BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G60966.1
Length=1049
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486484 jgi|Araly1|486484|fgenesh2_kg.5__2476__AT3G60966.1 1168 0.0
> Ahg486484 jgi|Araly1|486484|fgenesh2_kg.5__2476__AT3G60966.1
Length=940
Score = 1168 bits (632), Expect = 0.0
Identities = 864/971 (89%), Gaps = 35/971 (4%)
Strand=Plus/Plus
Query 48 AAGAGTCTCTCGTTCGTTCTT-CAATCACTTGTTAATAC-TTTTTGTTGGAGGATGTTGA 105
|||||| |||||||||||||| |||||||||||||||| ||||||||||||||||||||
Sbjct 1 AAGAGTATCTCGTTCGTTCTTATAATCACTTGTTAATACTTTTTTGTTGGAGGATGTTGA 60
Query 106 CTCAATCTGTGTATAGAGTTTGCGAATATATCACCGTTTCTATTTTGATTACCTCCGTCG 165
||||||| |||| |||| ||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 61 CTCAATCGGTGTTTAGATTTTGCGAATATATCACCGTTTCTGTTTTGGTTACCTCCGTCG 120
Query 166 CCGTCTTTTCTGAAAGATTCGCCACTTTGATCGTCACAAGTCCATGGCGTCGCCACCGCA 225
| ||||| ||| ||||||||||||||| ||||||||| |||||||||||||| ||||||
Sbjct 121 CGGTCTTCTCTTTAAGATTCGCCACTTTTATCGTCACACGTCCATGGCGTCGCAACCGCA 180
Query 226 CATTCACGTTCCGTCGGTGGAGAGCGGCGGAAAACGATGATTCGTCTCCACCTTTCTGCG 285
||||||||||||| ||||||| | |||||| || || |||||||||| ||||||||||
Sbjct 181 CATTCACGTTCCGCCGGTGGATAACGGCGGCGAATGACCATTCGTCTCCGCCTTTCTGCG 240
Query 286 CCGTGTGTCTACAAGAGGCGGAGGAAGGAGAGAAGATGAGGCGATTGACGATTTGCCGTC 345
|||||||| |||||||||| ||||||||||||||||||| |||||||||||||||||| |
Sbjct 241 CCGTGTGTTTACAAGAGGCAGAGGAAGGAGAGAAGATGAAGCGATTGACGATTTGCCGCC 300
Query 346 ACTGTTTCCACGCGGATTGCATAGATACATGGCTCAGTGAAATGTCCAAGTGTCCGTTGT 405
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 301 ACTGTTTCCACGCGGATTGCATAGATACATGGCTCAGTGAAATGTCTAAGTGTCCGTTGT 360
Query 406 GTAGAGCTCAGATTCCTCCGTTACCGCCGGCAAGTCCTATGCTCTTACTGTTTTTTCCGG 465
|||||||||||||||||||||| |||||||| |||||| |||| || |||||||||||||
Sbjct 361 GTAGAGCTCAGATTCCTCCGTTGCCGCCGGCGAGTCCTCTGCTTTTTCTGTTTTTTCCGG 420
Query 466 CGGGTGTGATTGATTTA-TTCAGCAAGAAAGAATCTCGACGCGTAGCTCTCTAACTTCGA 524
| ||||||||||||||| || ||||| ||||||||||||||||| ||||||||| |||||
Sbjct 421 CCGGTGTGATTGATTTAATT-AGCAACAAAGAATCTCGACGCGTGGCTCTCTAATTTCGA 479
Query 525 ATTCTCTCTGTTTCTTAATTCTCTGTTTATT-TACCTTAAAGTTAATGGGCCTTCATGTG 583
||||||| ||||||||||||||||| | | || | ||||||||||||||||||||||
Sbjct 480 ATTCTCTATGTTTCTTAATTCTCTGAC-ACTGTATCACAAAGTTAATGGGCCTTCATGTG 538
Query 584 ATATCTGACTGTTTCACTTATACAAAGGCAGGCCCAAGATCTTATACGTAACGTAATAAT 643
|||||||| || || ||| || ||| | |||||||||| |||
Sbjct 539 ATATCTGAA-GT--CA----------GGC---CC-AAG--CATATACGTAAC--AAT--- 574
Query 644 CAGTGTGTGTGATATGTTTATCTGTTATCCACATTAATTGCATAGACTACTAAATATATG 703
||||||||||||||||||||| || |||||||||| |||||| |||||||||| ||||||
Sbjct 575 CAGTGTGTGTGATATGTTTATTTGCTATCCACATTCATTGCAGAGACTACTAATTATATG 634
Query 704 CATTTAAGATTACAGTGTATTCAGATGTACTATATTCTTAAATTCATAGGATAAGTAATC 763
||||||||||||||||||||| |||||||||| | ||||||||||||| | | ||||||
Sbjct 635 CATTTAAGATTACAGTGTATTGAGATGTACTAGAATCTTAAATTCATATGTTTGGTAATC 694
Query 764 TATGCAATGAACGTTGACAATTCACAGACTTTAGCATTTGAATTGAGGTGGGGTCTTTTT 823
| || |||||| || |||||| ||| ||||| |||||||||||||||||||| |||||||
Sbjct 695 TGTGAAATGAATGTGGACAATCCACGGACTTCAGCATTTGAATTGAGGTGGG-TCTTTTT 753
Query 824 CTAATGTACTTTTTTGCATTTTTCCAAAGTTAAGAAAAAGGCAAGTTGATGACGCAGCTA 883
||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 754 CTAATGTG-TTTTTTGTATTTTTCCAAAGTTAAGAAAAAGGCAAGTTGATGACGCAGCTA 812
Query 884 AACATATATGAAGAAAAAGGACCGAAACAGCCAAGAAACTCACGTGGAAATCACTAACAT 943
||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 813 AACATAT--GAAGAAAAAGGACCGAAACAGCCAAGAAACTCACGTGGAGATCACTAACAT 870
Query 944 ATGTGTACATGACAAGACATAATTCATACAAAATTTAATAATATTTTTGTTTGTCAATTT 1003
|||||| ||||||||||||||||||||||| | ||| |||||||||| ||||||||||||
Sbjct 871 ATGTGTCCATGACAAGACATAATTCATACATATTTTTATAATATTTT-GTTTGTCAATTT 929
Query 1004 AACACATATAT 1014
|||||||||||
Sbjct 930 AACACATATAT 940
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39037867008
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5