BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G60770.1

Length=915
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg939120 jgi|Araly1|939120|scaffold_503311.1                       1190    0.0  


> Ahg939120 jgi|Araly1|939120|scaffold_503311.1
Length=700

 Score = 1190 bits (644),  Expect = 0.0
 Identities = 680/697 (98%), Gaps = 3/697 (0%)
 Strand=Plus/Plus

Query  46   AAGCGCAG-CAGCAGCCGTAAGAAAGAAACCGAGGAAGAACGATCTCAGTGAGAGGACGA  104
            |||||||| | ||||||| ||||||  |||||||||||||||||||||||||||||| ||
Sbjct  2    AAGCGCAGTC-GCAGCCGGAAGAAACCAACCGAGGAAGAACGATCTCAGTGAGAGGAAGA  60

Query  105  TCACTTCGCCGTCGCAGTCATGGGTCGAATGCATAGTAGAGGTAAGGGTATCTCGGCATC  164
            ||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct  61   TCACTTCGCCGTCGCAGCCATGGGTCGAATGCATAGTAAAGGTAAGGGTATCTCGGCATC  120

Query  165  TGCTTTGCCGTACAAGCGTTCATCTCCGAGCTGGCTCAAGACAACCCCTCAAGATGTTGA  224
            ||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct  121  TGCTTTGCCGTACAAGCGTTCATCTCCGAGCTGGCTCAAGACAACTCCTCAGGATGTTGA  180

Query  225  TGAGTCCATCTGCAAATTTGCGAAGAAGGGTTTGACCCCATCGCAGATTGGTGTCATTCT  284
            ||||||||| ||||| ||||| |||||||||||||||||||||||||||||||| |||||
Sbjct  181  TGAGTCCATTTGCAAGTTTGCAAAGAAGGGTTTGACCCCATCGCAGATTGGTGTTATTCT  240

Query  285  TCGTGACTCTCACGGAATTCCACAGGTGAAAAGTGTTACTGGAAGCAAGATTCTCAGAAT  344
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  241  TCGTGACTCTCACGGAATTCCACAGGTGAAAAGTGTTACTGGAAGCAAGATTCTCAGAAT  300

Query  345  TTTGAAAGCTCATGGTCTTGCACCTGAGATCCCTGAGGATCTGTATCACTTGATCAAGAA  404
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  301  TTTGAAAGCTCATGGTCTTGCACCTGAGATCCCTGAGGATCTGTATCACTTGATCAAGAA  360

Query  405  AGCTGTTGCTATCCGCAAGCATCTTGAGAGGAACAGGAAAGATAAGGATTCCAAATTCAG  464
            ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct  361  AGCTGTTGCTATCCGCAAGCACCTTGAGAGGAACAGGAAAGATAAGGATTCCAAATTCAG  420

Query  465  GCTGATTCTTGTAGAGAGCAGAATCCATCGTCTTGCTCGTTACTACAAGAAGACCAAGAA  524
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  421  GCTGATTCTTGTAGAGAGCAGAATCCATCGTCTTGCTCGTTACTACAAGAAGACCAAGAA  480

Query  525  GCTCCCACCCGTCTGGAAGTACGAGTCTACAACTGCAAGCACTCTTGTGGCTTGAGAAGA  584
            ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct  481  GCTCCCACCCGTCTGGAAGTATGAGTCTACAACTGCAAGCACTCTTGTGGCTTGAGAAGA  540

Query  585  ATAGAGTTGATCATGTCCTTCAAGAAGGACCATTTCATTGTCTGCATTGCAACTCAAAGC  644
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  541  ATAGAGTTGATCATGTCCTTCAAGAAGGACCATTTCATTGTCTGCATTGCAACTCAAAGC  600

Query  645  TCTTCTTCTTTTGAACCTATGTATCTGTTTTCGCTAGTTTTGATGGGTTACAACTTGCTA  704
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  601  TCTTCTTCTTTTGAACCTATGTATCTGTTTTCGCTAGTTTTGATGGGTTACAACTTGCTA  660

Query  705  TGAGATTTT-GATTTTAGGGAACGAATTTGTTTATGC  740
            ||||||||| |||||||||||||||||||||||||||
Sbjct  661  TGAGATTTTTGATTTTAGGGAACGAATTTGTTTATGC  697



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 33929396130


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5