BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G60810.1
Length=855
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486553 jgi|Araly1|486553|fgenesh2_kg.5__2545__AT3G60810.1 1273 0.0
> Ahg486553 jgi|Araly1|486553|fgenesh2_kg.5__2545__AT3G60810.1
Length=866
Score = 1273 bits (689), Expect = 0.0
Identities = 814/871 (93%), Gaps = 21/871 (2%)
Strand=Plus/Plus
Query 1 CAAActtcttcttcttcttc-tcttACTCCAAAGAGTAAAGAG-AAATCCGAGCTAGTGA 58
|||||||||||||||||||| |||||||||||||||| ||||| ||||||||||||||||
Sbjct 1 CAAACTTCTTCTTCTTCTTCTTCTTACTCCAAAGAGTTAAGAGAAAATCCGAGCTAGTGA 60
Query 59 AGATGGCTTCCATGGCGTCACCGACCACTTGCTTGT---A-C-C-ACCACAAATGCCGGA 112
|||||||||||||||||||||||||||||||||||| | | | |||||||||||||||
Sbjct 61 AGATGGCTTCCATGGCGTCACCGACCACTTGCTTGTACCACCACAACCACAAATGCCGGA 120
Query 113 GAAAACTTGTTTTCTATGCCCGTCGTATCAGTGCCTCGATTCCAGAGACTTCATATGACA 172
||||||||| || | ||||||||||||| || ||||| ||| |||||| | || ||||||
Sbjct 121 GAAAACTTGGTTCCGATGCCCGTCGTATTAGCGCCTCAATTTCAGAGAATCCAGATGACA 180
Query 173 AACATCCGAAGCTAATTGGTCGAAGAGATATCATTCTTAGGAGCAGTGAATTAGCTATGA 232
||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 181 AACCTCCGAAGCTAATTGGTCGAAGAGAGATCATTCTTAGGAGCAGTGAATTAGCTATGA 240
Query 233 TCGGAGCCATATTCCAGCTTAGTGGGAAAAAACCAGATTATCTAGGAGTACAAAAGAACG 292
||||||| ||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 241 TCGGAGCTATATTCCAGCTCAGTGGGAAAAAACCAGATTATCTAGGAGTGCAAAAGAACG 300
Query 293 AGAGATTGGCTCTATGTCCTGCCACTAATAACTGTATCTCCACTTCTGAGAATATCAGTG 352
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 AGAGATTGGCTCTATGTCCTGCCACTAATAACTGTATCTCCACTTCTGAGAATATCAGTG 360
Query 353 ATCGAGTGCATTATGCTCCACCATGGAACTATAATGGAGGAAGGAAAACACCTGTGAACA 412
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 361 ATCGAGTGCATTATGCTCCACCTTGGAACTATAATGGAGGAAGGAAAACACCTGTGAACA 420
Query 413 GGCAAGTTGCAATGAAAGAGCTTCTTAATGTGATTAAGTCGGTGAAACCGGATAAATTTA 472
| ||||||||||||||||||||||||||||||||||||||||||||||| || || ||||
Sbjct 421 GACAAGTTGCAATGAAAGAGCTTCTTAATGTGATTAAGTCGGTGAAACCTGACAAGTTTA 480
Query 473 CACCGCGGATTGTGGAGAAGAAGGATGACTACGTTCATGTGGAATATGAAAGTCCAATCT 532
| || |||||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 481 CTCCTCGGATTGTGGAGAAGAAGGATGACTATGTTCATGTTGAATATGAAAGTCCAATCT 540
Query 533 TGGGGTTAGTAGACGATGTTGAATTCTTGTTCACTCCTGGGAAGAACTCGAAAGTGGAAT 592
| ||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 541 TAGGGTTAGTAGATGATGTTGAATTCTTGTTCACTCCTGGGAAGAACTCCAAAGTGGAAT 600
Query 593 ATCGATCTGCATCCCGTAAAGGGAACTTCGACTTTGATGTCAATAGAAAGCGAATAAAGG 652
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 601 ATCGATCTGCATCCCGTAAAGGGAACTTCGACTTTGATGTGAATAGAAAGCGAATAAAGG 660
Query 653 CATTGCGACAAGAGCTAGAGAAGAAGGGATGGGTATCAGAGAACAGCTTCTGAAGA-A-A 710
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 661 CATTGCGACAAGAGCTAGAGAAGAAGGGATGGGTATCAGAGAACAGCTTCTGAAGACACA 720
Query 711 -A-GAGTTTCCAGATTCTATTCTTGTCTATTAAATATCTTAATGTGAT-C--TA-TGTAA 764
| |||||||||||||||| ||||||||||| |||||||||||| ||| | | |||||
Sbjct 721 GAAGAGTTTCCAGATTCTAATCTTGTCTATTCAATATCTTAATGCGATGCCCTTGTGTAA 780
Query 765 AAACATTGCCATAAATAGTGAGAGAAACATTGATTTAAGACAAGGATTCGAGTGATTCTC 824
||||||||||||| || | ||||||||| |||||||||||||||||||||||||||||
Sbjct 781 AAACATTGCCATACAT-G--AGAGAAACAGTGATTTAAGACAAGGATTCGAGTGATTCT- 836
Query 825 ATACATAAGGAAACAGTTTTGGAGAAACTTC 855
|||| |||||||||||||||||||||||||
Sbjct 837 -TACAAAAGGAAACAGTTTTGGAGAAACTTC 866
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31642021110
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5