTGGAGCAGGGACTGGTA 1494 || |||| ||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 1439 CTCTGTCAACGTTGTATTACGGCGAGTTTATGAACACCGGAGCTGGAGCAGGGACAAGCC 1498 Query 1495 GAAGGGTGAACTGGCCGGGATTTCACGTCCTACGCGGTGAGGAAGAGGCTTCTCCGTTTA 1554 ||||||||||||||||||||||||||||||| ||||| |||| |||||||||||||| | Sbjct 1499 GAAGGGTGAACTGGCCGGGATTTCACGTCCTTCGCGGCCAGGAGGAGGCTTCTCCGTTCA 1558 Query 1555 CCGTCAGCCGATTCATACAAGGAGATTCTTGGATCCCTATCACCGGTGTGCCGTTTTCAG 1614 | |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 1559 CGGTCAGCCGATTCATTCAAGGAGATTCTTGGATCCCTATCACCGGTGTGCCGTTTTCAG 1618 Query 1615 CTGGGGTTTGAGTCACTTTTGAAT---GAATAAATCATCAACA 1654 | |||||||||||||||||||| | |||| ||||||||||| Sbjct 1619 CCGGGGTTTGAGTCACTTTTGACTCTTGAATGAATCATCAACA 1661 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 62696543270 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5