BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G60800.1
Length=1556
Score E
Sequences producing significant alignments: (Bits) Value
Ahg939123 jgi|Araly1|939123|scaffold_503314.1 1609 0.0
Ahg935494 jgi|Araly1|935494|scaffold_403482.1 915 0.0
> Ahg939123 jgi|Araly1|939123|scaffold_503314.1
Length=964
Score = 1609 bits (871), Expect = 0.0
Identities = 937/968 (97%), Gaps = 7/968 (1%)
Strand=Plus/Plus
Query 299 TTTCGATCGTTGCTTTTGACTATGCATAGATCTGGTACAACAATGGCGTGGAACGTATTC 358
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TTTCGATCGTTGC-TTTGACTATGCATAGATCTGGTACAACAATGGCGTGGAACGTATTC 59
Query 359 AAGTTCTGTACTGCCTTACGAGGTCTTGGATCGATCATGATCCTTTTGGTTCTTGGTGTT 418
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 60 AAATTCTGTACTGCCTTACGAGGTCTTGGATCGATCATGATCCTTTTGGTTCTTGGTGTT 119
Query 419 GTCGGTGTTACTTATTACGCTGTCGTTTTGACTAATTATGGTCCTGCACTCTCTCAAGGT 478
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 120 GTCGGTGTTACTTATTACGCTGTCGTTTTGACTAATTATGGTCCTGCCCTCTCTCAAGGT 179
Query 479 GGCCTTGATTCTCTTGCTGCTCTCACTATCTTAATCCTCTTCCATTTCCTCCTGGCAATG 538
||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||
Sbjct 180 GGCCTTGATTCTCTTGCTGCTCTTACTATCTTAATCCTCTTCCATTTCCTCTTGGCAATG 239
Query 539 CTTTTGTGGAGCTATTTCTCAGTGGTTTTTACTGATCCTGGTGTTGTGCCTCCTAATTGG 598
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 240 CTTTTGTGGAGCTATTTCTCAGTTGTTTTTACTGATCCTGGTGTTGTGCCTCCTAATTGG 299
Query 599 AGACCATCTACTGATGAAGAAAGAGGTGAATCTGATCCGTTAAATAGTTTGGACTTTGTT 658
|||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 300 AGACCATCTACTGATGAAGAAAGAGGTGAATCTGATCCGTTAAACAGTTTGGAGTTTGTT 359
Query 659 GGTTTACAATCCGATTCTTCTTCTTCAAACCCAAGAGTTCGGTTTTGTCGGAAGTGCAAT 718
||||||||| | || ||||||||||||||||||||||||||||||| | |||||||||
Sbjct 360 GGTTTACAAGCTGA---TTCTTCTTCAAACCCAAGAGTTCGGTTTTGTAGAAAGTGCAAT 416
Query 719 CAACTAAAACCTTCTCGTTGTCATCATTGTTCTGTTTGTGGTCGGTGTGTGTTGAAGATG 778
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 417 CAACTAAAACCTTCTCGTTGTCATCATTGTTCTGTTTGTGGTCGGTGTGTGTTGAAGATG 476
Query 779 GATCACCATTGTGTTTGGGTTGTTAACTGTGTAGGAGCACTGAACTATAAGTATTTTCTT 838
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 477 GATCACCATTGTGTTTGGGTTGTTAACTGTGTAGGAGCACTGAATTATAAGTATTTTCTT 536
Query 839 CTTTTCTTGTTCTACACATTTTTAGAGACGACCCTTGTGACTTTGGTTCTTATGCCGCAC 898
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 537 CTTTTCTTGTTCTACACATTTTTAGAGACGACTCTTGTGACTTTGGTTCTTATGCCGCAC 596
Query 899 TTCATTGCATTCTTTAGTGATGAAGAAATACCTGGAACCCCAGGCACTCTTGCTACTACT 958
||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 597 TTCATTGCATTCTTTAGTGATGAAGAAATACCTGGAACCCCGGGAACTCTTGCTACTACT 656
Query 959 TTTCTTGCATTTGTTTTGAACTTGGCATTTGCGTTGAGCGTGATGGGTTTCTTAATTATG 1018
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 657 TTTCTTGCATTTGTTTTGAACTTGGCATTTGCTTTGAGCGTGATGGGTTTCTTAATCATG 716
Query 1019 CATATTTCCTTGGTAGCTGGCAATACCACAACTATAGAGGCATATGAGAAGAAAACCACT 1078
|| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 717 CACATTTCTTTGGTAGCTGGCAATACCACAACTATAGAGGCATATGAGAAGAAAACCAGT 776
Query 1079 ACAAAATGGCGGTATGACCTCGGTAAAAAGAAAAACTTTGAACAGGTATTTGGAATGGAT 1138
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 777 ACAAAATGGCGGTATGACCTCGGTAAAAAGAAAAACTTTGAACAGGTATTTGGAATGGAT 836
Query 1139 AAGAGATACTGGTTAATCCCAGGATACACAGAAGAAGATCTAAGGCGAATGCCGGAGCTG 1198
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 837 AAGAGATACTGGCTAATCCCAGGATACACAGAAGAAGATCTAAGGCGAATGCCGGAGCTG 896
Query 1199 CAGGGACTTGAATACCCTTCGAAACCCGACTTTGATTCCCAGTGATGCTCAAGAA---GA 1255
|||||||| ||||||||||||||||||||||||||||||||||||| || ||||| ||
Sbjct 897 CAGGGACTCGAATACCCTTCGAAACCCGACTTTGATTCCCAGTGATACTGAAGAAAATGA 956
Query 1256 CTTTGATC 1263
||||||||
Sbjct 957 CTTTGATC 964
> Ahg935494 jgi|Araly1|935494|scaffold_403482.1
Length=968
Score = 915 bits (495), Expect = 0.0
Identities = 795/938 (85%), Gaps = 27/938 (3%)
Strand=Plus/Plus
Query 314 TTGACTATGCATAGATCTGGTACAACAATGGCGTGGAACGTATTCAAGTTCTGTACTGC- 372
|||| |||||||||||||||||||||||||||||||||||| ||||| |||||||| ||
Sbjct 15 TTGAGTATGCATAGATCTGGTACAACAATGGCGTGGAACGTCTTCAAATTCTGTACAGCT 74
Query 373 CTTACGAGGTCTTGGATCGATCATGATCCTTTTGGTTCTT-GGTGTTGTCGGTGTTACTT 431
|| |||||| || |||||||||||||||||| |||| ||| || ||||| ||||| || |
Sbjct 75 CT-ACGAGGACTCGGATCGATCATGATCCTTCTGGT-CTTAGGGGTTGTTGGTGTAACCT 132
Query 432 ATTACGCTGTCGTTTTGACTAATTATGGTCCTGCACTCTCTCAAGGTGGCCTTGATTCTC 491
||||||| ||||||| ||| |||||||| |||||||| || | || || || | |||||
Sbjct 133 ATTACGCCGTCGTTTGGACCAATTATGGACCTGCACTATCAGATGGAGGTCTCGGTTCTC 192
Query 492 TTGCTGCTCTCACTATCT-TAATCCTCTTCCA-TTTCCTCCTGGCAATGCTTTTGTGGAG 549
|||||||| | |||| | ||||||| ||||| ||| | |||||||||||||||||||
Sbjct 193 TTGCTGCTTTTGCTAT-TATAATCCTTTTCCACTTTT-TGTTGGCAATGCTTTTGTGGAG 250
Query 550 CTATTTCTCAGTGGTTTTTACTGATCCTGGTGTTGTGCCTCCTAATTGGAGACCATCTAC 609
||||||||| || || ||||||||||||||||||||||||||||||||||| | || |
Sbjct 251 CTATTTCTCTGTTGTGTTTACTGATCCTGGTGTTGTGCCTCCTAATTGGAGGTTAGCTTC 310
Query 610 TGATGAAGAA-A--GAGGTGAATCTGATCCGTTAAATAGTTTGGACTTTGTTG-GT-TTA 664
|| || ||| | |||| || |||||||||||||| |||||||| ||| | | || |||
Sbjct 311 AGACGAGGAACAACGAGGCGAGTCTGATCCGTTAAACAGTTTGGAGTTT-T-GCGTGTTA 368
Query 665 CAATCC-GATTCTTCTTCTTCAAACCCAAGAGTTCGGTTTTGTCGGAAGTGCAATCAAC- 722
|| || |||||||| | || || |||| |||||||||| | || ||||||||||
Sbjct 369 CAG-CCTGATTCTTC--C---AA-CCAAAGAACTCGGTTTTGTAGAAAATGCAATCAACC 421
Query 723 TAAAACCTTCTCGTTGTCATCATTGTTCTGTTTGTGGTCGGTGTGTGTTGAAGATGGATC 782
|||| ||| ||||||| |||||||| |||||||||||||| ||||||||||| ||||| |
Sbjct 422 TAAA-CCTCCTCGTTGCCATCATTGCTCTGTTTGTGGTCGATGTGTGTTGAAAATGGACC 480
Query 783 ACCATTGTGTTTGGGTTGTTAACTGTGTAGGAGCACTGAACTATAAGTATTTTCTTCTTT 842
||||||||||||||||||||| |||||| || ||||| || |||||||||||||||||||
Sbjct 481 ACCATTGTGTTTGGGTTGTTAGCTGTGTCGGGGCACTTAATTATAAGTATTTTCTTCTTT 540
Query 843 TCTTG-TTCTACACATTTTTAGAGACGACCCTTGTGACTTTGGTTCTTATGCCGCACTTC 901
||||| || ||||| ||||| || || || ||||||||| | |||| |||||||||||
Sbjct 541 TCTTGCTT-TACACCTTTTTGGAAACAACTCTTGTGACTCTACTTCTCATGCCGCACTTT 599
Query 902 ATTGCATTCTTTAGTGATGAAGAAATACCTGGAACCCCAGGCACTCTTGCTACTACTTTT 961
|| || |||||||| |||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 600 ATAGCTTTCTTTAGCGATGAAGAGATACCTGGAACCCCAGGCACCCTTGCTACTACTTTT 659
Query 962 CTTGCATTTGTTTTGAACTTGGCATTTGCGTTGAGCGTGATGGGTTTCTTAATTATGCAT 1021
||||||||||| || ||| |||||||||| || || || |||||||||||||| |||||
Sbjct 660 CTTGCATTTGTATTAAACCTGGCATTTGCTTTAAGTGTTATGGGTTTCTTAATCATGCAC 719
Query 1022 ATTTCCTTGGTAGCTGGCAATACCACAACTATAGAGGCATATGAGAAGAAAACCACTACA 1081
||||| ||||| |||| |||||||||||||||||||||||||||||||||||| | | ||
Sbjct 720 ATTTCGTTGGTTGCTGCCAATACCACAACTATAGAGGCATATGAGAAGAAAACAAGTCCA 779
Query 1082 AAATGGCGGTATGACCTCGGTAAAAAGAAAAACTTTGAACAGGTATTTGGAATGGATAAG 1141
||||||| |||||||| ||| |||||||||||||||||| |||||||| ||||||||
Sbjct 780 AAATGGCCATATGACCTTGGTCGAAAGAAAAACTTTGAACAAGTATTTGGTATGGATAAA 839
Query 1142 AGATACTGGTTAATCCCAGGATACACAGAAGAAGATCTAAGGCGAATGCCGGAGCTGCAG 1201
||||||||| | || |||| ||| ||||||||||| |||| ||||||||||| || ||
Sbjct 840 AGATACTGGCTGATTCCAGCCTACTCAGAAGAAGATTTAAGACGAATGCCGGAACTTCAA 899
Query 1202 GGACTTGAATACCCTTCGAAACCCGACTTTGATTCCCA 1239
||||| ||||||||||| ||||| ||||| ||||||||
Sbjct 900 GGACTCGAATACCCTTCCAAACCGGACTTCGATTCCCA 937
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58278074850
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5