BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G60780.1
Length=850
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486550 jgi|Araly1|486550|fgenesh2_kg.5__2542__AT3G60780.1 1230 0.0
Ahg483673 jgi|Araly1|483673|fgenesh2_kg.4__2733__AT2G45360.1 438 3e-122
> Ahg486550 jgi|Araly1|486550|fgenesh2_kg.5__2542__AT3G60780.1
Length=848
Score = 1230 bits (666), Expect = 0.0
Identities = 795/856 (93%), Gaps = 14/856 (2%)
Strand=Plus/Plus
Query 1 AAACATTTTTATCAAGATATTAACACAAGAATACGATCATGAGGCTCGTCTGGTCGCCGG 60
|||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||
Sbjct 1 AAACATTTTTATCAAGATATTAACACAAGAATACGATCATGAAGCTCGTCTGGTCACCGG 60
Query 61 AAACTGCCTCTAACGCTTACATCCACACCGTTAGATCATGTAAAAGCTACAGAGACTCGA 120
|||| || || |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 61 AAACAGCATCCAACGCTTACATCCACACCGTTAGATCATGTAAAAGCTACAGAGAATCGA 120
Query 121 GCGTGGCGGAGTTTTTATCGGCTACGGCGGCGGGATGGAACACGAGGCTGATCGTTGAGA 180
| || |||||||| ||||||||||||||||||||||||||||| | ||||||||| ||||
Sbjct 121 GTGTAGCGGAGTTCTTATCGGCTACGGCGGCGGGATGGAACACTAAGCTGATCGTCGAGA 180
Query 181 CTTGGTCACGTGGAGATCCGATCGCAACTAGCGTCGGACTCGCCGTGGCAGCGATACACA 240
|||||||||||||||||||||| || || ||||||||||||||||| || ||||||||||
Sbjct 181 CTTGGTCACGTGGAGATCCGATTGCCACCAGCGTCGGACTCGCCGTCGCGGCGATACACA 240
Query 241 CATGTGGAAGACACGTGTGCATAGTTCCTGACGAAGAGTCGAGGTCGGAGTACGAGGCGG 300
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 241 CATGTGGAAGACACGTGTGCATAGTTCCTGACGAAGAGTCAAGGTCGGAGTACGAGGCGG 300
Query 301 TGATGAGAGGAGCCGTT-ACGAGTGACTCAACGGAGGTTATGGTCTTAGACTCGGCGGAG 359
|||||| ||||||| || || ||||| |||||||| |||||||| ||||| |||||||||
Sbjct 301 TGATGAAAGGAGCCATTAAC-AGTGAATCAACGGAAGTTATGGTTTTAGATTCGGCGGAG 359
Query 360 GACGTGGTGGAGAGAATCTCCGGCGTGGATTTCATGGTGGTTGATTCGAAACGCCACGAG 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 360 GACGTGGTGGAGAGAATCTCCGGCGTGGATTTCATGGTGGTTGATTCGAAACGCCGCGAG 419
Query 420 TTCGTAAACGCGTTGGGATTAGCGAAAACGAGCAAAATGGGCGCCGTTTTGGTGTGTAAA 479
|||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 420 TTCGTAAAGGCGTTGGGATTAGCGAAAACGAGTAAAATGGGCGCCGTTTTGGTGTGTAAA 479
Query 480 AACGCCACGCTGAAATCTATCCCTGGGTTTAAATGGCAAGGTCTTTTGAGACGAGGTACA 539
|||||||||| ||||||||||||||||||||||||||| ||| ||||||||||||| |||
Sbjct 480 AACGCCACGCAGAAATCTATCCCTGGGTTTAAATGGCACGGTGTTTTGAGACGAGGCACA 539
Query 540 CGTGTCGTGAGATCGGTGTTCTTACCCGTCGGGAGAGGATTAGAGATCGTACACGTGGGA 599
||||||||||| |||||||||||||||||||||||||||||||| |||| ||||||||||
Sbjct 540 CGTGTCGTGAGGTCGGTGTTCTTACCCGTCGGGAGAGGATTAGAAATCGCACACGTGGGA 599
Query 600 GCCAGTGGTGGTGGTAATGGTTTGAGGAAGATTCCTAGCCGTTGGATTAAACACATAGAT 659
||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| |||
Sbjct 600 GCCAGTGGTGGTGGTAATGATTTGAAGAAGATTCCTAGCCGTTGGATTAAACACATTGAT 659
Query 660 CCTCGATCTGGAGAGGAACACTTGTTTAAGCGTTAGTCAACGTTTTTGTTTTC---CCTT 716
|||| |||||||||||||||||||||||||||||||||||||||||| |||| ||||
Sbjct 660 CCTCTATCTGGAGAGGAACACTTGTTTAAGCGTTAGTCAACGTTTTTTTTTTTTTTCCTT 719
Query 717 TTAATCAAAAACAATGTCATGTATTTTTTCCATAACAATTACCATTTCTAATCATGTAAT 776
| ||| ||||||| || ||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 720 T-AATAAAAAACA-TGCCATGTATTTTT-CCATAACAGTTACCATTTCTAATCATGTAAT 776
Query 777 AGATAGAAAAGAATATCACCACA-TCAAGAAGTAATTGG-TGATTTGTTTCCAAATGTAT 834
| ||||||| |||| || ||| | ||||||| | |||| ||||||||||||||||||||
Sbjct 777 ATATAGAAAGGAATCTCGCCA-AGTCAAGAA-T--TTGGATGATTTGTTTCCAAATGTAT 832
Query 835 AGCTTCCTTTTGCTTC 850
||||||||||||||||
Sbjct 833 AGCTTCCTTTTGCTTC 848
> Ahg483673 jgi|Araly1|483673|fgenesh2_kg.4__2733__AT2G45360.1
Length=788
Score = 438 bits (237), Expect = 3e-122
Identities = 530/668 (79%), Gaps = 33/668 (5%)
Strand=Plus/Plus
Query 39 ATGAGGCTCGTCTGGTCGCCGGAAACTGCCTCTAACGCTTACATCCACACCGTTAGATCA 98
|||| ||| |||||||||||||||||||| ||| |||| |||||| ||||||||| |||
Sbjct 28 ATGAAGCTTGTCTGGTCGCCGGAAACTGCTTCTGACGCCTACATCGACACCGTTAAATCG 87
Query 99 TGTAAAAGCTACAGAGACTCGA-GCGTGGCGGAGTTTTTATCGGCTACGGCGGCGGGATG 157
||||| ||||||| ||| || | | ||||||||||||||||| ||||||||||| |||||
Sbjct 88 TGTAAGAGCTACAAAGAATC-AGGAGTGGCGGAGTTTTTATCAGCTACGGCGGCTGGATG 146
Query 158 GAACACGAGGCTGATCGTTGAGACTTGGTCACGTGGAGATCCGATCGCAACTAGCGTCGG 217
|||| ||||||||||||||||||| |||||||| || ||||| ||||| |||||||||||
Sbjct 147 GAACGCGAGGCTGATCGTTGAGACATGGTCACGCGGCGATCCAATCGCGACTAGCGTCGG 206
Query 218 ACTCGCCGTGGCAGCGA-TACACACATGTGGAAGACACGTGTGCATAGTTCCTGACGAAG 276
|||||| || || || | | ||||| || |||||||||||||| ||||| ||||||| ||
Sbjct 207 ACTCGCGGTTGCTGCAACT-CACACGTGCGGAAGACACGTGTGTATAGTACCTGACG-AG 264
Query 277 -AGTC-GAGGTCGGAGTACGAGGCGGTGATGAGAGGAGCCGTTACGA-GTGACTCAACGG 333
| || | | ||||||| | || |||||||||| |||||||| | || | ||||
Sbjct 265 CAATCTAAACT-TGAGTACGTGTTGGCCATGAGAGGAGTCGTTACGACG-GAGACGACGG 322
Query 334 AGG-T-T-ATGGTCTTAGACTCGGCGGAGGACGTGGTGGA-GAGAATCTCCGGCGTGGAT 389
||| | | ||||| ||| || | ||| || | |||| ||| || |||| ||||||
Sbjct 323 AGGTTGTGGTGGTCGGAGAATCTGTTGAGAACACGATGGAGGAGTTTC-CCGGTGTGGAT 381
Query 390 TTCATGGTGGTTGATTCGAAAC-GCCACGAGTTCG-TA-AACGCGTTGGGATTAGCGAAA 446
||| ||||||| || ||||||| || | || |||| || ||||| | || || ||| ||
Sbjct 382 TTCTTGGTGGTGGACTCGAAACGGCGA-GATTTCGTTAGAACGC-TAAGG-TTTGCG-AA 437
Query 447 AC-GAGCAA-AATGGGCGCCGTTTTGGTGTGTAAAAACGCCACGC-TGAAATCTATCCCT 503
|| |||||| || ||| |||||||||||||||||||||||||||| | | | | ||| ||
Sbjct 438 ACTGAGCAACAA-GGGTGCCGTTTTGGTGTGTAAAAACGCCACGCAT-AGAGCAATCTCT 495
Query 504 GGGTTTAAATGGCAAGGTCTTTTGAGACGAGGTACACGTGTCGTGAGATCGGTGTTCTTA 563
|||||||||||||| | | | |||| | |||| |||||||| || ||||| ||||| |||
Sbjct 496 GGGTTTAAATGGCACGATGTGTTGAAAGGAGGGACACGTGTAGTTAGATCCGTGTTTTTA 555
Query 564 CCCGTCGGGAGAGGATTAGAGATCGTACACGTGGGAGCCAGTGGTGGTGGT-AATG-GTT 621
|| || ||||| || || || ||||||||||||||||| | |||||| || | | |
Sbjct 556 CCGGTTGGGAGTGGGTTGGATATCGTACACGTGGGAGCTACTGGTGGCCACCAACGTGAT 615
Query 622 ---T-GAGGAAGATTCCTAGCCGTTGGATTAAACACATAGATCCTCGATCTGGAGAGGAA 677
| ||||| | ||| |||||||||||||| |||| | |||| || ||| ||||||||
Sbjct 616 GACTCGAGGATGCTTCGTAGCCGTTGGATTAGACACGTGGATCATCTATCGGGAGAGGAG 675
Query 678 CACTTGTT 685
|| |||||
Sbjct 676 CATTTGTT 683
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31451406525
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5