BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G60880.2 Length=1487 Score E Sequences producing significant alignments: (Bits) Value Ahg486562 jgi|Araly1|486562|fgenesh2_kg.5__2554__AT3G60880.2 2067 0.0 > Ahg486562 jgi|Araly1|486562|fgenesh2_kg.5__2554__AT3G60880.2 Length=1439 Score = 2067 bits (1119), Expect = 0.0 Identities = 1357/1467 (93%), Gaps = 36/1467 (2%) Strand=Plus/Plus Query 29 TTACTTTTGTCGGAATCTGACGTCAGCAT-ACCTGCTACCACTTCCAGAGTTCAATCGAT 87 ||||||||| ||||||||||||||||||| ||||| ||||||||||||| ||||||||| Sbjct 1 TTACTTTTGCCGGAATCTGACGTCAGCATGCCCTGCAACCACTTCCAGAGCTCAATCGAT 60 Query 88 CTTCG-CCTCGTTGAAACGTTTTCCCTCTTCGATTATCAACAGTGT-CTCCACTCGTATC 145 ||| | |||||||| ||||||| || ||||||||||| ||||||| | ||||| |||| Sbjct 61 CTT-GACCTCGTTGCGACGTTTT-CCGCTTCGATTATCGACAGTGTGC-CCACTATTATC 117 Query 146 ATCACCGCCTCCAACTAATTTTGCCATCTCTCTCGTTGTTCCAATTTGATTCTACTAGTG 205 |||||| ||| ||||| |||||| | |||||||||| |||| ||||||| | | | | Sbjct 118 ATCACCTCCTACAACTGATTTTGTCTTCTCTCTCGTCGTTCGAATTTGA-T-T-C---T- 170 Query 206 AGCTCCGATTTAATTTAGGGTTTTGAAAGATGTCAGCTTTGAAAAATTACGGCTTGATCT 265 | | | ||||| ||||||| ||||||||||| | |||||||||||| Sbjct 171 A----C----T-ATTTA--------AAAGATGGCAGCTTTGAAAGGTCACGGCTTGATCT 213 Query 266 CCATTGATTCTGCCCTCCATTTTCCTCGATCAAATCAATTGCAGAGCTATAAGAGAAGGA 325 ||||||| |||||||||||||||||||| ||| |||||||| ||||||| |||||||||| Sbjct 214 CCATTGACTCTGCCCTCCATTTTCCTCGCTCACATCAATTGGAGAGCTACAAGAGAAGGA 273 Query 326 ATGCAAAATGGGTCTCTCCAATAGCAGCTGTTGTACCTAACTTCCATCTTCCTATGCGCA 385 |||| |||||||||||||||| |||||||||||||||||||||||||||||| ||||||| Sbjct 274 ATGCGAAATGGGTCTCTCCAAAAGCAGCTGTTGTACCTAACTTCCATCTTCCAATGCGCA 333 Query 386 GTCTCGAGGATAAAAACAGGACAAACACAGACGACATAAGGTCCCTTAGAGTGATCACAG 445 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 334 GTCTCGAGGATAAAAACAGGACAAACACAGACGACATAAGGTCCCTTAGAGTGATCACAG 393 Query 446 CCATTAAGACACCGTATTTACCTGATGGAAGATTCGACCTCCAAGCATACGATGACTTAG 505 ||||||||||||||||| ||||||||||||||||||| |||||||| ||||||||||||| Sbjct 394 CCATTAAGACACCGTATCTACCTGATGGAAGATTCGATCTCCAAGCGTACGATGACTTAG 453 Query 506 TCAACACGCAGATAGAAAACGGTGCTGAAGGTGTGATTGTTGGTGGTACAACTGGTGAAG 565 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 454 TCAACACGCAGATAGAAAACGGTGCTGAAGGTGTGATTGTTGGTGGTACAACCGGTGAAG 513 Query 566 GCCAATTGATGAGCTGGGATGAGCACATAATGCTTATCGGCCATACTGTAAATTGTTTTG 625 ||||||||||||||||||||||||| ||||||||||| |||||||| ||||||||||||| Sbjct 514 GCCAATTGATGAGCTGGGATGAGCATATAATGCTTATAGGCCATACCGTAAATTGTTTTG 573 Query 626 GGGGAAGGATCAAAGTCATTGGAAACACTGGAAGTAACTCGACTAGGGAAGCTATTCATG 685 | ||||| |||||||||||||||||||||||||| |||||||||||||||||||| |||| Sbjct 574 GCGGAAGAATCAAAGTCATTGGAAACACTGGAAGCAACTCGACTAGGGAAGCTATACATG 633 Query 686 CCACTGAGCAAGGATTCGCCATGGGAATGCACGGGGCACTGCACATTAACCCTTACTATG 745 ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 634 CCACTGAGCAAGGATTCGCTGTGGGAATGCACGGGGCACTGCACATTAACCCTTACTATG 693 Query 746 GAAAAACATCCATTGAAGGCATGAATGCGCATTTTCAAACCGTTCTTCATATGGGACCGA 805 |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 694 GAAAAACATCCATTGAAGGCATGACCGCGCATTTTCAAACCGTTCTTCATATGGGACCGA 753 Query 806 CTATTATATACAACGTGCCAGGTCGAACGTGCCAGGATATACCTCCCCAGGTTATCTTTA 865 | ||||||||||| ||||||||||||||| | || ||||||||||||||||||||||||| Sbjct 754 CGATTATATACAATGTGCCAGGTCGAACGAGTCAAGATATACCTCCCCAGGTTATCTTTA 813 Query 866 AACTCTCTCAGAACCCTAATATGGCTGGGGTTAAGGAATGCGTTGGTAATAACCGAGTTG 925 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 814 AACTCTCTCGGAACCCTAATATGGCTGGGGTTAAGGAATGCGTTGGTAATAACCGAGTTG 873 Query 926 AAGAGTATACTGAGAAGGGAATTGTCGTTTGGAGTGGAAATGATGATCAGTGCCATGATT 985 |||||||||||||||| |||||||| || ||||||||||||||||||||||||||||||| Sbjct 874 AAGAGTATACTGAGAATGGAATTGTAGTGTGGAGTGGAAATGATGATCAGTGCCATGATT 933 Query 986 CTAGATGGGATCACGGTGCCACTGGAGTGATATCGGTTACTAGCAATTTAGTTCCGGGTT 1045 | |||||||||||||| || |||||||||||||||||||||||||||||||||||||||| Sbjct 934 CAAGATGGGATCACGGCGCAACTGGAGTGATATCGGTTACTAGCAATTTAGTTCCGGGTT 993 Query 1046 TGATGAGGAAGTTGATGTTTGAAGGTAGAAACTCAGCGTTGAACGCAAAGCTTCTTCCTT 1105 ||||||||||||| |||||||||||||||||||||||||||||| ||||||| |||||| Sbjct 994 TGATGAGGAAGTTAATGTTTGAAGGTAGAAACTCAGCGTTGAACTCAAAGCTACTTCCTC 1053 Query 1106 TAATGGATTGGCTATTCCAAGAACCGAATCCCATTGGTGTAAACACTGCTTTGGCTCAGT 1165 ||||||||||||||||||||||||| ||||| |||||||| || |||||||||||||||| Sbjct 1054 TAATGGATTGGCTATTCCAAGAACCCAATCCGATTGGTGTTAATACTGCTTTGGCTCAGT 1113 Query 1166 TAGGAGTTGCGAGGCCGGTTTTTCGGTTACCTTATGTGCCATTGCCTCTGTCCAAAAGGA 1225 |||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 1114 TAGGAGTTGCTAGGCCTGTTTTTCGGTTACCTTATGTGCCATTGCCTCTGTCCAAAAGGA 1173 Query 1226 TTGAGTTCGTTAA-ACTGGTGAAGGAAATCGGAAGGGAGCATTTTGTAGGAGACAGAGAT 1284 ||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1174 TTGAGTTCG-TAAGGCTGGTGAAGGAAATCGGAAGGGAGCATTTTGTAGGAGACAGAGAT 1232 Query 1285 GTTCAGGTACTTGATGATGATGACTTCATCTTAATCGGTCGATATTAGAGTCTCTTCCCT 1344 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 1233 GTTCAGGTACTTGATGATGATGACTTCATCTTAATCGGTCGATATTAGAGTCTCTTCCTT 1292 Query 1345 GAAGATTGGTTGTGTTTATACTTTCTTCGTTCAGTTGTTAGTTATTTAGCTGATGAGAAA 1404 |||||||||||||||||||||| ||||||||||||| |||||||||||||| |||||||| Sbjct 1293 GAAGATTGGTTGTGTTTATACTCTCTTCGTTCAGTTATTAGTTATTTAGCTTATGAGAAA 1352 Query 1405 CTCACAGATGGATCA-AGACTT---CTACTTGTTGTAATGTTTGGTCTGTTACTTTTGGT 1460 || |||||||||||| ||| || ||||||||||||||||||||||||||||||||||| Sbjct 1353 CTTACAGATGGATCATAGAGTTGTTCTACTTGTTGTAATGTTTGGTCTGTTACTTTTGGT 1412 Query 1461 GATGAATCTAATGGCTTTTGCTTACTC 1487 ||||||||| ||||||||||||||||| Sbjct 1413 GATGAATCTGATGGCTTTTGCTTACTC 1439 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 55649847945 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5