BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G60960.1
Length=1513
Score E
Sequences producing significant alignments: (Bits) Value
Ahg939290 jgi|Araly1|939290|scaffold_503481.1 1635 0.0
Ahg939182 jgi|Araly1|939182|scaffold_503373.1 1615 0.0
Ahg939281 jgi|Araly1|939281|scaffold_503472.1 1583 0.0
Ahg897832 jgi|Araly1|897832|Al_scaffold_0005_1798 1005 0.0
> Ahg939290 jgi|Araly1|939290|scaffold_503481.1
Length=1244
Score = 1635 bits (885), Expect = 0.0
Identities = 1124/1237 (91%), Gaps = 25/1237 (2%)
Strand=Plus/Plus
Query 17 ATCAGTCATGTCCCTCCTCCGCCGCATTGTACGAAATTCGACCGTATCAAAGGCTGTTCC 76
||||||||||||| |||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 15 ATCAGTCATGTCCTTCCTACGCCGCATTGTCCGAAATTCGACCGTATCAAAGGCTGTTCC 74
Query 77 GGTTGCGAAGGCGTTCATGCCTTACCCACTAGGAAGAGATCCTTCCTCACTCCCAAAGCT 136
|||||||||||||||||||||||||||||| |||||||| |||||||||||||| |||||
Sbjct 75 GGTTGCGAAGGCGTTCATGCCTTACCCACTCGGAAGAGACCCTTCCTCACTCCCCAAGCT 134
Query 137 TGA-TCCGGTATCCATCAGCTATATCGAT-AGCCGCCCAATTTCTCTGCGCTACAGAGTC 194
||| | ||| || ||||| |||||||| | |||||||||||||||| |||||||||||
Sbjct 135 TGAGTG-GGTCTCGATCAGGAATATCGATGA-CCGCCCAATTTCTCTGGGCTACAGAGTC 192
Query 195 AGGGCAATGATCGAGATGTCTAAT-CTCGACGAAGCCTCGAAGCTCTCGCGGCTAGCTGT 253
| |||||||||||||||||| ||| |||||| |||||||| | |||||||| || |||||
Sbjct 193 ACGGCAATGATCGAGATGTC-AATGCTCGACAAAGCCTCGGATCTCTCGCGCCTCGCTGT 251
Query 254 CTTGAACGGATTTCTAGTCGACAGAGACACCGTCTTCATCTGCAATTCCGTAATCGGCGC 313
| || || ||||| ||| |||||||||||||| ||||||||||||||| |||| |||||
Sbjct 252 CCTGGACAAATTTCGAGTAGACAGAGACACCGTATTCATCTGCAATTCCATAATTGGCGC 311
Query 314 CATGTGTAGCGCCAAACGGTACGACGATGCCATCTCTCTGTTCAATTACTTTTTCAACGA 373
|||||| ||||| |||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 312 CATGTGCAGCGCAAAACGGTACGACGATGCCATCTGTCTGTTCAATTACTTTTTCAACGA 371
Query 374 GTCTCA-GACTCTTCCAAACACGCTCTCCTGCGATCTCATCATCAAAGCACACTGCGACC 432
|||||| | |||| |||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 372 GTCTCAAG-CTCTCCCAAACACGCTCTCCTGCAATCTCATCATCAAAGCACACTGCGACC 430
Query 433 AAGGTCACGTCGACGATGCTCTTGAGCTCTACCGTCACATTTTGCTCGACGGACGTGTAG 492
|||||||||||||| | |||||| |||||||||| ||||||||||||||||||||| |||
Sbjct 431 AAGGTCACGTCGACCACGCTCTTCAGCTCTACCGCCACATTTTGCTCGACGGACGTTTAG 490
Query 493 CTCCAGGGATCGAGACATACATGATACTCGCGAAAGCCTTGGTTGATGCTAAAAGATTCG 552
|||| ||||| |||||||||||||||||| |||||||||||||||||||| || ||||||
Sbjct 491 CTCCGGGGATGGAGACATACATGATACTCACGAAAGCCTTGGTTGATGCTGAACGATTCG 550
Query 553 ATGAAGCTTGTGTTTTGGCGAGATCCATGAGCTGTTGTAGTTTCATGGTCTACGACATTC 612
|||||||||||| ||| | | |||||||||||| ||||||||||||||||||||||||||
Sbjct 551 ATGAAGCTTGTGATTTAGTGGGATCCATGAGCTCTTGTAGTTTCATGGTCTACGACATTC 610
Query 613 TAATTCGCGGGTTCTTGGATATAGGGAATTTCGTAAAGGCTAGCCAAATCTTCGAGGAAT 672
| ||||| ||||||||| || ||||| |||||||||||||||||||||||||| ||||||
Sbjct 611 TGATTCGAGGGTTCTTGTATGTAGGGGATTTCGTAAAGGCTAGCCAAATCTTCAAGGAAT 670
Query 673 TGAAAGGACTGGATAGTAAACTTCCAGGGAGAGAATATCACAAGGCAAATGCAATCTTTA 732
|| | | | | ||||||||||| | ||||||||||||||||||| |||||||||||
Sbjct 671 TG---G-A-T--A--GTAAACTTCCATGTAGAGAATATCACAAGGCAATTGCAATCTTTA 721
Query 733 ATGTTTCGTTTATGAACTATTGGTTCAAGCAAGGCAAAGATGAGGAAGCTATGGAGATTC 792
||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 722 ATGTTTCGTTTATGAACTATTTTTTCAATCAAGGCAAAGATGAGGAAGCTATGGAGATTC 781
Query 793 TCGCAAATCTGGAAGATGCTCAAGTGCTGAACCCCATTGTCGGAAACAGGGTTTTGCAAG 852
|||||| ||||||||| ||||||||| |||| |||||||||||||| |||||||||||||
Sbjct 782 TCGCAACTCTGGAAGAGGCTCAAGTGTTGAAACCCATTGTCGGAAATAGGGTTTTGCAAG 841
Query 853 TTCTGGTGAAGCACGGTaaaaaaaCAGAGGCCTGGGAATTGTTTGGAGAGATGATAGAAA 912
|||| ||| |||||||||| ||||||||||||||||||||||||| ||||||||||||||
Sbjct 842 TTCTTGTGGAGCACGGTAAGAAAACAGAGGCCTGGGAATTGTTTGAAGAGATGATAGAAA 901
Query 913 TTTGTGATTCCGAGACTG-TTGACATAATGTCCGAGTATTTTAGTGAGAAGACTGTACCA 971
| |||||||||||||| | |||||||||||||||| ||||||||||| |||||||| |||
Sbjct 902 TCTGTGATTCCGAGAC-GATTGACATAATGTCCGACTATTTTAGTGAAAAGACTGTGCCA 960
Query 972 TTCGAGCGGCTTAGGAAAACGTGTTATAGGAAGATGATCGTGAGTCTCTGCGAGCATGGA 1031
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 961 TTCGAGCGGCTTAGGAAAACGTGTTATAGGAATATGATCGTGAGTCTCTGCGAGCATGGA 1020
Query 1032 AAAGTGTCAGACGCAGAGAAACTCTTCGCCGAGATGTTTACCGATGTTGACGGAG-GGGA 1090
||||||||||||||||||||||||||||| |||||||||||||| |||||||||| |||
Sbjct 1021 AAAGTGTCAGACGCAGAGAAACTCTTCGCTGAGATGTTTACCGACGTTGACGGAGAGGG- 1079
Query 1091 CTTGTTGGTGGGGCCTGACCTTTTAATATTCAGAGCAATGATCAATGGTTATGTTTCAG- 1149
|||||| |||||||||||| | |||| |||||||||||||||||||||||||||| ||
Sbjct 1080 CTTGTTCGTGGGGCCTGACGTCTTAACATTCAGAGCAATGATCAATGGTTATGTTA-AGG 1138
Query 1150 TAGGGAGAGTGGATGATGCTATCAAGACCTTGAACAAGATGCG-GATTTCAAATCTCAGA 1208
|||||||||| |||||||||||||||||||||||||||||||| | ||| |||| |||||
Sbjct 1139 TAGGGAGAGTCGATGATGCTATCAAGACCTTGAACAAGATGCGAGTTTT-AAATATCAGA 1197
Query 1209 AAGCTTGCTATTCATCAAGCCCCATAAGTTGGATTTG 1245
||||||||||||||| || |||||||||| |||||
Sbjct 1198 AAGCTTGCTATTCATTGTGCACCATAAGTTGCATTTG 1234
> Ahg939182 jgi|Araly1|939182|scaffold_503373.1
Length=1270
Score = 1615 bits (874), Expect = 0.0
Identities = 1143/1269 (90%), Gaps = 34/1269 (3%)
Strand=Plus/Plus
Query 1 AACTGAACCCTAAGTGATCAGTCATGTCCCTCCTCCGCCGCATTGTACGAAATTCGACCG 60
||||||||||||| | | ||||||||||||||||||||||||||| ||||||||||| |
Sbjct 2 AACTGAACCCTAA--G-T-AGTCATGTCCCTCCTCCGCCGCATTGTCCGAAATTCGACGG 57
Query 61 TATCAAAGGCTGTTCC-GGTTGCGAAGGCGTTCATGCCTTACCCACTAGGAAGAGATCCT 119
|||||||||||| ||| ||||||||||||||||| |||||||||||| ||||||||||||
Sbjct 58 TATCAAAGGCTG-TCCTGGTTGCGAAGGCGTTCAAGCCTTACCCACTCGGAAGAGATCCT 116
Query 120 TCCTCACTCCCAAAGCTTGATCCGGTATCCATCAGCTATATCGATAG-CCGCCCAATTTC 178
||||||||||||||||||||| |||| |||||||| |||||||| | ||||||||||||
Sbjct 117 TCCTCACTCCCAAAGCTTGATACGGTCTCCATCAGGGATATCGAT-GACCGCCCAATTTC 175
Query 179 TCTGCGCTACAGAGTCAGGGCAATGATCGAGATGTCTAATCTCGACGAAGCCTCGAAGCT 238
||||||||||||||||| ||| |||||||||||||||| |||||||||||||||||||||
Sbjct 176 TCTGCGCTACAGAGTCACGGCGATGATCGAGATGTCTATTCTCGACGAAGCCTCGAAGCT 235
Query 239 CTCGCGGCTAGCTGTCTTGAACGGATTTCTAGTCGACAGAGACACCGTCTTCATCTGCAA 298
|||||| || ||||||||| || ||||| ||||||| |||||||||| |||||||||||
Sbjct 236 CTCGCGCCTCGCTGTCTTGGACAAATTTCGAGTCGACGGAGACACCGTATTCATCTGCAA 295
Query 299 TTCCGTAATCGGCGCCATGTGTAGCGCCAAACGGTACGACGATGCCATCTCTCTGTTCAA 358
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 296 TTCCGTAATCGGCGCCATGTGCAGCGCCAAACGGTACGACGATGCCATCTCTCTGTTCAA 355
Query 359 TTACTTTTTCAACGAGTCTCAGACTCTTCCAAACACGCTCTCCTGCGATCTCATCATCAA 418
||||||||||||||||||||| ||||| |||||| |||||||||| |||||||||| ||
Sbjct 356 TTACTTTTTCAACGAGTCTCAAACTCTCCCAAACGTGCTCTCCTGCAATCTCATCATGAA 415
Query 419 AGCACACTGCGACCAAGGTCACGTCGACGATGCTCTTGAGCTCTACCGTCACATTTTGCT 478
||||||||||||||||||||||||||| || ||||||||||||||||| |||||||||||
Sbjct 416 AGCACACTGCGACCAAGGTCACGTCGATGAAGCTCTTGAGCTCTACCGCCACATTTTGCT 475
Query 479 CGACGGACGTGTAGCTCCAGGGATCGAGACATACATGATACTCGCGAAAGCCTTGGTTGA 538
|||||||||| ||| |||||||||||||||||||||||||||| | ||||||||||||||
Sbjct 476 CGACGGACGTTTAGTTCCAGGGATCGAGACATACATGATACTCACCAAAGCCTTGGTTGA 535
Query 539 TGCTAAAAGATTCGATGAAGCTTGTGTTTTGGCGAGATCCATGAGCTGTTGTAGTTTCAT 598
|| |||||||||||||||||||||| ||| ||| |||||||||||| ||||||||||||
Sbjct 536 CGCCAAAAGATTCGATGAAGCTTGTGATTTAGCGGGATCCATGAGCTCTTGTAGTTTCAT 595
Query 599 GGTCTACGACATTCTAATTCGCGGGTTCTTGGATATAGGGAATTTCGTAAAGGCTAGCCA 658
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 596 GGTCTACGACATTCTGATTCGCGGGTTCTTGGATATAGGGAATTTCGTAAAGGCTAGCCA 655
Query 659 AATCTTCGAGGAATTGAAAGGACTGGATAGTAAACTTCCAGGGAGAGAATATCACAAGGC 718
||||||| |||||||| ||||||||||||| ||| ||||| ||||||| |||||||||||
Sbjct 656 AATCTTCAAGGAATTGGAAGGACTGGATAGGAAATTTCCATGGAGAGAGTATCACAAGGC 715
Query 719 AAATGCAATCTTTAATGTTTCGTTTATGAACTATTGGTTCAAGCAAGGCAAAGATGAGGA 778
| |||||| ||||||||||||||| ||||||||| ||||||||||| |||||||||||
Sbjct 716 ATTTGCAATTTTTAATGTTTCGTTTGTGAACTATTTTTTCAAGCAAGGTAAAGATGAGGA 775
Query 779 AGCTATGGAGATTCTCGCAAATCTGGAAGATGCTCAAGTGCTGAACCCCATTGTCGGAAA 838
|||||||||||||||||||| |||||||||||||||||| ||||| ||||||||||||||
Sbjct 776 AGCTATGGAGATTCTCGCAACTCTGGAAGATGCTCAAGTACTGAAACCCATTGTCGGAAA 835
Query 839 CAGGGTTTTGCAAGTTCTGGTGAAGCACGGTaaaaaaaCAGAGGCCTGGGAATTGTTTGG 898
|||||||| ||||||| ||| |||||||||| |||||||||||||||||||||||||
Sbjct 836 TAGGGTTTTAAAAGTTCTTGTGGAGCACGGTAAGAAAACAGAGGCCTGGGAATTGTTTGA 895
Query 899 AGAGATGATAGAAATTTGTGATTCCGAGACTG-TTGACATAATGTCCGAGTATTTTAGTG 957
|||||||||| |||| |||||||||||||| | |||||||||||||||||||||||| ||
Sbjct 896 AGAGATGATAAAAATCTGTGATTCCGAGAC-GATTGACATAATGTCCGAGTATTTTATTG 954
Query 958 AGAAGACTGTACCATTCGAGCGGCTTAGGAAAACGTGTTATAGGAAGATGATCGTGAGTC 1017
| || |||||||||||||||||||| |||| |||||||||||||| |||||||| ||||
Sbjct 955 AAAATACTGTACCATTCGAGCGGCTCAGGACAACGTGTTATAGGACGATGATCGCAAGTC 1014
Query 1018 TCTGCGAGCATGGAAAAGTGTCAGACGCAGAGAAACT-CTTCGCCGAGATGTTTACCGA- 1075
||||| ||||||||| ||||| || || |||||| | |||||| ||||||||||||||
Sbjct 1015 TCTGCAAGCATGGAAGAGTGTTGGAGGCCGAGAAA-TACTTCGCAGAGATGTTTACCGAC 1073
Query 1076 --TG---T-T-----GACG--GA-GG-G-G-ACTTGTTGGTGGGGCCTGACCTTTTAATA 1118
|| | | |||| || || | | |||||||||||||||||||||||| || |
Sbjct 1074 GCTGAGATATTTACCGACGTTGATGGAGAGGACTTGTTGGTGGGGCCTGACCTTTCAACA 1133
Query 1119 TTCAGAGCAATGATCAATGGTTATGTTTCAG-TAGGGAG-AGTGGATGATGCTATCAAGA 1176
|||||||||||||||||||| |||||| || ||||| | ||| |||||||||||||||
Sbjct 1134 TTCAGAGCAATGATCAATGGATATGTTA-AGGTAGGG-GCAGTCAATGATGCTATCAAGA 1191
Query 1177 CCTTGAACAAGATGCGGATTTCAAATCTCAGAAAGCTTGCTATTCATCAAGCCCCATAAG 1236
| ||||||||| |||||||||||||| | ||||||||||||||||||| |||||||||||
Sbjct 1192 CTTTGAACAAGTTGCGGATTTCAAATATTAGAAAGCTTGCTATTCATCGAGCCCCATAAG 1251
Query 1237 TTGGATTTG 1245
||| |||||
Sbjct 1252 TTGCATTTG 1260
> Ahg939281 jgi|Araly1|939281|scaffold_503472.1
Length=1256
Score = 1583 bits (857), Expect = 0.0
Identities = 1114/1239 (90%), Gaps = 13/1239 (1%)
Strand=Plus/Plus
Query 17 ATCAGTCATGTCCCTCCTCCGCCGCATTGTACGAAATTCGACCGTATCAAAGGCTGTTCC 76
|||||||||||||| ||| ||||||||| | |||||| |||||||||||| ||| |||||
Sbjct 15 ATCAGTCATGTCCCCCCTACGCCGCATTATCCGAAATGCGACCGTATCAACGGCGGTTCC 74
Query 77 GGTTGCGAAGGCGTTCATGCCTTACCCACTAGGAAGAGATCCTTCCTCACTCCCAAAGCT 136
||||||||||||||||| |||||||||||| |||||||| |||||||||||||| |||||
Sbjct 75 GGTTGCGAAGGCGTTCAAGCCTTACCCACTCGGAAGAGACCCTTCCTCACTCCCCAAGCT 134
Query 137 TGA-TCCGGTATCCATCAGCT-ATATCGATAGCCGCCCAATTTCTCTGCGCTACAGAGTC 194
| | | |||||| | ||| | | | ||||| |||| |||||||||||||||||||||||
Sbjct 135 TAAGT-GGGTATCGACCAG-TGAGACCGATAACCGCTCAATTTCTCTGCGCTACAGAGTC 192
Query 195 AGGGCAATGATCGAGATGTCTAATCTCGACGAAGCCTCGAAGCTCTCGCGGCTAGCTGTC 254
| ||| ||||| ||||||||| ||||||| ||||| |||| ||||| || || ||||||
Sbjct 193 ACGGCGATGATAGAGATGTCTCTTCTCGACAAAGCCGCGAATCTCTCACGACTCGCTGTC 252
Query 255 TTGAACGGA-TTTCTAGTCGACAGAGACACCGTCTTCATCTGCAATTCCGTAATCGGCGC 313
||| || || |||| |||||||||||||||||| ||||||||||||||| |||| |||||
Sbjct 253 TTGGAC-GACTTTCGAGTCGACAGAGACACCGTATTCATCTGCAATTCCATAATTGGCGC 311
Query 314 CATGTGTAGCGCCAAACGGTACGACGATGCCATCTCTCTGTTCAATTACTTTTTCAACGA 373
|||||| ||||| ||||||||||||||||||||||||||||||||||| ||||| ||| |
Sbjct 312 CATGTGCAGCGCAAAACGGTACGACGATGCCATCTCTCTGTTCAATTATTTTTTTAACAA 371
Query 374 GTCTCAGACTCTTCCAAACACGCTCTCCTGCGATCTCATCATCAAAGCACACTGCGACCA 433
|| ||| ||||| |||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 372 GTATCAAACTCTGCCAAACACGCTCTCCTGCAATCTCATCATCAAAGCACACTGCAACCA 431
Query 434 AGGTCACGTCGACGATGCTCTTGAGCTCTACCGTCACATTTTGCTCGACGGACGTGTAGC 493
| ||||||||||||| ||||||||||||||||| | ||||||||||||||||||| ||||
Sbjct 432 ATGTCACGTCGACGACGCTCTTGAGCTCTACCGCCTCATTTTGCTCGACGGACGTTTAGC 491
Query 494 TCCAGGGATCGAGACATACATGATACTCGCGAAAGCCTTGGTTGATGCTAAAAGATTCGA 553
||| |||||||||||||||||| ||||| |||||||||||||||||||| ||||||||||
Sbjct 492 TCCGGGGATCGAGACATACATGTTACTCACGAAAGCCTTGGTTGATGCTGAAAGATTCGA 551
Query 554 TGAAGCTTGTGTTTTGGCGAGATCCATGAGCTGTTGTAGTTTCATGGTCTACGACATTCT 613
|||||||||| ||| | ||| | |||||||| ||||||||||||||||||||||||| |
Sbjct 552 CGAAGCTTGTGATTTAGTGAGTTGCATGAGCTCTTGTAGTTTCATGGTCTACGACATTTT 611
Query 614 AATTCGCGGGTTCTTGGATATAGGGAATTTCGTAAAGGCTAGCCAAATCTTCGAGGAATT 673
||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 612 AATCCGCGGGTTCTTGGATGTAGGGAATTTCGTAAAGGCTAGCCAAATCTTCGAGGAACT 671
Query 674 GAAAGGACTGGATAGTAAACTTCCAGGGAGAGAATATCACAAGGCAAATGCAATCTTTAA 733
||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 672 GAAAGGACTGGATAGTAAACTTCCAGGGAGAGAATATCACACGGCAATTGCAATCTTTAA 731
Query 734 TGTTTCGTTTATGAACTATTGGTTCAAGCAAGGCAAAGATGAGGAAGCTATGGAGATTCT 793
|||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 732 TGTTTCGTTTATGAACTATTTTTTCAATCAAGGCAAAGATGAGGAAGCTATGGAGATTCT 791
Query 794 CGCAAATCTGGAAGATGCTCAAGTGCTGAACCCCATTGTCGGAAACAGGGTTTTGCAAGT 853
||||| ||||||||| ||||||||| |||| |||||||||||||||||||||||| | ||
Sbjct 792 CGCAACTCTGGAAGAGGCTCAAGTGTTGAAACCCATTGTCGGAAACAGGGTTTTGGATGT 851
Query 854 TCTGGTGAAGCACGGTaaaaaaaCAGAGGCCTGGGAATTGTTTGGAGAGATGATAGAAAT 913
||| || ||||||||| | |||||||||||||||||||||| |||||||||||||||
Sbjct 852 TCTTGTCTGGCACGGTAAGGATACAGAGGCCTGGGAATTGTTTGAAGAGATGATAGAAAT 911
Query 914 TTGTGATTCCGAGACTG-TTGACATAATGTCCGAGTATTTTAGTGAGAAGACTGTACCAT 972
|||||||||||||| | |||||||||||||||| ||||||||||| |||||||| ||||
Sbjct 912 CTGTGATTCCGAGAC-GATTGACATAATGTCCGACTATTTTAGTGAAAAGACTGTGCCAT 970
Query 973 TCGAGCGGCTTAGGAAAACGTGTTATAGGAAGATGATCGTGAGTCTCTGCGAGCATGGAA 1032
||||||||||||||||||||||||| | ||| ||||||||||||||||||||||||| ||
Sbjct 971 TCGAGCGGCTTAGGAAAACGTGTTACACGAATATGATCGTGAGTCTCTGCGAGCATGAAA 1030
Query 1033 AAGTGTCAGACGCAGAGAAACTCTTCGCCGAGATGTTTACCGATGTTGACGGAGGGGACT 1092
|||| ||||||||||||||||||||||||||||||||||| || |||||||||| |||||
Sbjct 1031 AAGTATCAGACGCAGAGAAACTCTTCGCCGAGATGTTTACTGACGTTGACGGAGAGGACT 1090
Query 1093 TGTTGGTGGGGCCTGACCTTTTAATATTCAGAGCAATGATCAATGGTTATGTTTCAG-TA 1151
|||| || ||||||||| | |||| ||||||||||||||||||||| |||||| || ||
Sbjct 1091 TGTTCGTAGGGCCTGACGTCTTAACATTCAGAGCAATGATCAATGGATATGTTA-AGGTA 1149
Query 1152 GGGAGAGTGGATGATGCTATCAAGACCTTGAACAAGATGCG-GATTTCAAATCTCAGAAA 1210
|||||| | ||||||||||||| |||||||||||||||||| | ||| | || |||||||
Sbjct 1150 GGGAGATTCGATGATGCTATCATGACCTTGAACAAGATGCGAGTTTT-ATATATCAGAAA 1208
Query 1211 GCTTGCTATTCATCAAGCCCCATAAGTTGGATTTGGTGG 1249
||||||||||||||| || |||||||||| ||||| |||
Sbjct 1209 GCTTGCTATTCATCATGCACCATAAGTTGCATTTG-TGG 1246
> Ahg897832 jgi|Araly1|897832|Al_scaffold_0005_1798
Length=1056
Score = 1005 bits (544), Expect = 0.0
Identities = 731/818 (89%), Gaps = 26/818 (3%)
Strand=Plus/Plus
Query 421 CACACTGCGACCAAGGTCACGTCGACGATGCTCTTGAGCTCTACCGTCACATTTTGCTCG 480
|||||||| ||||| ||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 262 CACACTGCAACCAATGTCACGTCGACGACGCTCTTGAGCTCTACCGCCACATTTTGCTCG 321
Query 481 ACGGACGTGTAGCTCCAGGGATCGAGACATACATGATACTCGCGAAAGCCTTGGTTGATG 540
|||||| | | | |||||| ||||| ||||||||||||||||||
Sbjct 322 ACGGAC-----G-T-------T-------TACATGTTACTCACGAAAGCCTTGGTTGATG 361
Query 541 CTAAAAGATTCGATGAAGCTTGTGTTTTGGCGAGATCCATGAGCTGTTGTAGTTTCATGG 600
|| |||||||||| |||||||||| ||| | ||| |||||||||| ||||||||||||||
Sbjct 362 CTGAAAGATTCGACGAAGCTTGTGATTTAGTGAGTTCCATGAGCTCTTGTAGTTTCATGG 421
Query 601 TCTACGACATTCTAATTCGCGGGTTCTTGGATATAGGGAATTTCGTAAAGGCTAGCCAAA 660
||||||||||| |||| ||||||||||||||| |||||||||||||||||||||||||||
Sbjct 422 TCTACGACATTTTAATCCGCGGGTTCTTGGATGTAGGGAATTTCGTAAAGGCTAGCCAAA 481
Query 661 TCTTCGAGGAATTGAAAGGACTGGATAGTAAACTTCCAGGGAGAGAATATCACAAGGCAA 720
||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 482 TCTTCGAGGAACTGAAAGGACTGGATAGTAAACTTCCAGGGAGAGAATATCACACGGCAA 541
Query 721 ATGCAATCTTTAATGTTTCGTTTATGAACTATTGGTTCAAGCAAGGCAAAGATGAGGAAG 780
|||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 542 TTGCAATCTTTAATGTTTCGTTTATGAACTATTTTTTCAATCAAGGCAAAGATGAGGAAG 601
Query 781 CTATGGAGATTCTCGCAAATCTGGAAGATGCTCAAGTGCTGAACCCCATTGTCGGAAACA 840
|||||||||||||||||| ||||||||| ||||||||| |||| ||||||||||||||||
Sbjct 602 CTATGGAGATTCTCGCAACTCTGGAAGAGGCTCAAGTGTTGAAACCCATTGTCGGAAACA 661
Query 841 GGGTTTTGCAAGTTCTGGTGAAGCACGGTaaaaaaaCAGAGGCCTGGGAATTGTTTGGAG 900
|||||||| | ||||| || ||||||||| | |||||||||||||||||||||| ||
Sbjct 662 GGGTTTTGGATGTTCTTGTCTGGCACGGTAAGGATACAGAGGCCTGGGAATTGTTTGAAG 721
Query 901 AGATGATAGAAATTTGTGATTCCGAGACTG-TTGACATAATGTCCGAGTATTTTAGTGAG 959
||||||||||||| |||||||||||||| | |||||||||||||||| |||||||||||
Sbjct 722 AGATGATAGAAATCTGTGATTCCGAGAC-GATTGACATAATGTCCGACTATTTTAGTGAA 780
Query 960 AAGACTGTACCATTCGAGCGGCTTAGGAAAACGTGTTATAGGAAGATGATCGTGAGTCTC 1019
|||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 781 AAGACTGTGCCATTCGAGCGGCTTAGGAAAACGTGTTATAGGAATATGATCGTGAGTCTC 840
Query 1020 TGCGAGCATGGAAAAGTGTCAGACGCAGAGAAACTCTTCGCCGAGATGTTTACCGATGTT 1079
|||||||||| |||||| ||||||||||||||||||||||||||||||||||| || |||
Sbjct 841 TGCGAGCATGAAAAAGTATCAGACGCAGAGAAACTCTTCGCCGAGATGTTTACTGACGTT 900
Query 1080 GACGGAGGGGACTTGTTGGTGGGGCCTGACCTTTTAATATTCAGAGCAATGATCAATGGT 1139
|||| || ||||||||| |||||||||||| | |||| ||||||||||||||||||||||
Sbjct 901 GACGTAGAGGACTTGTTCGTGGGGCCTGACGTCTTAACATTCAGAGCAATGATCAATGGT 960
Query 1140 TATGTTTCAG-TAGGGAGAGTGGATGATGCTATCAAGACCTTGAACAAGATGCG-GATTT 1197
|| ||| || |||||||| | ||||||||||||| |||||||||||||||||| | |||
Sbjct 961 TACGTTA-AGGTAGGGAGATTCGATGATGCTATCATGACCTTGAACAAGATGCGAGTTTT 1019
Query 1198 CAAATCTCAGAAAGCTTGCTATTCATCAAGCCCCATAA 1235
| || |||||||||||||||||||||| || ||||||
Sbjct 1020 -ATATATCAGAAAGCTTGCTATTCATCATGCACCATAA 1056
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56640194315
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5