BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G60880.2
Length=1487
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486562 jgi|Araly1|486562|fgenesh2_kg.5__2554__AT3G60880.2 2067 0.0
> Ahg486562 jgi|Araly1|486562|fgenesh2_kg.5__2554__AT3G60880.2
Length=1439
Score = 2067 bits (1119), Expect = 0.0
Identities = 1357/1467 (93%), Gaps = 36/1467 (2%)
Strand=Plus/Plus
Query 29 TTACTTTTGTCGGAATCTGACGTCAGCAT-ACCTGCTACCACTTCCAGAGTTCAATCGAT 87
||||||||| ||||||||||||||||||| ||||| ||||||||||||| |||||||||
Sbjct 1 TTACTTTTGCCGGAATCTGACGTCAGCATGCCCTGCAACCACTTCCAGAGCTCAATCGAT 60
Query 88 CTTCG-CCTCGTTGAAACGTTTTCCCTCTTCGATTATCAACAGTGT-CTCCACTCGTATC 145
||| | |||||||| ||||||| || ||||||||||| ||||||| | ||||| ||||
Sbjct 61 CTT-GACCTCGTTGCGACGTTTT-CCGCTTCGATTATCGACAGTGTGC-CCACTATTATC 117
Query 146 ATCACCGCCTCCAACTAATTTTGCCATCTCTCTCGTTGTTCCAATTTGATTCTACTAGTG 205
|||||| ||| ||||| |||||| | |||||||||| |||| ||||||| | | | |
Sbjct 118 ATCACCTCCTACAACTGATTTTGTCTTCTCTCTCGTCGTTCGAATTTGA-T-T-C---T- 170
Query 206 AGCTCCGATTTAATTTAGGGTTTTGAAAGATGTCAGCTTTGAAAAATTACGGCTTGATCT 265
| | | ||||| ||||||| ||||||||||| | ||||||||||||
Sbjct 171 A----C----T-ATTTA--------AAAGATGGCAGCTTTGAAAGGTCACGGCTTGATCT 213
Query 266 CCATTGATTCTGCCCTCCATTTTCCTCGATCAAATCAATTGCAGAGCTATAAGAGAAGGA 325
||||||| |||||||||||||||||||| ||| |||||||| ||||||| ||||||||||
Sbjct 214 CCATTGACTCTGCCCTCCATTTTCCTCGCTCACATCAATTGGAGAGCTACAAGAGAAGGA 273
Query 326 ATGCAAAATGGGTCTCTCCAATAGCAGCTGTTGTACCTAACTTCCATCTTCCTATGCGCA 385
|||| |||||||||||||||| |||||||||||||||||||||||||||||| |||||||
Sbjct 274 ATGCGAAATGGGTCTCTCCAAAAGCAGCTGTTGTACCTAACTTCCATCTTCCAATGCGCA 333
Query 386 GTCTCGAGGATAAAAACAGGACAAACACAGACGACATAAGGTCCCTTAGAGTGATCACAG 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 334 GTCTCGAGGATAAAAACAGGACAAACACAGACGACATAAGGTCCCTTAGAGTGATCACAG 393
Query 446 CCATTAAGACACCGTATTTACCTGATGGAAGATTCGACCTCCAAGCATACGATGACTTAG 505
||||||||||||||||| ||||||||||||||||||| |||||||| |||||||||||||
Sbjct 394 CCATTAAGACACCGTATCTACCTGATGGAAGATTCGATCTCCAAGCGTACGATGACTTAG 453
Query 506 TCAACACGCAGATAGAAAACGGTGCTGAAGGTGTGATTGTTGGTGGTACAACTGGTGAAG 565
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 454 TCAACACGCAGATAGAAAACGGTGCTGAAGGTGTGATTGTTGGTGGTACAACCGGTGAAG 513
Query 566 GCCAATTGATGAGCTGGGATGAGCACATAATGCTTATCGGCCATACTGTAAATTGTTTTG 625
||||||||||||||||||||||||| ||||||||||| |||||||| |||||||||||||
Sbjct 514 GCCAATTGATGAGCTGGGATGAGCATATAATGCTTATAGGCCATACCGTAAATTGTTTTG 573
Query 626 GGGGAAGGATCAAAGTCATTGGAAACACTGGAAGTAACTCGACTAGGGAAGCTATTCATG 685
| ||||| |||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 574 GCGGAAGAATCAAAGTCATTGGAAACACTGGAAGCAACTCGACTAGGGAAGCTATACATG 633
Query 686 CCACTGAGCAAGGATTCGCCATGGGAATGCACGGGGCACTGCACATTAACCCTTACTATG 745
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 634 CCACTGAGCAAGGATTCGCTGTGGGAATGCACGGGGCACTGCACATTAACCCTTACTATG 693
Query 746 GAAAAACATCCATTGAAGGCATGAATGCGCATTTTCAAACCGTTCTTCATATGGGACCGA 805
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 694 GAAAAACATCCATTGAAGGCATGACCGCGCATTTTCAAACCGTTCTTCATATGGGACCGA 753
Query 806 CTATTATATACAACGTGCCAGGTCGAACGTGCCAGGATATACCTCCCCAGGTTATCTTTA 865
| ||||||||||| ||||||||||||||| | || |||||||||||||||||||||||||
Sbjct 754 CGATTATATACAATGTGCCAGGTCGAACGAGTCAAGATATACCTCCCCAGGTTATCTTTA 813
Query 866 AACTCTCTCAGAACCCTAATATGGCTGGGGTTAAGGAATGCGTTGGTAATAACCGAGTTG 925
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 814 AACTCTCTCGGAACCCTAATATGGCTGGGGTTAAGGAATGCGTTGGTAATAACCGAGTTG 873
Query 926 AAGAGTATACTGAGAAGGGAATTGTCGTTTGGAGTGGAAATGATGATCAGTGCCATGATT 985
|||||||||||||||| |||||||| || |||||||||||||||||||||||||||||||
Sbjct 874 AAGAGTATACTGAGAATGGAATTGTAGTGTGGAGTGGAAATGATGATCAGTGCCATGATT 933
Query 986 CTAGATGGGATCACGGTGCCACTGGAGTGATATCGGTTACTAGCAATTTAGTTCCGGGTT 1045
| |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 934 CAAGATGGGATCACGGCGCAACTGGAGTGATATCGGTTACTAGCAATTTAGTTCCGGGTT 993
Query 1046 TGATGAGGAAGTTGATGTTTGAAGGTAGAAACTCAGCGTTGAACGCAAAGCTTCTTCCTT 1105
||||||||||||| |||||||||||||||||||||||||||||| ||||||| ||||||
Sbjct 994 TGATGAGGAAGTTAATGTTTGAAGGTAGAAACTCAGCGTTGAACTCAAAGCTACTTCCTC 1053
Query 1106 TAATGGATTGGCTATTCCAAGAACCGAATCCCATTGGTGTAAACACTGCTTTGGCTCAGT 1165
||||||||||||||||||||||||| ||||| |||||||| || ||||||||||||||||
Sbjct 1054 TAATGGATTGGCTATTCCAAGAACCCAATCCGATTGGTGTTAATACTGCTTTGGCTCAGT 1113
Query 1166 TAGGAGTTGCGAGGCCGGTTTTTCGGTTACCTTATGTGCCATTGCCTCTGTCCAAAAGGA 1225
|||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1114 TAGGAGTTGCTAGGCCTGTTTTTCGGTTACCTTATGTGCCATTGCCTCTGTCCAAAAGGA 1173
Query 1226 TTGAGTTCGTTAA-ACTGGTGAAGGAAATCGGAAGGGAGCATTTTGTAGGAGACAGAGAT 1284
||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1174 TTGAGTTCG-TAAGGCTGGTGAAGGAAATCGGAAGGGAGCATTTTGTAGGAGACAGAGAT 1232
Query 1285 GTTCAGGTACTTGATGATGATGACTTCATCTTAATCGGTCGATATTAGAGTCTCTTCCCT 1344
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1233 GTTCAGGTACTTGATGATGATGACTTCATCTTAATCGGTCGATATTAGAGTCTCTTCCTT 1292
Query 1345 GAAGATTGGTTGTGTTTATACTTTCTTCGTTCAGTTGTTAGTTATTTAGCTGATGAGAAA 1404
|||||||||||||||||||||| ||||||||||||| |||||||||||||| ||||||||
Sbjct 1293 GAAGATTGGTTGTGTTTATACTCTCTTCGTTCAGTTATTAGTTATTTAGCTTATGAGAAA 1352
Query 1405 CTCACAGATGGATCA-AGACTT---CTACTTGTTGTAATGTTTGGTCTGTTACTTTTGGT 1460
|| |||||||||||| ||| || |||||||||||||||||||||||||||||||||||
Sbjct 1353 CTTACAGATGGATCATAGAGTTGTTCTACTTGTTGTAATGTTTGGTCTGTTACTTTTGGT 1412
Query 1461 GATGAATCTAATGGCTTTTGCTTACTC 1487
||||||||| |||||||||||||||||
Sbjct 1413 GATGAATCTGATGGCTTTTGCTTACTC 1439
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55649847945
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5