BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G60790.1
Length=1467
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486551 jgi|Araly1|486551|fgenesh2_kg.5__2543__AT3G60790.1 1753 0.0
> Ahg486551 jgi|Araly1|486551|fgenesh2_kg.5__2543__AT3G60790.1
Length=1485
Score = 1753 bits (949), Expect = 0.0
Identities = 1308/1479 (88%), Gaps = 34/1479 (2%)
Strand=Plus/Plus
Query 12 atcatcatcatcatcatcatcatTGCCCTCGTCACTATCATCAACACCACCACTATTAGC 71
||||||||||||||||||| |||| | ||||| | ||||||||||||||||| |||| |
Sbjct 18 ATCATCATCATCATCATCACCATTATCGTCGTCCCCATCATCAACACCACCACCATTATC 77
Query 72 ATCAAATGCAAGATGCAAAGTTTTAAGGACAGGAGCATCATCTAAAGGAAAAGGAAAAGG 131
||||||||||||| ||||| ||||| |||||||| ||||||||||| |||||||||| |
Sbjct 78 ATCAAATGCAAGAGGCAAACTTTTATGGACAGGATCATCATCTAAACCAAAAGGAAAAAG 137
Query 132 GATCAAATAT-C---CG-----GTCGATCGGATAAGCATGCTTCCGGATGAAATGTTACA 182
|||| ||||| | || |||||||||||||||||||||||||||||| |||||||
Sbjct 138 GATCCAATATCCGGTCGATAATGTCGATCGGATAAGCATGCTTCCGGATGAATTGTTACA 197
Query 183 AAAGATCCTTTCGACACTATCAACTAAAGATGCCGTGATAACAAGCACCTTGTCGAAAAG 242
||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||
Sbjct 198 AAAGATCCTTTCGACACTATCGACTAAAGATGCCGTGAAAACAAGCACCTTGTCGAAAAG 257
Query 243 ATGGGTGGATCAGTGGAAGCGCATACCACATCTCTGCGTGGACATGAGAAATATTAT-GA 301
||||||||||||||||||| | | ||||||||||| ||||| ||||||||||||| | ||
Sbjct 258 ATGGGTGGATCAGTGGAAGTGGAGACCACATCTCTCCGTGGGCATGAGAAATATT-TCGA 316
Query 302 GAACAAACCCGACCAGCTATGTTCATGAATTATCTTTCCGCTTTGCTGAATCAATGACGA 361
||||||||||||| ||| | ||| |||| ||||| ||||| ||||||||||||||||||
Sbjct 317 GAACAAACCCGACGAGCCGTCTTCGTGAAATATCTCTCCGCGTTGCTGAATCAATGACGA 376
Query 362 AGACTTTAAACAATCATCGTGGTCATCTAGAGAGCTGCACAATCAGCCATA-TTCAGTT- 419
|||| |||||||||||||||| | ||||||||||||||||||||||||| || | ||
Sbjct 377 GGACTATAAACAATCATCGTGGCCGCCTAGAGAGCTGCACAATCAGCCATATTTTA-TTC 435
Query 420 C-At-t--tttttGTTC-ATCGATAGGTGGATCCAAACAGTGACTCGTGAGAAACAAACC 474
| || | | || | ||||||||||| ||||||||||||||| |||||||||||||
Sbjct 436 CAATGTAAAGATGGTACGCTCGATAGGTGGGTCCAAACAGTGACTCATGAGAAACAAACC 495
Query 475 AAGGAGATTACTCTTGTCAACAATATAGGTTGCATGACACCTTTTGTTAGATATAATAGT 534
|| ||| | |||||||||||| |||||||||||||| |||||| | | ||||||||||
Sbjct 496 AAAGAGCTCACTCTTGTCAACTATATAGGTTGCATGGGACCTTTCGGTGGATATAATAGG 555
Query 535 CTTCACTTGTCCCCAAGTGCATTCTGTCATCCTAGCCTCACTTCACTCTCACTTACTCGA 594
|||||||||||||||||| |||||| ||||||||||||||||||||| ||||||||||||
Sbjct 556 CTTCACTTGTCCCCAAGTACATTCTCTCATCCTAGCCTCACTTCACTGTCACTTACTCGA 615
Query 595 TATAAGTT-ACTCGAGAAAGCCTTCAAGAACTGCTGCAATCTTAAGATCCTGAAGCTTTA 653
|||||||| || |||| ||||||||| ||||||| ||||||||||| ||| |||||||
Sbjct 616 TATAAGTTAAC-AGAGACAGCCTTCAATAACTGCTCCAATCTTAAGACCCTCAAGCTTTT 674
Query 654 TGACATCATGTCCGATGTTAGTGTCCTTAGCA-ACGTTATCAAAGCTTGCTCCTCTCTTG 712
|||||||||||||||||||||||||||||||| | ||| |||||||||||||||||||||
Sbjct 675 TGACATCATGTCCGATGTTAGTGTCCTTAGCAGA-GTTTTCAAAGCTTGCTCCTCTCTTG 733
Query 713 AGGTGCTTGTGTTGCAAATCACATTCTTAAACCAAGCAAGTGCGTTGAAGATCGAAAACA 772
|||||||||||||||||||||||| |||||| | | | ||| |||||||||||| ||||
Sbjct 734 AGGTGCTTGTGTTGCAAATCACATGCTTAAAACTTGGATGTGTGTTGAAGATCGAGAACA 793
Query 773 AGAAATTAGAATTCTTGCAAGTGACTTGGCCTTGTCTGATGAATAGGATGGAAGTGAATA 832
|||| |||||| |||||||||||||||| ||| |||||| |||| |||||||||||||
Sbjct 794 AGAATTTAGAAGTCTTGCAAGTGACTTGCCCTACTCTGATTAATAAGATGGAAGTGAATG 853
Query 833 CACCTCGTTTGGTGATTTTTGACATCAAATCTATCTACTGTTTTGGCTACTCAGTTGAAG 892
|||||||||||| |||| |||||||||||| ||| || ||| | ||| || | |||| |
Sbjct 854 CACCTCGTTTGGAGATTCTTGACATCAAATATATATATTGTGATAGCTTCTTACTTGATG 913
Query 893 CCCCTAAATTAAGCATGTTTAAAAGAGATTATTGGGTTGGTGGGATGAGT-TACCCTCAT 951
| ||| || || ||||||||| |||||||||||| |||||| ||| ||| | |||||||
Sbjct 914 CACCT-AA--AATCATGTTTAATAGAGATTATTGGTTTGGTGCGATTAGTGT-CCCTCAT 969
Query 952 CTTAGCTACCATATATCAAGTCTCGCTCAGGAGAAAATAAGAATTTGGCTTGAGCTTATG 1011
|||||||||||||||||||||| ||||||||||||| ||||||||||||||||||| ||
Sbjct 970 ATTAGCTACCATATATCAAGTCTTGCTCAGGAGAAAAAAAGAATTTGGCTTGAGCTTTTG 1029
Query 1012 GTGAGCCAAATTTATCATATGAAACGG-ACTGGATCCTTATCCGTGAGTGTCGATGTGAG 1070
||||||||| ||||| ||||||||||| | |||||||||||| ||||||||||| |||||
Sbjct 1030 GTGAGCCAATTTTATAATATGAAACGGTA-TGGATCCTTATCAGTGAGTGTCGACGTGAG 1088
Query 1071 AAATCCGAACGAAGTCGAGATTTTGAAGGAAGTCTTACTTTTGTGGGATGGAGAGATGAT 1130
|||||| |||||| || ||||||||||||||||||||||||||||| ||| ||| ||||
Sbjct 1089 AAATCCTAACGAACTCAAGATTTTGAAGGAAGTCTTACTTTTGTGGAATGAAGAAATGAA 1148
Query 1131 GGATCTGGAGATCCTCTTCAAGAACAACAATGCTCCTATAGAAGAAGGTGAATCTTTTAT 1190
||||||||||||| |||||||||||||||||||||||| |||||||||||||||| |||
Sbjct 1149 GGATCTGGAGATCATCTTCAAGAACAACAATGCTCCTAGGGAAGAAGGTGAATCTTCTAT 1208
Query 1191 TACTGGTGGAGCACGTAACAAATGGTGGGATGGTGAAAAACCGTTTCCAGATGATTTCTT 1250
| ||||||||||||||||||||||| ||||||||||||||| |||||||||| ||||||
Sbjct 1209 CAATGGTGGAGCACGTAACAAATGGTTGGATGGTGAAAAACCATTTCCAGATGCTTTCTT 1268
Query 1251 CCGCGTTTGTACTGTGTGGATGTATAATTTCGATGGTTCTAATGAAGAGGAATTTGCATT 1310
||||||| ||||||| |||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 1269 CCGCGTTCGTACTGTATGGATGTATAATTTTGATGGTTCCAATGAAGAGGAATTTGCATT 1328
Query 1311 AGCGTCACGTTTTGTGACACAAGGAACAGTGACTGAAAAGTTGATGATAAAGACATCGAC 1370
||| |||||||||||||||||||||||||||| ||| |||||||||||| ||||||||||
Sbjct 1329 AGCTTCACGTTTTGTGACACAAGGAACAGTGATTGATAAGTTGATGATAGAGACATCGAC 1388
Query 1371 GTATCCTCCAGTGAAGCAATTAATGACAGAAGCAAAAGTGGCCAAGCTAATGGAACTTCC 1430
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1389 GTATCCTCCAGTGAAGCAGTTAATGACAGAAGCAAAAGTGGCCAAGCTAATGGAACTTCC 1448
Query 1431 TAAAGGTTACGAGTA-TTTGGAC-ATTGAATGCTTTTGA 1467
||||||| |||| || ||| || || ||||||||||||
Sbjct 1449 TAAAGGTAACGATTACTTT--ACTATCGAATGCTTTTGA 1485
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54888043045
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5