BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G60820.1
Length=1071
Score E
Sequences producing significant alignments: (Bits) Value
Ahg939125 jgi|Araly1|939125|scaffold_503316.1 1179 0.0
Ahg486553 jgi|Araly1|486553|fgenesh2_kg.5__2545__AT3G60810.1 165 6e-40
> Ahg939125 jgi|Araly1|939125|scaffold_503316.1
Length=712
Score = 1179 bits (638), Expect = 0.0
Identities = 686/710 (97%), Gaps = 0/710 (0%)
Strand=Plus/Plus
Query 113 TTCTCTCTCAAATCCGCCATGACTAAACAGCACGCGAACTGGTCTCCTTACGATAACAAT 172
||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||
Sbjct 3 TTCTCTCTCAAATCCACCATGACTAAGCAGCACGCGAACTGGTCTCCTTACGATAACAAT 62
Query 173 GGAGGAACATGTGTGGCCATCGCTGGATCGGATTACTGTGTTATCGCCGCCGATACTCGG 232
|||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 63 GGAGGAACATGTGTGGCCATCGCTGGATCGGATTACTGCGTCATCGCCGCCGATACTCGG 122
Query 233 ATGTCTACTGGTTACAGTATTCTTAGTCGCGATTACTCCAAAATCCATAAACTAGCGGAC 292
|||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| |||
Sbjct 123 ATGTCTACTGGTTACAGTATTCTTAGCCGCGATTACTCAAAAATCCATAAACTAGCAGAC 182
Query 293 AGAGCTGTTTTGTCTTCCTCTGGCTTCCAGGCTGATGTGAAAGCTTTGCAGAAGGTTCTC 352
|||||||| ||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 183 AGAGCTGTGTTGTCTTCCTCTGGCTTTCAGGCTGATGTGAAAGCATTGCAGAAGGTTCTC 242
Query 353 AAATCCAGACACTTGATCTATCAACATCAGCATAACAAGCAGATGAGCTGTCCTGCAATG 412
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 243 AAATCCAGACACTTGATCTATCAGCATCAGCATAACAAGCAGATGAGCTGTCCTGCAATG 302
Query 413 GCCCAGCTTCTCTCCAACACGCTTTATTTCAAGCGGTTTTTCCCCTACTATGCCTTTAAT 472
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 303 GCCCAGCTTCTCTCCAACACGCTTTATTTCAAGCGGTTTTTCCCCTACTATGCCTTTAAT 362
Query 473 GTTCTAGGAGGGCTTGACGAGGAAGGAAAAGGGTGTGTCTTTACTTACGACGCTGTTGGC 532
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 363 GTTCTAGGAGGGCTTGACGAGGAAGGAAAAGGGTGTGTCTTTACTTACGACGCCGTTGGA 422
Query 533 TCATACGAGAGAGTTGGATACGGTGCTCAAGGTTCTGGTTCCACACTCATCATGCCTTTC 592
||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 423 TCATATGAGAGAGTTGGATATGGTGCTCAAGGTTCTGGTTCCACACTCATCATGCCTTTC 482
Query 593 CTTGACAATCAGCTCAAGTCTCCAAGTCCTCTTTTGCTACCTAAACAGGATTCAAACACG 652
|||||||| |||||||||||||||||||||||| ||||||||||||||||||| |||||
Sbjct 483 CTTGACAACCAGCTCAAGTCTCCAAGTCCTCTTCTGCTACCTAAACAGGATTCGAACACA 542
Query 653 CCCCTTTCCGAAGCTGAAGCAGTTGACTTGGTTAAAACTGTTTTCGCATCTGCCACAGAG 712
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 543 CCCCTTTCAGAAGCTGAAGCAGTTGACTTGGTTAAAACTGTTTTCGCATCTGCCACAGAG 602
Query 713 AGGGATATCTACACTGGAGACAAGCTTGAGATTATGATACTTAAGGCCGACGGTATCAAG 772
|||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||
Sbjct 603 AGGGATATCTACACTGGAGACAGGCTTGAGATTATGATACTTAAGGCTGACGGTATCAAG 662
Query 773 ACCGAACTCATGGACCTGAGGAAAGACTAAGCTCCTTTAGTGCATTTAGC 822
||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 663 ACCGAACTCATGGACCTGAGGAAAGACTAAGCTCCTTGCGTGCATTTAGC 712
> Ahg486553 jgi|Araly1|486553|fgenesh2_kg.5__2545__AT3G60810.1
Length=866
Score = 165 bits (89), Expect = 6e-40
Identities = 126/142 (89%), Gaps = 9/142 (6%)
Strand=Plus/Minus
Query 934 GAAGTTTCTCCAAAACTGTTTCCTTATGTATGAGAATCACTCGAATCCTTGTCTTAAATC 993
||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||
Sbjct 866 GAAGTTTCTCCAAAACTGTTTCCTTTTGTA--AGAATCACTCGAATCCTTGTCTTAAATC 809
Query 994 AATGTTTCTCTCACTATTTATGGCAATGTTTTTACATA-G---ATCACATTAAGATATTT 1049
| ||||||||||| | | ||||||||||||||||| | | ||| ||||||||||||
Sbjct 808 ACTGTTTCTCTCA-TGT--ATGGCAATGTTTTTACACAAGGGCATCGCATTAAGATATTG 752
Query 1050 AATAGACAAGAATAGAATCTGG 1071
||||||||||| ||||||||||
Sbjct 751 AATAGACAAGATTAGAATCTGG 730
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39876571182
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5