BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G60780.1 Length=850 Score E Sequences producing significant alignments: (Bits) Value Ahg486550 jgi|Araly1|486550|fgenesh2_kg.5__2542__AT3G60780.1 1230 0.0 Ahg483673 jgi|Araly1|483673|fgenesh2_kg.4__2733__AT2G45360.1 438 3e-122 > Ahg486550 jgi|Araly1|486550|fgenesh2_kg.5__2542__AT3G60780.1 Length=848 Score = 1230 bits (666), Expect = 0.0 Identities = 795/856 (93%), Gaps = 14/856 (2%) Strand=Plus/Plus Query 1 AAACATTTTTATCAAGATATTAACACAAGAATACGATCATGAGGCTCGTCTGGTCGCCGG 60 |||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| Sbjct 1 AAACATTTTTATCAAGATATTAACACAAGAATACGATCATGAAGCTCGTCTGGTCACCGG 60 Query 61 AAACTGCCTCTAACGCTTACATCCACACCGTTAGATCATGTAAAAGCTACAGAGACTCGA 120 |||| || || |||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 61 AAACAGCATCCAACGCTTACATCCACACCGTTAGATCATGTAAAAGCTACAGAGAATCGA 120 Query 121 GCGTGGCGGAGTTTTTATCGGCTACGGCGGCGGGATGGAACACGAGGCTGATCGTTGAGA 180 | || |||||||| ||||||||||||||||||||||||||||| | ||||||||| |||| Sbjct 121 GTGTAGCGGAGTTCTTATCGGCTACGGCGGCGGGATGGAACACTAAGCTGATCGTCGAGA 180 Query 181 CTTGGTCACGTGGAGATCCGATCGCAACTAGCGTCGGACTCGCCGTGGCAGCGATACACA 240 |||||||||||||||||||||| || || ||||||||||||||||| || |||||||||| Sbjct 181 CTTGGTCACGTGGAGATCCGATTGCCACCAGCGTCGGACTCGCCGTCGCGGCGATACACA 240 Query 241 CATGTGGAAGACACGTGTGCATAGTTCCTGACGAAGAGTCGAGGTCGGAGTACGAGGCGG 300 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 241 CATGTGGAAGACACGTGTGCATAGTTCCTGACGAAGAGTCAAGGTCGGAGTACGAGGCGG 300 Query 301 TGATGAGAGGAGCCGTT-ACGAGTGACTCAACGGAGGTTATGGTCTTAGACTCGGCGGAG 359 |||||| ||||||| || || ||||| |||||||| |||||||| ||||| ||||||||| Sbjct 301 TGATGAAAGGAGCCATTAAC-AGTGAATCAACGGAAGTTATGGTTTTAGATTCGGCGGAG 359 Query 360 GACGTGGTGGAGAGAATCTCCGGCGTGGATTTCATGGTGGTTGATTCGAAACGCCACGAG 419 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 360 GACGTGGTGGAGAGAATCTCCGGCGTGGATTTCATGGTGGTTGATTCGAAACGCCGCGAG 419 Query 420 TTCGTAAACGCGTTGGGATTAGCGAAAACGAGCAAAATGGGCGCCGTTTTGGTGTGTAAA 479 |||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 420 TTCGTAAAGGCGTTGGGATTAGCGAAAACGAGTAAAATGGGCGCCGTTTTGGTGTGTAAA 479 Query 480 AACGCCACGCTGAAATCTATCCCTGGGTTTAAATGGCAAGGTCTTTTGAGACGAGGTACA 539 |||||||||| ||||||||||||||||||||||||||| ||| ||||||||||||| ||| Sbjct 480 AACGCCACGCAGAAATCTATCCCTGGGTTTAAATGGCACGGTGTTTTGAGACGAGGCACA 539 Query 540 CGTGTCGTGAGATCGGTGTTCTTACCCGTCGGGAGAGGATTAGAGATCGTACACGTGGGA 599 ||||||||||| |||||||||||||||||||||||||||||||| |||| |||||||||| Sbjct 540 CGTGTCGTGAGGTCGGTGTTCTTACCCGTCGGGAGAGGATTAGAAATCGCACACGTGGGA 599 Query 600 GCCAGTGGTGGTGGTAATGGTTTGAGGAAGATTCCTAGCCGTTGGATTAAACACATAGAT 659 ||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| ||| Sbjct 600 GCCAGTGGTGGTGGTAATGATTTGAAGAAGATTCCTAGCCGTTGGATTAAACACATTGAT 659 Query 660 CCTCGATCTGGAGAGGAACACTTGTTTAAGCGTTAGTCAACGTTTTTGTTTTC---CCTT 716 |||| |||||||||||||||||||||||||||||||||||||||||| |||| |||| Sbjct 660 CCTCTATCTGGAGAGGAACACTTGTTTAAGCGTTAGTCAACGTTTTTTTTTTTTTTCCTT 719 Query 717 TTAATCAAAAACAATGTCATGTATTTTTTCCATAACAATTACCATTTCTAATCATGTAAT 776 | ||| ||||||| || ||||||||||| |||||||| |||||||||||||||||||||| Sbjct 720 T-AATAAAAAACA-TGCCATGTATTTTT-CCATAACAGTTACCATTTCTAATCATGTAAT 776 Query 777 AGATAGAAAAGAATATCACCACA-TCAAGAAGTAATTGG-TGATTTGTTTCCAAATGTAT 834 | ||||||| |||| || ||| | ||||||| | |||| |||||||||||||||||||| Sbjct 777 ATATAGAAAGGAATCTCGCCA-AGTCAAGAA-T--TTGGATGATTTGTTTCCAAATGTAT 832 Query 835 AGCTTCCTTTTGCTTC 850 |||||||||||||||| Sbjct 833 AGCTTCCTTTTGCTTC 848 > Ahg483673 jgi|Araly1|483673|fgenesh2_kg.4__2733__AT2G45360.1 Length=788 Score = 438 bits (237), Expect = 3e-122 Identities = 530/668 (79%), Gaps = 33/668 (5%) Strand=Plus/Plus Query 39 ATGAGGCTCGTCTGGTCGCCGGAAACTGCCTCTAACGCTTACATCCACACCGTTAGATCA 98 |||| ||| |||||||||||||||||||| ||| |||| |||||| ||||||||| ||| Sbjct 28 ATGAAGCTTGTCTGGTCGCCGGAAACTGCTTCTGACGCCTACATCGACACCGTTAAATCG 87 Query 99 TGTAAAAGCTACAGAGACTCGA-GCGTGGCGGAGTTTTTATCGGCTACGGCGGCGGGATG 157 ||||| ||||||| ||| || | | ||||||||||||||||| ||||||||||| ||||| Sbjct 88 TGTAAGAGCTACAAAGAATC-AGGAGTGGCGGAGTTTTTATCAGCTACGGCGGCTGGATG 146 Query 158 GAACACGAGGCTGATCGTTGAGACTTGGTCACGTGGAGATCCGATCGCAACTAGCGTCGG 217 |||| ||||||||||||||||||| |||||||| || ||||| ||||| ||||||||||| Sbjct 147 GAACGCGAGGCTGATCGTTGAGACATGGTCACGCGGCGATCCAATCGCGACTAGCGTCGG 206 Query 218 ACTCGCCGTGGCAGCGA-TACACACATGTGGAAGACACGTGTGCATAGTTCCTGACGAAG 276 |||||| || || || | | ||||| || |||||||||||||| ||||| ||||||| || Sbjct 207 ACTCGCGGTTGCTGCAACT-CACACGTGCGGAAGACACGTGTGTATAGTACCTGACG-AG 264 Query 277 -AGTC-GAGGTCGGAGTACGAGGCGGTGATGAGAGGAGCCGTTACGA-GTGACTCAACGG 333 | || | | ||||||| | || |||||||||| |||||||| | || | |||| Sbjct 265 CAATCTAAACT-TGAGTACGTGTTGGCCATGAGAGGAGTCGTTACGACG-GAGACGACGG 322 Query 334 AGG-T-T-ATGGTCTTAGACTCGGCGGAGGACGTGGTGGA-GAGAATCTCCGGCGTGGAT 389 ||| | | ||||| ||| || | ||| || | |||| ||| || |||| |||||| Sbjct 323 AGGTTGTGGTGGTCGGAGAATCTGTTGAGAACACGATGGAGGAGTTTC-CCGGTGTGGAT 381 Query 390 TTCATGGTGGTTGATTCGAAAC-GCCACGAGTTCG-TA-AACGCGTTGGGATTAGCGAAA 446 ||| ||||||| || ||||||| || | || |||| || ||||| | || || ||| || Sbjct 382 TTCTTGGTGGTGGACTCGAAACGGCGA-GATTTCGTTAGAACGC-TAAGG-TTTGCG-AA 437 Query 447 AC-GAGCAA-AATGGGCGCCGTTTTGGTGTGTAAAAACGCCACGC-TGAAATCTATCCCT 503 || |||||| || ||| |||||||||||||||||||||||||||| | | | | ||| || Sbjct 438 ACTGAGCAACAA-GGGTGCCGTTTTGGTGTGTAAAAACGCCACGCAT-AGAGCAATCTCT 495 Query 504 GGGTTTAAATGGCAAGGTCTTTTGAGACGAGGTACACGTGTCGTGAGATCGGTGTTCTTA 563 |||||||||||||| | | | |||| | |||| |||||||| || ||||| ||||| ||| Sbjct 496 GGGTTTAAATGGCACGATGTGTTGAAAGGAGGGACACGTGTAGTTAGATCCGTGTTTTTA 555 Query 564 CCCGTCGGGAGAGGATTAGAGATCGTACACGTGGGAGCCAGTGGTGGTGGT-AATG-GTT 621 || || ||||| || || || ||||||||||||||||| | |||||| || | | | Sbjct 556 CCGGTTGGGAGTGGGTTGGATATCGTACACGTGGGAGCTACTGGTGGCCACCAACGTGAT 615 Query 622 ---T-GAGGAAGATTCCTAGCCGTTGGATTAAACACATAGATCCTCGATCTGGAGAGGAA 677 | ||||| | ||| |||||||||||||| |||| | |||| || ||| |||||||| Sbjct 616 GACTCGAGGATGCTTCGTAGCCGTTGGATTAGACACGTGGATCATCTATCGGGAGAGGAG 675 Query 678 CACTTGTT 685 || ||||| Sbjct 676 CATTTGTT 683 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 31451406525 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5