BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G60890.2 Length=354 Score E Sequences producing significant alignments: (Bits) Value Ahg899056 jgi|Araly1|899056|Al_scaffold_0005_3022 462 6e-130 > Ahg899056 jgi|Araly1|899056|Al_scaffold_0005_3022 Length=318 Score = 462 bits (250), Expect = 6e-130 Identities = 299/322 (93%), Gaps = 5/322 (2%) Strand=Plus/Plus Query 34 ATGTGTCTGACAACTTCAGAGCCACCATTCCCAGACACTGACACACCAACTATGAGATC- 92 |||||||||||| |||||||||||||||||||||||||| |||||||||| |||||||| Sbjct 1 ATGTGTCTGACATCTTCAGAGCCACCATTCCCAGACACTCACACACCAACCATGAGATCA 60 Query 93 TGCTTCGTACCATATCAAACATAAATCTAAGACACAAACCCATCTTCGTATCCTTAATCT 152 | |||||||||| | |||||||||||||||||||||| |||||||||||||||||||||| Sbjct 61 T-CTTCGTACCACAACAAACATAAATCTAAGACACAATCCCATCTTCGTATCCTTAATCT 119 Query 153 CACCAGCAGGAGGAGAAGATTACTGAAGGAACAGAAGGAGATGGAGATGAGGAACTTGAA 212 || | |||||| ||||||||||||||||||||||||| |||||||||||| |||||||| Sbjct 120 CA-C--CAGGAGAAGAAGATTACTGAAGGAACAGAAGGTGATGGAGATGAGAAACTTGAA 176 Query 213 GCTTTTCGTAGAGAATCAAAGCATCATACGAGAGAATGAAGCTTTAAAAAAGAAAGCTCT 272 ||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 177 GCTTTTCGTAGCGAATCAAAGCATCATGCGAGAGAATGAAGCTTTAAAAAAGAAAGCTCT 236 Query 273 TCTTCTCCACCATGAAAACAATGCTCTGTTTGCTCTGCTTCACCCAAAATACTCCCCTGT 332 |||||||||||| ||||||||||||||||||||||||||||| |||||| ||||||||| Sbjct 237 TCTTCTCCACCAAGAAAACAATGCTCTGTTTGCTCTGCTTCATCCAAAACCCTCCCCTGT 296 Query 333 TTCAACCTCCTTGCTTCAGTGA 354 | | ||||||||||||| |||| Sbjct 297 TGCCACCTCCTTGCTTCTGTGA 318 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 12591344370 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5