BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G60890.2

Length=354
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg899056 jgi|Araly1|899056|Al_scaffold_0005_3022                    462    6e-130


> Ahg899056 jgi|Araly1|899056|Al_scaffold_0005_3022
Length=318

 Score =  462 bits (250),  Expect = 6e-130
 Identities = 299/322 (93%), Gaps = 5/322 (2%)
 Strand=Plus/Plus

Query  34   ATGTGTCTGACAACTTCAGAGCCACCATTCCCAGACACTGACACACCAACTATGAGATC-  92
            |||||||||||| |||||||||||||||||||||||||| |||||||||| |||||||| 
Sbjct  1    ATGTGTCTGACATCTTCAGAGCCACCATTCCCAGACACTCACACACCAACCATGAGATCA  60

Query  93   TGCTTCGTACCATATCAAACATAAATCTAAGACACAAACCCATCTTCGTATCCTTAATCT  152
            | |||||||||| | |||||||||||||||||||||| ||||||||||||||||||||||
Sbjct  61   T-CTTCGTACCACAACAAACATAAATCTAAGACACAATCCCATCTTCGTATCCTTAATCT  119

Query  153  CACCAGCAGGAGGAGAAGATTACTGAAGGAACAGAAGGAGATGGAGATGAGGAACTTGAA  212
            || |  |||||| ||||||||||||||||||||||||| |||||||||||| ||||||||
Sbjct  120  CA-C--CAGGAGAAGAAGATTACTGAAGGAACAGAAGGTGATGGAGATGAGAAACTTGAA  176

Query  213  GCTTTTCGTAGAGAATCAAAGCATCATACGAGAGAATGAAGCTTTAAAAAAGAAAGCTCT  272
            ||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct  177  GCTTTTCGTAGCGAATCAAAGCATCATGCGAGAGAATGAAGCTTTAAAAAAGAAAGCTCT  236

Query  273  TCTTCTCCACCATGAAAACAATGCTCTGTTTGCTCTGCTTCACCCAAAATACTCCCCTGT  332
            |||||||||||| ||||||||||||||||||||||||||||| ||||||  |||||||||
Sbjct  237  TCTTCTCCACCAAGAAAACAATGCTCTGTTTGCTCTGCTTCATCCAAAACCCTCCCCTGT  296

Query  333  TTCAACCTCCTTGCTTCAGTGA  354
            | | ||||||||||||| ||||
Sbjct  297  TGCCACCTCCTTGCTTCTGTGA  318



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 12591344370


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5