BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G60830.1
Length=1761
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486557 jgi|Araly1|486557|fgenesh2_kg.5__2549__AT3G60830.1 1954 0.0
> Ahg486557 jgi|Araly1|486557|fgenesh2_kg.5__2549__AT3G60830.1
Length=1280
Score = 1954 bits (1058), Expect = 0.0
Identities = 1219/1293 (94%), Gaps = 26/1293 (2%)
Strand=Plus/Plus
Query 168 TCTTGGCATTTGTGGAAAGTTGGGAATTTAGGGTTTTTGGGTGTGTGTGTGAAAACAATG 227
|||| ||||||||||||||||| |||||||||| |||| || |||||||||||||| |||
Sbjct 1 TCTTCGCATTTGTGGAAAGTTGTGAATTTAGGG-TTTTAGG-GTGTGTGTGAAAACGATG 58
Query 228 GAAGCACTAGTTGTTGATGCTGGCTCTAAGTTCCTGAAAGCAGGAGCAGCAATTCCTGAC 287
|||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 59 GAAGCACTTGTTGTTGATGCTGGCTCTAAGCTCCTGAAAGCAGGAGCAGCAATTCCTGAC 118
Query 288 CAGTCTCCTGCAATGATAATTCCCTCTCAAATGAAACGAATGGTTGATGATGGGTCTTCT 347
||||||||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 119 CAGTCTCCTGCGATGATTATTCCATCTCAAATGAAACGAATGGTTGATGATGGGTCTTCT 178
Query 348 TCAGCTGATAACCCCACCACTGTCTTTGAGGATGTCACTCTTGATCCTATTGAAAGGGGT 407
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 179 TCAGCTGATAACCCCACCACTGTCTTTGAGGATGTCACTCTTGATCCTATTGAACGGGGT 238
Query 408 TTGATTAGAGATTGGGATGCTATGGAAGATCTGTTGCGTTATGTTGTCTACACTGGGCTT 467
|| ||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct 239 TTAATTAGAGATTGGGATGCTATGGAGGATTTGTTGCGTTATGTTGTCTACACTGGGCTT 298
Query 468 GGATGGGAAGAGGGAAACGAAGGCAATATACTTTTTACAGATCCACTTTGTACTCCTAAG 527
||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 299 GGATGGGAAGAGGGAAACGAAGGCAATATACTTTTCACAGATCCACTATGTACTCCTAAG 358
Query 528 GCTATTAGGGAGCAATTGGTGCAGTTGATGTTTGAAACATTCAATGTCTCTGGATTTTAT 587
||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 359 GCTATTAGGGAACAATTGGTGCAATTGATGTTTGAAACATTCAATGTCTCTGGATTTTAT 418
Query 588 GCATCTGAGCAAGCAGTGTTGTCCCTTTATGCTGTTGGACGCATCTCCGGTTGCACTGTT 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 GCATCTGAGCAAGCAGTGTTGTCCCTTTATGCTGTTGGACGCATCTCCGGTTGCACTGTT 478
Query 648 GATATTGGTCATGGGAAGATAGATATTGCCCCAGTTCTTGAAGGTGCAGTACAACACATT 707
|||||||||||||||||||||||||| |||||||||||||||||||| || ||||||||
Sbjct 479 GATATTGGTCATGGGAAGATAGATATCGCCCCAGTTCTTGAAGGTGCCGTTCAACACATC 538
Query 708 GCCTCGAAACGGTTTGAGCTAGGTGGAACCGAGCTAACTAAATTATTTGCCCAAGAGCTT 767
||||||||||||||||||||||||||||| || ||||| |||||||||||||||||||||
Sbjct 539 GCCTCGAAACGGTTTGAGCTAGGTGGAACAGAACTAACAAAATTATTTGCCCAAGAGCTT 598
Query 768 GGAAAAACCAACCCGTCGATGAATCTCAGCATGTCTGATGTTGAAAAACTCAAGGAGCAG 827
|||||| ||||||| |||||||||||||||||| |||||||||||||||| |||||||||
Sbjct 599 GGAAAATCCAACCCTTCGATGAATCTCAGCATGGCTGATGTTGAAAAACTGAAGGAGCAG 658
Query 828 TATGCAAACTGTGCCGAGGACGAAATTGCTTACaaaaaaaCCCAAAACTGTGAAATCGAG 887
||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct 659 TATGCAAACTGTGCCGAGGACGAAATTGCTTACGAGAAAACCCAAAACTGTGAAATCGAG 718
Query 888 CAGCATACTCTTCCTGATGGACAGGTGATAAGCATCGGGCGAGAGAGATACTCGGTTGGA 947
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 719 CAGCATACTCTTCCTGATGGACAGGTGATAAGCATCGGGCGAGAGAGATACTCTGTTGGA 778
Query 948 GAAGCTCTGTTTCAGCCATCAATACTGGGACTGGAGGAGCATGGAATCGTTGAGCAGCTT 1007
|||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 779 GAAGCTTTGTTTCAGCCATCAATACTGGGACTGGAGGAGCACGGAATCGTTGAGCAGCTT 838
Query 1008 GTCCGGATTATCTCCACAGTGTCATCTGAGAACCATAGGCAGCTCTTGGAGAACACTGTA 1067
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 839 GTCCGGATTATCTCTACAGTGTCATCTGAGAACCATAGGCAGCTCTTGGAGAACACTGTA 898
Query 1068 CTTTGTGGTGGTACAACCTCCATGACAGGATTCGAAAGTAGATTCCAGAAAGAAGCAAAC 1127
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 899 CTTTGTGGTGGTACAACCTCCATGACAGGATTCGAAAGTAGATTTCAGAAAGAAGCAAAC 958
Query 1128 TTGTGCTCATCTGCCATTAGGCCAACACTGGTGAAACCGCCAGAATATATGCCGGAGAAT 1187
|||||||||||||| ||||||||||||||||||||||| || ||||||||||| ||||||
Sbjct 959 TTGTGCTCATCTGCTATTAGGCCAACACTGGTGAAACCACCGGAATATATGCCAGAGAAT 1018
Query 1188 TTGGGGATGTATTCGGCTTGGGTTGGAGGAGCCATACTAGCTAAAGTGGTGTTTCCGCAG 1247
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1019 TTGGGGATGTATTCGGCTTGGGTTGGAGGAGCCATACTAGCTAAAGTGGTGTTTCCGCAA 1078
Query 1248 AATCAGCACGTTACTAAAGCAGATTATGACGAGACTGGACCATCAGTGGTTCACAGGAAA 1307
|||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1079 AATCAGCATGTTACTAAAGCAGATTATGACGAGACTGGACCATCAGTGGTTCACCGGAAA 1138
Query 1308 TGTTTCTGAAACCATAGACTATAAAACGATGTTGTTGTTGTAGCTGAGGAtttttttttt 1367
|||||||||||||||| | | | | |||||||||||||||||||||||||||
Sbjct 1139 TGTTTCTGAAACCATA---T-------G-T-T-GTTGTTGTAGCTGAGGATTTTTTTTTT 1185
Query 1368 G-----GTTGGCTTT----G-G-TTTGAAGATGTGGACCAGATTATGTAGTACATTTCAA 1416
||||||||| | | ||||||||| ||||||| ||||||||||| || ||||
Sbjct 1186 TTTTTTGTTGGCTTTTACTGTGATTTGAAGATTTGGACCAAATTATGTAGTAAATCTCAA 1245
Query 1417 ATTATGGCTTCCAAATATCGACTAATATGTGTT 1449
||||||||||||||||||||||||||| |||||
Sbjct 1246 ATTATGGCTTCCAAATATCGACTAATAGGTGTT 1278
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66086575075
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5