BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G60870.1
Length=798
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486561 jgi|Araly1|486561|fgenesh2_kg.5__2553__AT3G60870.1 1027 0.0
> Ahg486561 jgi|Araly1|486561|fgenesh2_kg.5__2553__AT3G60870.1
Length=792
Score = 1027 bits (556), Expect = 0.0
Identities = 724/803 (90%), Gaps = 19/803 (2%)
Strand=Plus/Plus
Query 1 ATGGATGAGGTATCTCGTTCTCATACACCGCAATTTCTATCAAGTGATCATCAGCACTAT 60
||||||||||| |||||||||||| ||||||| ||| |||||||||||| ||| ||||||
Sbjct 1 ATGGATGAGGTCTCTCGTTCTCATCCACCGCATTTTTTATCAAGTGATCTTCATCACTAT 60
Query 61 CACCATCAAAACGCTGGACGACAAAAACGCGGCAGAGAAGAAGAAGGA-GTTGAACCCAA 119
||||||||||||||| | ||| |||||||| ||||||||||| | || |||||||||||
Sbjct 61 CACCATCAAAACGCT-G--GACTAAAACGCGACAGAGAAGAAG-ACGATGTTGAACCCAA 116
Query 120 CAATATA-GGGGAAGACCTAGCCACCT-TTCCTTCCGGAGAAGAGAATATCAAGAAGAGA 177
||| | || |||||| || || || |||||| | || || |||||||||||||||
Sbjct 117 CAA-CGACGGCAAAGACCAAGACA-CTACTCCTTCAGAAGGAGGGAATATCAAGAAGAGG 174
Query 178 AGGCCACGTGGCAGACCTGCTGGTTCCAAGAACAAACCCAAAGCACCAATCATAGTCACT 237
|| |||||||| ||||| || |||||||| ||||||||||||||||| ||||||||||||
Sbjct 175 AGACCACGTGGAAGACCCGCAGGTTCCAAAAACAAACCCAAAGCACCGATCATAGTCACT 234
Query 238 CGCGACTCCGCGAACGCCTTCAGATGTCACGTCATGGAGATAACCAACGCCTGCGATGTA 297
|||||||| ||||||||||||||||| |||||||||||||||||||||| ||||||||||
Sbjct 235 CGCGACTCTGCGAACGCCTTCAGATGCCACGTCATGGAGATAACCAACGGCTGCGATGTA 294
Query 298 ATGGAAAGCCTAGCCGTCTTCGCTAGACGCCGTCAGCGTGGCGTTTGCGTCTTGACCGGA 357
||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 295 ATGGAAAGCTTAGCCGTCTTCGCTAGACGCCGTCAGCGTGGCGTTTGCGTCTTGACTGGA 354
Query 358 AACGGGGCCGTTACAAACGTCACCGTTAGACAACCTGGCGGAGGCGTCGTCAGTTTACAC 417
||||| ||||||||||||||||| ||||||||||| |||||||||||||| |||||||||
Sbjct 355 AACGGCGCCGTTACAAACGTCACTGTTAGACAACCCGGCGGAGGCGTCGTTAGTTTACAC 414
Query 418 GGACGGTTTGAGATTCTTTCTCTCTCGGGTTCGTTTCTTCCTCCACCGGCACCACCAGCT 477
|||||||| |||||||| ||||||||||| |||||||||||||||||||| ||||| |||
Sbjct 415 GGACGGTTCGAGATTCTCTCTCTCTCGGGCTCGTTTCTTCCTCCACCGGCTCCACCGGCT 474
Query 478 GCGTCTGGTTTAAAGGTTTACTTAGCCGGTGGTCAAGGTCAAGTGATCGGAGGCAGTGTG 537
||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 475 GCGACTGGTTTAACGGTTTACTTAGCCGGTGGTCAAGGTCAAGTGATCGGAGGCAGTTTG 534
Query 538 GTGGGACCGCTTACGGCATCAAGTCCGGTGGTCG-TTATGGCAGCTTCATTTGGAAACGC 596
||||||||||||| ||| ||| |||||||||| | ||||||||||||| |||||||||||
Sbjct 535 GTGGGACCGCTTATGGCTTCAGGTCCGGTGGT-GATTATGGCAGCTTCGTTTGGAAACGC 593
Query 597 ATCTTACGAGAGGCTGCCACTAGAGGAGGAGGAGGAAACTGAAAGAGAAATAGATGGAAA 656
| ||||||||||||||| ||||||||||||||| || |||| |||||||||||||||||
Sbjct 594 AGCTTACGAGAGGCTGCAACTAGAGGAGGAGGA--AA-CTGATAGAGAAATAGATGGAAA 650
Query 657 CGCG-GCTAGGGCGATTGGAACGCAAACGCAGAAACAGTTAATGCAAGATGCGACATCGT 715
||| | || |||| ||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 651 CGCCAG-TATGGCGGTTGGAACGCAAACGCAGAAACAGTTAATGCATGATGCGACATCGT 709
Query 716 TTATT---GGGTCGCCGTCGAATTTAATTAACTCTGTTTCGTTGCCAGGTGAAGCTTATT 772
|| | ||||| |||||||||||||| |||||||||||||||||| ||||||||||||
Sbjct 710 TTGTACAAGGGTCACCGTCGAATTTAATCAACTCTGTTTCGTTGCCAAGTGAAGCTTATT 769
Query 773 GGGGAACGCAACGACCGTCTTTC 795
|||||||||||||||||||||||
Sbjct 770 GGGGAACGCAACGACCGTCTTTC 792
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29469014841
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5