BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G60900.1
Length=1880
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486566 jgi|Araly1|486566|fgenesh2_kg.5__2558__AT3G60900.1 2407 0.0
Ahg483684 jgi|Araly1|483684|fgenesh2_kg.4__2744__AT2G45470.1 1142 0.0
> Ahg486566 jgi|Araly1|486566|fgenesh2_kg.5__2558__AT3G60900.1
Length=1841
Score = 2407 bits (1303), Expect = 0.0
Identities = 1702/1883 (90%), Gaps = 74/1883 (4%)
Strand=Plus/Plus
Query 24 TTTTTATCTGAGTGCCTTTTACAAAATTTTGGATGATTATCTAATGAGCATCCATAAATA 83
|||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct 3 TTTTTATCTGAGTGCCTTTTACAAAATTTTGGATGATTATCTAATGAGCATCAACAAATA 62
Query 84 AGCTCAAATTTTAGTT-AGCTACTTGACCATGGTTAACTCTAACAAGGATGAT-A-AATT 140
| |||||| |||||| ||||| ||||||||||||||||||| | ||| || | |||
Sbjct 63 AACTCAAA--TTAGTTAAGCTAGTTGACCATGGTTAACTCTAGC--TGATAATCATAATG 118
Query 141 GATAATGATATAACGGTTCGGTTCGGTTGCTTTTGGAAGAGGACGAACCATA-AAGAAAG 199
|||||||||||||||||| | | | |||||| | | ||||||||||| || ||||
Sbjct 119 GATAATGATATAACGGTT--G--C---T--TTTTGG-A-A-GACGAACCATACAA-AAAG 165
Query 200 AAGCTCAAAGCCCACCCATTTTCGTGATTACAGGCTTTTTAGCAAAAGGAAGC-AGCACG 258
|||| ||||| ||||||||||||||| ||| |||||||| ||| |||| ||||||
Sbjct 166 AAGCCCAAAG----CCCATTTTCGTGATTTCAGACTTTTTAG--AAA--AAGCAAGCACG 217
Query 259 TGTTCTCAAATTAACCATAGTTAACTCTTCAATATAACCATGGTTAACATTTAACctctt 318
|||||| | |||||||||||||||||||| | ||||||||||||||| ||||||||||||
Sbjct 218 TGTTCTTATATTAACCATAGTTAACTCTTTAGTATAACCATGGTTAATATTTAACCTCTT 277
Query 319 cttcttctta-t---taacttca----tcactc-tctttgtcttctcactttctcttctc 369
|||||||||| | |||||||| |||||| | |||||||||||||||| ||||||
Sbjct 278 CTTCTTCTTATTACATAACTTCATTTCTCACTCATAATTGTCTTCTCACTTTCACTTCTC 337
Query 370 CACAGTTCAACTCAACCTTCCAAATTCCAATGGCGACATCACGAGCTTTCACTCTCTTCG 429
|||||||| ||| |||| ||||||||||||||||| ||||||||||||| |||||||||
Sbjct 338 CACAGTTCGACTTAACCGTCCAAATTCCAATGGCGGTATCACGAGCTTTCTCTCTCTTCG 397
Query 430 CTTTCACATTATCTCTCCTCACCGTAGCTTCTACCGTCTCCGGCCATAACATTACTCAAA 489
| ||||| ||||||||||| |||| |||| ||||||||||||||||||||| |||||||
Sbjct 398 CATTCACTTTATCTCTCCTTGCCGTCGCTTATACCGTCTCCGGCCATAACATCACTCAAA 457
Query 490 TCCTCTCTGATACGCCGGAATATTCCTCATTCAACAACTACCTTTCTCAAACAAAACTCG 549
|||| || |||||||||||||||||||||||||||| |||||||||||| ||||| ||||
Sbjct 458 TCCTATCCGATACGCCGGAATATTCCTCATTCAACAGCTACCTTTCTCAGACAAAGCTCG 517
Query 550 CCGACGAAATCAACAGCCGCACTACAATCACCGTCCTTGTTCTCAACAATGGCGCAATGT 609
||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 518 CCGACGAAATCAACAGCCGCACTACCATCACCGTCCTTGTCCTCAACAATGGCGCAATGT 577
Query 610 CTTCCCTCGCCGGAAAACACCCACTCTCCGTCGTCAAAAATGCTCTCAGCCTCCTCGTCC 669
|| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 578 CTGCCCTCGCCGGAAAACATCCACTCTCCGTCGTCAAAAATGCTCTCAGCCTCCTCGTCC 637
Query 670 TCCTCGACTACTACGATCCTTTAAAACTCCATCAGCTCTCTAAAGGCACAACTCTCACCA 729
||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 638 TCCTCGATTACTACGATCCTTTAAAACTCCATCAGCTCTCTAAAGGCTCAACTCTCACCA 697
Query 730 CCACGCTTTACCAAACCACCGGACACGCTCTCGGGAACCTAGGATTCGTTAACGTCACCG 789
|||||||||||||||||||||||||||||| ||| |||||||||||||| ||||||||||
Sbjct 698 CCACGCTTTACCAAACCACCGGACACGCTCCCGGAAACCTAGGATTCGTCAACGTCACCG 757
Query 790 ATCTCAAAGGAGGCAAAGTCGGCTTTGGCTCCGCCGCTCCTGGCTCCAAGCTCGATTCCT 849
|||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| |
Sbjct 758 ATCTCAAAGGAGGCAAAGTCGGATTTGGCTCCGCCGCTCCTGGATCCAAGCTCGATTCTT 817
Query 850 CTTACACCAAATCCGTTAAACAAATCCCTTACAACATCTCCGTTCTCGAAATCAACGCTC 909
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 818 CTTACACCAAATCCGTTAAACAAATCCCTTACAACATCTCCGTTCTCGAAATCAACGCTC 877
Query 910 CGATCATCGCTCCCGGAATCTTAACCGCACCTGCTCCTTCTTCCGCCGGAGTTAGCAACA 969
||||||||||||||||||||||||||||||||||||||||||||| ||| |||| |||||
Sbjct 878 CGATCATCGCTCCCGGAATCTTAACCGCACCTGCTCCTTCTTCCGGCGGTGTTAACAACA 937
Query 970 TCACCGGACTTCTCGAGAAAGCCGGTTGCAAAACCTTCGCGAATTTGCTCGTATCGAGCG 1029
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 938 TCACCGGACTTCTCGAGAAAGCCGGTTGCAAAACCTTCGCGAATTTGCTCGTATCGAGTG 997
Query 1030 GTGTTATTAAAACATTCGAATCCACCGTTGAAAAAGGCTTGACGGTTTTTGCACCGTCCG 1089
||||| ||||||| | ||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 998 GTGTTCTTAAAACCTACGAATCCACCGTTGAAAAAGGTTTGACGGTTTTTGCACCGTCCG 1057
Query 1090 ATGAAGCTTTTAAAGCTAGAGGTGTACCAGATCTGACGAATCTCACACAAGCTGAGGTGG 1149
|||||||||||||||||| ||||||||||||||||||||| ||||| |||||||||||||
Sbjct 1058 ATGAAGCTTTTAAAGCTAAAGGTGTACCAGATCTGACGAACCTCACGCAAGCTGAGGTGG 1117
Query 1150 TCTCGCTCCTAGAGTATCACGCCCTCGCTGAATACAAACCCAAAGGATCGTTAAAGACTA 1209
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||
Sbjct 1118 TCTCGCTCCTAGAGTATCACGCCCTCGCTGAATACAAACCCAAAGGATCGTTGAAGAATA 1177
Query 1210 ACAAAGACGCTATCTCCACTTTAGCCACTAACGGCGCCGGTAAATACGATTTAACGACGT 1269
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1178 ACAAAGACGCTATCTCCACTTTAGCCACTAACGGCGCCGGTAAATACGATTTAACGACGT 1237
Query 1270 CAACTTCCGGTGACGAGGTTATTCTCCATACCGGCGTTGGTCCGTCGAGACTCGCCGACA 1329
||||||| || ||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 1238 CAACTTCTGGCGACGAGGTTATCCTCCATACCGGTGTTGGTCCGTCGAGACTCGCCGACA 1297
Query 1330 CGGTGGTCGATGAGACACCTGTTGTTATATTCACTGTGGATAATGTGCTCCTTCCCGCTG 1389
|||||||||||||||||||||| || |||||||| ||||||||||| ||||| ||| | |
Sbjct 1298 CGGTGGTCGATGAGACACCTGTCGTGATATTCACGGTGGATAATGTACTCCTCCCCACCG 1357
Query 1390 AGCTTTTCGGAAAATCTTCATCGCCGGCGCCGGCACCGG-A--G---CCAGTGAGTGCAC 1443
||||||| ||||| ||| |||| |||||||||||||||| | | |||||||||||||
Sbjct 1358 AGCTTTTTGGAAAGTCTCCATCTCCGGCGCCGGCACCGGCACCGGAGCCAGTGAGTGCAC 1417
Query 1444 CGACACCGACCCCGGCTAA-GTCACCGTCTCCTGTGGAAGCACCTTCTCCAACCGCAGCT 1502
|||| ||| | |||||||| | |||||||||| |||||||||||||||||||| ||||||
Sbjct 1418 CGACCCCGTCTCCGGCTAATG-CACCGTCTCCAGTGGAAGCACCTTCTCCAACTGCAGCT 1476
Query 1503 TCTCCGCCAGCACCACCGGTGGATGAATCTTCACCGGAAGGAGCTCCGTCAGACTCGCCG 1562
|||||||||||||| ||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 1477 TCTCCGCCAGCACCTCCGGTGGATGAATCTTCGCCGGAAGGAGCCCCGTCAGACTCGCCG 1536
Query 1563 ACAAGTTCAGAGAACAGTAATGCGAAAAACGCGGCGTTTCACGTTAACGCTCCTGCGTTG 1622
|||||||||||||||||||||||||||||||| ||||||||||| || ||| ||||||||
Sbjct 1537 ACAAGTTCAGAGAACAGTAATGCGAAAAACGCAGCGTTTCACGTGAAGGCTTCTGCGTTG 1596
Query 1623 TTCACCGCATTGGTCACTATTGCCGCCACATCTCTCTTGTTATAAACAAAACCTTAATTA 1682
|||||||||||||| || ||||||||||||||||||||| ||||| |||||| ||||||
Sbjct 1597 TTCACCGCATTGGTGGCTCTTGCCGCCACATCTCTCTTGTCATAAAAAAAACCGTAATTA 1656
Query 1683 CGAAGACTGCCATTGTCTTCCTTCGACGAGTTTTTATTTCTTTGTGATGCTGTTTGTTAA 1742
|||||||||||||||||| || | || ||||||||| |||||||||||
Sbjct 1657 CGAAGACTGCCATTGTCT-CC--C------TT-------CTTTGTGATTCTGTTTGTTAA 1700
Query 1743 AAACTGGGAATTAGAGTGTTACGGTTTACGTTTAATCTTATTAGTTAATTTAGAATTGGA 1802
| ||||||| ||||||||||| |||||| ||| |||||| |||||||||| || |||||
Sbjct 1701 AGACTGGGA-TTAGAGTGTTAAGGTTTAAGTT-AATCTTTTTAGTTAATTCAGGCTTGGA 1758
Query 1803 TGATTGTTATTGTTTTGTTTTGGT--GT--GTTAGT--T--T-GTAGTAGTGTCGAAATA 1853
|||||||| ||||||||||||||| || ||| || | | |||||||||| ||||||
Sbjct 1759 TGATTGTTTTTGTTTTGTTTTGGTCTGTTCGTTTGTAGTAGTAGTAGTAGTGTTGAAATA 1818
Query 1854 TTGAGATCTTCTAATTGACTAGT 1876
|||||||||||||||| ||||||
Sbjct 1819 TTGAGATCTTCTAATTAACTAGT 1841
> Ahg483684 jgi|Araly1|483684|fgenesh2_kg.4__2744__AT2G45470.1
Length=1545
Score = 1142 bits (618), Expect = 0.0
Identities = 1053/1261 (84%), Gaps = 38/1261 (3%)
Strand=Plus/Plus
Query 399 ATGGCGACATCAC-GAGCTT-TCACTCTCTTCGCTTTCACATTATCTCTCCTCACCGTAG 456
|||||| | |||| || ||| |||||| | |||| ||||| || || |||||| |||| |
Sbjct 51 ATGGCGGCGTCACAGACCTTCTCACTC-C-TCGCCTTCACTTTTTCCCTCCTCGCCGTCG 108
Query 457 CTTCTACCGTCTCCGGCCATAACATTACTCAAATCCTCTCTGATACGCCGGAATATTCCT 516
|||| ||||| |||| ||||| |||||||||||| ||||| | || || || || |
Sbjct 109 CTTCCACCGTGAGTAGCCACAACATCACTCAAATCCTCGCTGATTCTCCTGATTACTCTT 168
Query 517 CATTCAACAACTACCTTTCTCAAACAAAACTCGCCGACGAAATCAACAGCCGCACTACAA 576
| ||||||| |||||||||||| || || ||||||||||| |||||||||||||| || |
Sbjct 169 CCTTCAACAGCTACCTTTCTCAGACGAAGCTCGCCGACGAGATCAACAGCCGCACGACGA 228
Query 577 TCACCGTCCTTGTTCTCAACAATGGCGCAATGTCTTCCCTCGCCGGAAAACACCCACTCT 636
| || ||||| || || |||||||||||||||||| | |||||||||||||| |||||||
Sbjct 229 TTACAGTCCTCGTCCTTAACAATGGCGCAATGTCTGCTCTCGCCGGAAAACATCCACTCT 288
Query 637 CCGTCGTCAAAAATGCTCTCAGCCTCCTCGTCCTCCTCGACTACTACGATCCTTTAAAAC 696
||||| | |||| ||| | ||||||||||| |||||||| ||||||||||| ||||||
Sbjct 289 CCGTCATTAAAAGCGCTTTAAGCCTCCTCGTACTCCTCGATTACTACGATCCACTAAAAC 348
Query 697 TCCATC-AGCTCTCTAAAGGCACAACTCTCACCACCACGCTTTACCAAACCACCGGACAC 755
|||| | || |||| ||||||||||||||| ||||||| |||||||||||||||||| ||
Sbjct 349 TCCA-CAAGATCTCCAAAGGCACAACTCTCTCCACCACACTTTACCAAACCACCGGAAAC 407
Query 756 GCTCTCGGGAACCTAGGATTCGTTAACGTCACCGATCTCAAAGGAGGCAAAGTCGGCTTT 815
|||| ||| |||||||||||||| ||| |||||||||| ||||||||||||||||| |||
Sbjct 408 GCTCCCGGAAACCTAGGATTCGTCAACATCACCGATCTTAAAGGAGGCAAAGTCGGATTT 467
Query 816 GGCTCCGCCGCTCCTGGCTCCAAGCTCGATTCCTCTTACACCAAATCCGTTAAACAAATC 875
|||||||||||| | || ||||| |||||||| |||||||||||||||||||||||||||
Sbjct 468 GGCTCCGCCGCTTCAGGTTCCAAACTCGATTCATCTTACACCAAATCCGTTAAACAAATC 527
Query 876 CCTTACAACATCTCCGTTCTCGAAATCAACGCTCCGATCATCGCTCCCGGAATCTTAACC 935
|||||||||||||| | ||||| ||| | ||||||||||||||||| ||||| ||||||
Sbjct 528 CCTTACAACATCTCAATCCTCGAGATCGATGCTCCGATCATCGCTCCGGGAATTTTAACC 587
Query 936 GCACCTGCTCCTTCTTCCGCCGGAGTTAGCAACATCACCGGACTT-CTCGAGAAAGCCGG 994
|| ||||||||||| ||||| || | |||||||||||| || || |||||||||||
Sbjct 588 GCTCCTGCTCCTTCCGCCGCC-TTGTCA--AACATCACCGGA-TTACTAGAGAAAGCCGG 643
Query 995 TTGCAAAACCTTCGCGAATTTGCTCGTATCGAGCGGTGTTATTAAAACATT-CGAATCCA 1053
|||||||||||| ||||||||||| || || || || ||| | || || || |||||||
Sbjct 644 TTGCAAAACCTTTGCGAATTTGCTTGTCTCAAGTGGAGTTCTCAAGAC-TTACGAATCCG 702
Query 1054 CCGTTGAAAAAGGCTTGACGGTTTTTGCACCGTCCGATGAAGCTTTTAAAGCTAGA-GGT 1112
||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 703 CCGTTGAAAAAGGCTTGACGGTTTTTGCACCGTCCGATGAAGCTTTTAAAGCT-GAAGGT 761
Query 1113 GTACCAGATCTGACGAATCTCACACAAGCTGAGGTGGTCTCGCTCCTAGAGTATCACGCC 1172
||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||
Sbjct 762 GTACCAGATCTGACGAAGCTCACACAAGCTGAGGTGGTCTCGCTCTTAGAGTATCACGCC 821
Query 1173 CTCGCTGAATACAAACCCAAAGGATCGTTAAAGACTAACAAAGA-CGCTATCTCCACTTT 1231
|||||||| || ||||| ||||| || || ||||||||||| || | ||||||||| ||
Sbjct 822 CTCGCTGAGTATAAACCTAAAGGCTCATTGAAGACTAACAA-GAACAATATCTCCACGTT 880
Query 1232 AGCCACTAACGGCGCCGGTAAATACGATTTAACGACGTCAACTTCCGGTGACGAGGTTAT 1291
|||||||| ||||||||| |||| |||| |||| || || || ||||| || || |||||
Sbjct 881 AGCCACTAGCGGCGCCGGGAAATTCGATCTAACTACCTCTACCTCCGGCGATGAAGTTAT 940
Query 1292 TCTCCATACCGGCGTTGGTCCGTCGAGACTCGCCGACACGGTGGTCGATGAGACACCTGT 1351
|||||| |||||||||| ||||||||||||||| ||||| || |||| | ||| || ||
Sbjct 941 TCTCCACACCGGCGTTGCTCCGTCGAGACTCGCGGACACTGTACTCGACGCGACTCCGGT 1000
Query 1352 TGTTATATTCACTGTGGATAATGTGCTCCTTCCC-GCTGAGCTTTTCGGAAAATCTTCAT 1410
||| |||||||| ||||||||||| ||||| ||| |||||||| |||||||||||| ||
Sbjct 1001 TGTGATATTCACCGTGGATAATGTCCTCCT-CCCTGCTGAGCTATTCGGAAAATCTAAAT 1059
Query 1411 CGCCGGCGCCGGCACCGGAGCCAGTGAGTGCACCGACACCGACCCCGGCTAAGTCACCGT 1470
| || | |||||||||| ||| | ||| || | |||| | ||| | |||| |
Sbjct 1060 CTCCTTCTCCGGCACCGGCGCC-G-GAGC-CA--GTTACCG-CACCG---A---CACCAT 1107
Query 1471 CTCCTGTGGAAGCACCTTCTCCAACCGCAGCTTCTCCGCCAGCACCACCGGTGGATGAAT 1530
|||| | ||| | |||||| || ||||| ||||| || || ||||| ||| |||||| |
Sbjct 1108 CTCCGGCGGATGGACCTTCACCCACCGCGGCTTCACCACCGGCACCTCCGACGGATGA-T 1166
Query 1531 CTTCACCGGAAGGAGCTCCGTCAGACTCGCCGACAAGTTCAGAGAACAGTAA-TGCGAAA 1589
| |||| ||| | ||||| ||||||||||||||| |||||| ||||||||| | ||
Sbjct 1167 -T-CACCTGAAAGTGCTCCTTCAGACTCGCCGACAGGTTCAGCGAACAGTAAGT-CGGCT 1223
Query 1590 AACGCGGCGTTTCACGTTAACGCTCC-TGCGTTGTTCACCGCATTGGTCACTATTGCCGC 1648
||||||||| || ||| | | || | ||||||||||||||||||||||||| |||||
Sbjct 1224 AACGCGGCGGTTGGCGTGAGTACACCGT-CGTTGTTCACCGCATTGGTCACTATCGCCGC 1282
Query 1649 C 1649
|
Sbjct 1283 C 1283
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70619314230
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5