BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G60840.1
Length=1947
Score E
Sequences producing significant alignments: (Bits) Value
Ahg899051 jgi|Araly1|899051|Al_scaffold_0005_3017 3088 0.0
> Ahg899051 jgi|Araly1|899051|Al_scaffold_0005_3017
Length=1950
Score = 3088 bits (1672), Expect = 0.0
Identities = 1863/1955 (95%), Gaps = 13/1955 (1%)
Strand=Plus/Plus
Query 1 ATGGGAGAGACTGAGGATGAAAAAGATGCTTCTTTGGCTGATATCGAGAAGGAGTGTCTC 60
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1 ATGGGAGAGACTGAGGATGAAAAAGATGCTGCTTTGGCTGATATCGAGAAGGAGTGTCTC 60
Query 61 TCGGTTTATAAGCGAAAGGTCGAGGAGGCTAGTCGGGGTAAAGCGAATTTGCTGAAAGAA 120
||||||||||||||||| ||||| |||||||||||| ||||||| |||||||||||||||
Sbjct 61 TCGGTTTATAAGCGAAAAGTCGAAGAGGCTAGTCGGTGTAAAGCAAATTTGCTGAAAGAA 120
Query 121 ATCGCTGTTGGCAGAGCAGAAATTGCAGCTATTGGCTCTTCTATGGGTGGACAAGAGATT 180
||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 121 ATCGCTGTTGGAAGAGCAGAAATTGCAGCCATTGGCTCTTCTATGGGTGGACAAGAGATT 180
Query 181 --C---A-TTCTAACAGCAGGTTAGGAGAAAACTTGAAAGAGGAGCTTGAGAATGTTAAT 234
| | |||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 181 CACGAAAGTTCTAACAGCAGGTTAGGAGAAAACTTGAAGGAGGAGCTTGAGAACGTTAAT 240
Query 235 GTGCAATTGGATGGACTGCGCAA-AAGGAAAGCTGAGAGAATGATTCGGTTTAATGAAGT 293
|| ||||| || ||||||||||| || ||||||||||||||||| |||||||||||||||
Sbjct 241 GTTCAATTAGAGGGACTGCGCAAGAA-GAAAGCTGAGAGAATGACTCGGTTTAATGAAGT 299
Query 294 TATCGATCAGTTACTGAAGTTGTCACTGCAACTTGGAAATCCAACAGATTATCTGAAGAA 353
||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct 300 TATCGATCAGTTACTGAAGTTGTCATTTCAACTTGGAAATCCAACAGATTATCTGAAGAA 359
Query 354 GTTTGCTGCTGAAGAGACCGATCTTTCGCTTCAGAGGTTGGAGGAATTGCGTAGCCAGTT 413
||||||||||| ||||||||| |||||||||||| ||||||||||||||||||||| ||
Sbjct 360 TTTTGCTGCTGAGGAGACCGATATTTCGCTTCAGAAGTTGGAGGAATTGCGTAGCCAATT 419
Query 414 GGGTGAGCTCCAAAATGAAAAGAGCAAAAGATTGGAAGAGGTAGAGTGTTTGCTGAAAAC 473
|||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 GGGTGAACTCCAGAATGAAAAGAGCAAAAGATTGGAAGAGGTAGAGTGTTTGCTGAAAAC 479
Query 474 GCTTAACTCGTTGTGCTCGGTTCTTGGTGAAGATTTCAAAGG-CATGATAAGAGGGATAC 532
||| |||||||||||||||||||||||||||||||| | || |||||||||||||||||
Sbjct 480 GCTGAACTCGTTGTGCTCGGTTCTTGGTGAAGATTT-TATGGACATGATAAGAGGGATAC 538
Query 533 ATTCATCTCTGGTTGATTCCAACACTAGGGATGTGAGCAGAAGTACTCTTGATAAGTTGG 592
||| ||||||||||||||| ||||| || |||||||||||||||||||||||||||||||
Sbjct 539 ATTTATCTCTGGTTGATTCTAACACCAGAGATGTGAGCAGAAGTACTCTTGATAAGTTGG 598
Query 593 ATATGATGATTGTGAATTTACGAGAGGCCAAGTTACAGCGAATGCAGAAGGTTCAAGATC 652
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 599 ATATGATGATTGTGAATTTACGAGAGGTCAAGTTACAGCGAATGCAGAAGGTTCAAGATC 658
Query 653 TTGCAGTGTCCTTGTTGGAGCTCTGGAATCTGCTGGACACGCCTGCGGAAGAGCAAAAGA 712
||||||| || |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 659 TTGCAGTCTCTTTGTTGGAACTCTGGAATCTGCTGGACACGCCTGCGGAAGAGCAAAAGA 718
Query 713 TATTTCACAATGTCACATGTAGCATCGCTTTGACTGAGTCTGAAATAACTGAGGCCAACA 772
|||||||||||||||| || |||||||||||| ||||||||||| | || ||||||||||
Sbjct 719 TATTTCACAATGTCACCTGCAGCATCGCTTTGTCTGAGTCTGAAGTCACGGAGGCCAACA 778
Query 773 TACTTTCTGTTGCTTCCATTAAACGCGTTGAGGATGAAGTCATTAGGCTTAGCAAGATCA 832
||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||
Sbjct 779 TACTTTCTGTTGCTTCCATTAAACGCGCTGAGGATGAAGTCATTAGGCTTAGCAAGCTCA 838
Query 833 AAATAACTAAGATCAAAGAGGTGATACTGAGGAAGAGGCTTGAGCTTGAGGAAATATCAA 892
|||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||
Sbjct 839 AAATAACTAAGATCAAAGAGGTGATACTAAGGAAGAAGCTTGAGCTTGAGGAAATATCAA 898
Query 893 GGAAGATGCACATGGCCACCGAAGTTCTTAAATCAGAAAACTTTTCAGTTGAAGCTATAG 952
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 899 GGAAGATGCACATGGCCACCGAAGTTCTTAAATCAGAAAACTTTTCATTTGAAGCTATAG 958
Query 953 AATCTGGTGTCAAGGATCCTGAGCAGTTGTTAGAGCAAATTGATTCCGAGATTGCAAAGG 1012
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 959 AATCTGGTGTCAAGGATCCTGAGCAGTTGTTAGAGCAAATTGATTCCGAGATTGCAAAGG 1018
Query 1013 TCAAAGAGGAAGCTTCAAGCAGGAAGGAGATTCTTGAAAAAGTGGAGAAATGGATGTCAG 1072
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1019 TCAAAGAGGAAGCTTCAAGCAGGAAGGAGATTCTTGAAAAAGTGGAGAAATGGATGTCAG 1078
Query 1073 CTTGTGAAGAAGAGTCTTGGCTGGAAGAGTACAATCGGGATGATAACCGGTACAACGCTG 1132
||||||||||||| |||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 1079 CTTGTGAAGAAGAATCTTGGCTCGAAGAGTACAATCGGGATGATAACCGCTACAACGCTG 1138
Query 1133 GAAGAGGAGCTCATCTTACATTGAAGCGTGCAGAAAAAGCCCGTTTACTTGTCAATAAAC 1192
||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||
Sbjct 1139 GAAGAGGAGCTCATCTTACATTGAAGCGTGCGGAAAAAGCCCGTGTACTTGTCAATAAAC 1198
Query 1193 TTCCTGGGATGGTGGAAGCTTTGACCGCCAAAGTCACTGCTTGGGAGAATGAAAGAGGAA 1252
|||||||||||||||| ||||| |||||||||||||||||||||||| ||||||||||||
Sbjct 1199 TTCCTGGGATGGTGGAGGCTTTAACCGCCAAAGTCACTGCTTGGGAGGATGAAAGAGGAA 1258
Query 1253 ATGAATTCTTATATGATGGGGTCCGAGTCTTATCGATGCTTGGTCAGTACAAGACTGTAT 1312
||||||||||||||||||| |||||||| ||||||||||||| ||||||||||||| |||
Sbjct 1259 ATGAATTCTTATATGATGGTGTCCGAGTTTTATCGATGCTTGATCAGTACAAGACTCTAT 1318
Query 1313 GGGAAGAGAAAGAGCATGAAAAACAGAGACAGAGAGATATGAAGAAACTTCATGGACAAC 1372
|||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||
Sbjct 1319 GGGAAGAGAAAGAGCATGAAAAACAGAGACAGAGAGATCTGAAGAAACTCCATGGACAAC 1378
Query 1373 TCATAACAGAGCAAGAAGCTCTTTATGGGTCTAAACCAAGCCCAAATAAAAGCGGAAAGA 1432
|||||||||| |||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct 1379 TCATAACAGAACAAGAATCCCTTTATGGGTCTAAACCAAGCCCAAATAAAAGCGGAAAGA 1438
Query 1433 AACCACTGAGAACACCAGTAAATGCTGCCATGAACAGAAAACTCTCCCTTGGTGGTGCCA 1492
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1439 AACCACTGAGAACACCAGTAAACGCTGCCATGAACAGAAAACTCTCCCTTGGTGGTGCCA 1498
Query 1493 TGCTTCATCAAAGCTTAAAGCATGAGAAGGCAACACTCAATAGCAAAAGGACGAAGTACT 1552
|||||||||||||||| |||| ||||||||||||||||||||||| |||| |||| ||||
Sbjct 1499 TGCTTCATCAAAGCTTGAAGCCTGAGAAGGCAACACTCAATAGCAGAAGGTCGAATTACT 1558
Query 1553 ATGACCAGAACGCTACTAGTAGAAGAGATTCAGCTCTTCCAACTCTTTCAGGGAGGAGAA 1612
|||||||||||||||||| |||||||||||||||||||||||||| |||||| |||||||
Sbjct 1559 ATGACCAGAACGCTACTAATAGAAGAGATTCAGCTCTTCCAACTCCTTCAGGAAGGAGAA 1618
Query 1613 ACTCAGAGCTTCCTGGTCGTATCAGATCAAAGAACGTTCCGGTTGCAGGAAAAGCTGCGA 1672
||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1619 ACTCAGAACTTCCTGGTCGTATCAGATCAAAGAACGTTTCGGTTGCAGGAAAAGCTGCGA 1678
Query 1673 GATCTCCAATGCTTAGGAAGCCTCTTTCACCTGTCACTTCCAATATCTTGAATTCCCCAG 1732
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1679 GATCTCCAATGCTTAGGAAGCCTCTTTCACCTGTCACTTCCAATATCTTGAATTCCCCAG 1738
Query 1733 AAGATCATCACAAGGATGCTTACACAACAAAGGAGAGAATCTTGACACCTAAAACCAACG 1792
||||||| || | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1739 AAGATCA-CA-A-GGATGCTTACACAACAAAGGAGAGAATCTTGACACCTAAAACCAACG 1795
Query 1793 AAGAAAAGAAAAGAGCTGTTCCAACAACTCCTGCAGCTTCAGTCGCTATGACAGAGGCAA 1852
||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1796 AAGAAAACAAAAGGGCTGTTCCAACAACTCCGGCAGCTTCAGTCGCTATGACAGAGGCAA 1855
Query 1853 CAACGCCGTTCACTCCTGCTGTGGAGAAGAGAATGGATGAGGAAGACGTTATTGTTGAGT 1912
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1856 CAACGCCGTTCACTCCTGCTGTGGAGAAGAGAATGGATGAGGAAGACGTTGTTGTTGAGT 1915
Query 1913 ATTCGTTTGAAGAGGTTAGGGCCGGTTTTTGCTAA 1947
| ||||||||||||||||| ||||||||| |||||
Sbjct 1916 ACTCGTTTGAAGAGGTTAGAGCCGGTTTTCGCTAA 1950
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73171360645
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5