BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G60980.1
Length=1437
Score E
Sequences producing significant alignments: (Bits) Value
Ahg899199 jgi|Araly1|899199|Al_scaffold_0005_3165 1509 0.0
Ahg899104 jgi|Araly1|899104|Al_scaffold_0005_3070 1426 0.0
Ahg897839 jgi|Araly1|897839|Al_scaffold_0005_1805 1271 0.0
Ahg939179 jgi|Araly1|939179|scaffold_503370.1 1092 0.0
> Ahg899199 jgi|Araly1|899199|Al_scaffold_0005_3165
Length=1224
Score = 1509 bits (817), Expect = 0.0
Identities = 1113/1251 (89%), Gaps = 39/1251 (3%)
Strand=Plus/Plus
Query 68 ATGTCTCTGATCGGCCGCCTCAATCTTGGTCGGCGCTTCTGCACCGCCGTGCCAAGAAGA 127
|||||||||||| |||||||||||||| ||||||| |||| ||||||| |||||||||||
Sbjct 1 ATGTCTCTGATCTGCCGCCTCAATCTTTGTCGGCGTTTCTCCACCGCCCTGCCAAGAAGA 60
Query 128 TCGGAAGACATAATGTCAAACCCAGATTGCCG-CCCTTCTG-ATCTATGCTTGAGGGTCT 185
|||| ||||||||||||||||||||||| || ||| | | | ||||||||||| ||||
Sbjct 61 GCGGAGGACATAATGTCAAACCCAGATTGTCGTCCC-GC-GCAGCTATGCTTGAGAGTCT 118
Query 186 CGTACTTGATCAGATGCGTTGGGGATCTCGACACGGCGGCGAAGTACGCTCGTTTGGCTG 245
||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||
Sbjct 119 CGTACTTGATCAGATTCGTTGGAGATCTCGACACGGCGGCGAAGTACGCTCGTTTGGCTG 178
Query 246 TTTTCACC-AGCATCAAATCGGAGTCAACAACAACAATATGTCAATCCATCATCGGAGGC 304
|||||||| | ||||||||||||| | ||| || ||| ||||||| ||||||||||||||
Sbjct 179 TTTTCACCGA-CATCAAATCGGAGGCCACAGCAGCAACATGTCAAGCCATCATCGGAGGC 237
Query 305 ATGTTACGGGATAAAAGGCTCAAGGACGCTTATGATCTCTACGAGTTCTTCTTCAATCAG 364
||||| | | ||||||||| | | |||||||| ||||||||||| ||||||||||||||
Sbjct 238 ATGTTGCAGAATAAAAGGCACGATGACGCTTACGATCTCTACGATTTCTTCTTCAATCA- 296
Query 365 CAT-AACCTCAGACCCAACAGCCATTGCTGGAACTACATCATCGAATCTGGTTTCCAACA 423
| | || ||||||||||||||||||||||| |||||||||||||||||| ||||| ||||
Sbjct 297 CTTTAAGCTCAGACCCAACAGCCATTGCTGTAACTACATCATCGAATCTCGTTTCAAACA 356
Query 424 AGGTCTT-GTCAACGATGCTCT-GCATTTCCACCACCGATGCATC-AATTCCGGTCA-GG 479
|||| || || |||| ||||| | |||||||||||||| |||| ||| | ||| | ||
Sbjct 357 AGGT-TTAGTTGACGAAGCTCTCGG-TTTCCACCACCGATCCATCGAAT-CTGGT-ATGG 412
Query 480 TCCACGACTACCCAAGCGACGATTCTTTCAGGATCTTGACTAAAGGGTTAGTCCACTCCG 539
||||||||||||||||| ||||| |||||||| |||||||||||||||||||||||||||
Sbjct 413 TCCACGACTACCCAAGCAACGATACTTTCAGGGTCTTGACTAAAGGGTTAGTCCACTCCG 472
Query 540 GTCGGTTGGACCAAGCCGAAGCCTTTCTTAGAGGCAGGACAGTCAATCGAACCACCTACC 599
|||| || ||||||||||||||| | ||||||| |||||||||| || | | || |||||
Sbjct 473 GTCGATTAGACCAAGCCGAAGCCATGCTTAGAGACAGGACAGTCGATAGGATCATCTACC 532
Query 600 CAGATCACGTGGCGTACAACAATCTGATTCGCGGGTTTTTGGATCTTGGAAATTTTAAA- 658
|||||||||||||||||||| |||||||||||||||||||||||||||| ||||| |
Sbjct 533 CAGATCACGTGGCGTACAACTATCTGATTCGCGGGTTTTTGGATCTTGGGAATTT-AGGC 591
Query 659 AAGGCGAATCTAGTCTTGGGCGAATTCAAACGCTTGTTT-TTGATTGCCCTATCCGAGAC 717
||||||||||||||| ||| ||||||||||||||||||| || ||| |||| || |||||
Sbjct 592 AAGGCGAATCTAGTCCTGGACGAATTCAAACGCTTGTTTCTT-ATTACCCTCTCTGAGAC 650
Query 718 CAAAGATGATTTGCACCATTCAAACTATGAAAACAGAGTCGCATTCCTGATGGCCACATT 777
||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||
Sbjct 651 CAAAGATGATTTGCACCATTCAAACTATGAAAACAGAGTGGCATTCGTGATGGCCACATT 710
Query 778 CATGGAGTACTGGTTTAAGCAAGGTAAACAGGTGGAAGCTATGGAGTGTTACAACCGCTG 837
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
Sbjct 711 CATGGAGTACTGGTTTAAGCAAGGTAAAGAGGTGGAAGCTATGGAGTGTTACAACCGTTC 770
Query 838 TGTTCTATCAAACAGGTTACTGGTTTGTGCCGAAACGGGTAACGCCCTTTTGAAAGTCCT 897
||||||||||||||||||||||| |||||||||||||| ||||||||||||| ||||||
Sbjct 771 TGTTCTATCAAACAGGTTACTGGCTTGTGCCGAAACGGCTAACGCCCTTTTGGTAGTCCT 830
Query 898 GCTCAAATACGGTGaaaaaaaaaaTGCTTGGGCATTGTACCATGA-ACTCTTAGATAAAA 956
||||||||||||||| |||||| |||||||||||||||||||||| | ||||||||||||
Sbjct 831 GCTCAAATACGGTGAGAAAAAACATGCTTGGGCATTGTACCATGATA-TCTTAGATAAAA 889
Query 957 ATGGAACCGGTAAGGGTTGCTTGGACTCTGATACCATTAAGATAATGGTGGACGAGTGCT 1016
| | | || ||| || ||||||||||||||||||||||||||||||| |
Sbjct 890 GT--A---G--AA------CTT--ACCCTGATACCATTAAGATAATGGTGGACGAGTGTT 934
Query 1017 TTGATATGGGTTGGTTTAGTGAGGCTATGGAGACCTACAAAAAGGCGAGACCCAAGAACG 1076
||||||||||| | ||||| ||||||||| |||||||||| ||||||||| ||||||||
Sbjct 935 TTGATATGGGTCGATTTAGGGAGGCTATGAAGACCTACAACAAGGCGAGAGCCAAGAACC 994
Query 1077 ACTACCTCAGTGACAAATACATTATTACAAGGTTTTG-CGAAAACAGGATGTTGTCAGAA 1135
| ||||||||||||| ||||||| |||||| || ||| | ||||| ||||||||||||||
Sbjct 995 ATTACCTCAGTGACATATACATTTTTACAAAGTGTTGTC-AAAACGGGATGTTGTCAGAA 1053
Query 1136 GCAGAGTCTGTTTTTGTTGATTCACTTGCTGATGATTTTGGATATATTGATGTTAACACT 1195
||||||||| | |||| ||||||||||||||||||||| | ||| ||||||||| |||||
Sbjct 1054 GCAGAGTCTATCTTTGCTGATTCACTTGCTGATGATTTCGCATACATTGATGTTGACACT 1113
Query 1196 TATAAAACAATGATCGATGCTTATGTGAAGGCTGGGAGAATACATGATGCTATAAAAACC 1255
| |||||||||||| ||| |||||||||||||||||||||| ||||||||||||||||||
Sbjct 1114 TCTAAAACAATGATGGATTCTTATGTGAAGGCTGGGAGAATCCATGATGCTATAAAAACC 1173
Query 1256 TCCAACAAGATGATCGATGCAACTCTAAAGGAGGTCTCCCATCTCTTTTGA 1306
||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1174 TCCAACAAGATGATCGATGCAACTCTACAGGAGGTCTCCCATCTCTTTTGA 1224
> Ahg899104 jgi|Araly1|899104|Al_scaffold_0005_3070
Length=1242
Score = 1426 bits (772), Expect = 0.0
Identities = 1114/1270 (88%), Gaps = 59/1270 (5%)
Strand=Plus/Plus
Query 68 ATGTCTCTGATCGGCCGCCTCAATCTTGGTCGGCGCTTCTGCACCGCCGTGCCAAGAAGA 127
|||||||||||| |||||||||||||||||||||| |||| ||||||| |||||||||||
Sbjct 1 ATGTCTCTGATCTGCCGCCTCAATCTTGGTCGGCGTTTCTCCACCGCCCTGCCAAGAAGA 60
Query 128 TCGGAAGACATAATGTCAAACCCAGATTGCCGCCCTTCTG-ATCTATGCTTGAGGGTCTC 186
|||| |||||||||||||||||||||||||| ||| | | | ||||||||||| ||| |
Sbjct 61 GCGGAGGACATAATGTCAAACCCAGATTGCCGTCCTAC-GCAGCTATGCTTGAGAGTCAC 119
Query 187 GTACTTGATCAGATGCGTTGGGGATCTCGACACGGCGGCGAAGTACGCTCGTTTGGCTGT 246
|||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 120 GTACTTGATCAGATTCGTTGGAGATCTCGACACGGCGGCGAAGTACGCTCGTTTGGCTGT 179
Query 247 TTTCACCAGCA-TCAAATCGGAGTCAACAACAACA-ATATGTCAATCCATCATCGGAGGC 304
||||||||| | ||||||||||| | |||| || | | ||||||||||||||||||||||
Sbjct 180 TTTCACCAG-ATTCAAATCGGAGACCACAATAA-AGACATGTCAATCCATCATCGGAGGC 237
Query 305 ATGTTACGGGATAAAAGGCTCAAGGACGCTTATGATCTCTACGAGTTCTTCTTCAATCAG 364
||||| ||||||||||||| | |||| ||||| ||||||| ||| |||||||||||| ||
Sbjct 238 ATGTTGCGGGATAAAAGGCCCGAGGATGCTTACGATCTCTTCGATTTCTTCTTCAATGAG 297
Query 365 CATAACCTCAGACCCAACAGCCATTGCTGGAACTACAT-CATCGAATCTGGTTTCCAACA 423
||||| || | || |||||||||||||||||||||||| | ||||||||||||| |||||
Sbjct 298 CATAAGCTAATACGCAACAGCCATTGCTGGAACTACATGC-TCGAATCTGGTTTACAACA 356
Query 424 AGGTC-TTGTCAACGATGCTCTGC-ATTTCCACCACCGATGCATC-AATTCCGGT-CAG- 478
||| | |||| |||||||||| | | || ||||||| | || |||| ||| ||
Sbjct 357 AGG-CGTTGTTGACGATGCTCT-CGAATTGTACCACCGGCCCTTCAAATT-TGGTAAAGA 413
Query 479 -GTCCACGACTACCCAAGCGA-CGATTCTTTCAGGATCTTGACTAAAGGGTTAGTCCACT 536
||||||||||||||| | |||| |||||||| || |||||||||||||||||||||
Sbjct 414 AATCCACGACTACCCAA-ATACCGATACTTTCAGGGTCATGACTAAAGGGTTAGTCCACT 472
Query 537 CCGGTCGGTTGGACCAAGCCGAAGCCTTTCTTAGAGGCAGGACAGTCAATCGAACCACCT 596
||||||| |||||| ||||||||||| | ||||||| ||||| |||| || | | || ||
Sbjct 473 CCGGTCGATTGGACGAAGCCGAAGCCGTGCTTAGAGACAGGAAAGTCGATAGGATCATCT 532
Query 597 ACCCAGATCACGTGGCGTACAACAATCTGATTCGCGGGTTTTTGGATCTTGGAAATTTTA 656
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 533 ACCCAGATCACGTGGCGTACAACAATCTGATTCGCGGGTTTTTGGATCTTGGGAATTT-A 591
Query 657 AA-AAGGCGAATCTAGTCTTGGGCGAATTCAAACGCTTGTTTTTGATTGCCCTATCCGAG 715
| |||||| |||||||||||| ||||||||| ||||||||||||||||| || ||||||
Sbjct 592 GACAAGGCGCATCTAGTCTTGGACGAATTCAAGCGCTTGTTTTTGATTGCTCTTTCCGAG 651
Query 716 ACCAAAGATGATTTGCACCATTCAAACTATGAAAACAGAGTCGCATTCCTGATGGCCACA 775
|||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||
Sbjct 652 ACCAAAGATGATTTGCACCATTCAAACTATGAAAGCAGAGTCGCATTCGTGATGGCCACA 711
Query 776 TTCATGGAGTACTGGTTTAAGCAAGGTAAACAGGTGGAAGCTATGGAGTGTTACAACCGC 835
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 712 TTCATGGAGTACTGGTTTAAGCAAGGTAAAGAGGTGGAAGCTATGGAGTGTTACAACCGT 771
Query 836 TGTGTTCTATCAAACAGGTTACTGGTTTGTGCCGAAACGGGTAACGCCCTTTTGAAAGTC 895
| ||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||
Sbjct 772 TCTGTTCTATCAAACAGGTTACTTGTTTGTGCCGAAACGGGTAACGCCCTTTTGGTAGTC 831
Query 896 CTGCTCAAATACGGTGaaaaaaaaaaTGCTTGGGCATTGTACCATGAACTCTTAGATAAA 955
||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||
Sbjct 832 CTGCTCAAATACGGTGAGAAAAAACATGCTTGGGCATTGTACCATGAACTCTTAGAT--- 888
Query 956 AATGGAACCGGTAAGGGTTGCTTGGACTCTGATACCATTAAGATAATGGTGGACGAGTGC 1015
| ||| | || | | | ||||||||||||||||||||||||||||||||||
Sbjct 889 ---G-AAC-G-TA-GAA---CA-G-ACTCTGATACCATTAAGATAATGGTGGACGAGTGT 936
Query 1016 TTTGATATGGGTTGGTTTAGTGAGGCTATGGAGACCTACAAAAAGGCGAGACCCAAGAAC 1075
|||||||||||| | || | |||||||||||||||||||| ||||||||| ||||||||
Sbjct 937 TTTGATATGGGTCGACTTGGCGAGGCTATGGAGACCTACAAGAAGGCGAGAGCCAAGAAC 996
Query 1076 GA-CTACCT-C-AGT-----G-A--CAA--A----TACATTATTACAAGGTTTTGCGAAA 1118
| || | | | | | | | ||| | |||||||| ||||||| ||||||||
Sbjct 997 -ATCT-CTTTCTATTTTACTGTATTCAATGACGGATACATTATCACAAGGTGTTGCGAAA 1054
Query 1119 ACAGG-ATGTTGTCAGAAGCAGAGTCTGTTTTTGTTGATTCACTTGCTGATGATTTTGGA 1177
|| || ||||||||||||||||||||||| |||||||||||||||||||||||| |||||
Sbjct 1055 AC-GGCATGTTGTCAGAAGCAGAGTCTGTCTTTGTTGATTCACTTGCTGATGATATTGGA 1113
Query 1178 TATATTGATGTTAACACTTATAAAACAATGATCGATGCTTATGTGAAGGCTGGGAGAATA 1237
|| |||||||||| |||| ||||||||||||||||||||||||||||||||| |||||
Sbjct 1114 TACGTTGATGTTAAGACTTTTAAAACAATGATCGATGCTTATGTGAAGGCTGGAAGAAT- 1172
Query 1238 C-ATGATGCTATAAAAACCTCCAACAAGATGATCGATGCAACTCTAAAGGAGGTCTCCCA 1296
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1173 CGATGATGCTATAAAAACCTCCAACAAGATGATCGATGCAACTCTAAAGGAGGTCTCCCA 1232
Query 1297 TCTCTTTTGA 1306
||||||||||
Sbjct 1233 TCTCTTTTGA 1242
> Ahg897839 jgi|Araly1|897839|Al_scaffold_0005_1805
Length=1218
Score = 1271 bits (688), Expect = 0.0
Identities = 1076/1256 (86%), Gaps = 55/1256 (4%)
Strand=Plus/Plus
Query 68 ATGTCTCTGATCGGCCGCCTCAA---TCTTGGTCGGCGCTTCTGCACCGCCGTGCCAAGA 124
||||||| |||| |||||||||| |||||||||||| |||| | ||||| |||||||
Sbjct 1 ATGTCTCAGATCTGCCGCCTCAATCTTCTTGGTCGGCGTTTCTTCGCCGCCATGCCAAGC 60
Query 125 AGATCGGAA-GACATAATGTCAAACCCAGATTGCCG-CCCTTCTG-ATCTATGCTTGAGG 181
||| | ||| || ||||||||||||||||||||||| ||| | | | |||||||||||
Sbjct 61 AGA-CCGAAGGAGATAATGTCAAACCCAGATTGCCGTCCC-GC-GCAGCTATGCTTGAGA 117
Query 182 GTCTCGTACTTGATCAGATGCGTTGGGGATCTCGACACGGCGGCGAAGTACGCTCGTTTG 241
||| ||||||||||||||| |||||| |||||||||||||||||||||||||||||||||
Sbjct 118 GTCACGTACTTGATCAGATTCGTTGGTGATCTCGACACGGCGGCGAAGTACGCTCGTTTG 177
Query 242 GCTGTTTTCACCAGCATCAAATCGGAGTCAACAACAACAATATGTCAATCCATCATCGGA 301
||||||||||||||||||||||||||| | ||| || ||| ||||||| |||||||||||
Sbjct 178 GCTGTTTTCACCAGCATCAAATCGGAGGCCACAGCAGCAACATGTCAAGCCATCATCGGA 237
Query 302 GGCATGTTACGGGATAAAAGGCTCAAGGACGCTTATGATCTCTACGAGTTCTTCTTCAAT 361
|||||||| | | ||||||||| | | |||||||| ||||||||||| ||||||||||||
Sbjct 238 GGCATGTTGCAGAATAAAAGGCACGATGACGCTTACGATCTCTACGATTTCTTCTTCAAT 297
Query 362 CAGCAT-AACCTCAGACCCAACAGCCATTGCTGGAACTACATCATCGAATCTGGTTTCCA 420
|| | | || ||||||||||||||||||||||| |||||||||||||||||| ||||| |
Sbjct 298 CA-CTTTAAGCTCAGACCCAACAGCCATTGCTGTAACTACATCATCGAATCTCGTTTCAA 356
Query 421 ACAAGGTCTT-GTCAACGATGCTCT-GCATTTCCACCACCGATGCATC-AATTCCGGTCA 477
||||||| || || |||| ||||| | ||||||| |||||| |||| ||| | ||| |
Sbjct 357 ACAAGGT-TTAGTTGACGAAGCTCTCGG-TTTCCACAACCGATCCATCGAAT-CTGGT-A 412
Query 478 -GGTCCACGACTACCCAAGCGACGATTCTTTCAGGATCTTGACTAAAGGGTTAGTCCACT 536
||||||||||||||||||| | ||| |||| ||| ||||||||||| |||||||||||
Sbjct 413 TGGTCCACGACTACCCAAGCCAGGATACTTTTAGGGTCTTGACTAAATGGTTAGTCCACG 472
Query 537 CCGGTCGGTTGGACCAAGCCGAAGCCTTTCTTAGAGGCAGGACAGTCAATCGAACCACCT 596
||||||| |||||||||| |||||||| ||||||| |||||||||| | | |||||||
Sbjct 473 CCGGTCGAATGGACCAAGCGGAAGCCTTGCTTAGAGACAGGACAGTCGGTAGGACCACCT 532
Query 597 ACCCAGATCACGTGGCGTACAACAATCTGATTCGCGGGTTTTTGGATCTTGGAAATTTTA 656
|||||||||||||||||||||| ||||||||||| ||||||||||||||||| |||| |
Sbjct 533 ACCCAGATCACGTGGCGTACAAGAATCTGATTCGTGGGTTTTTGGATCTTGGGGATTT-A 591
Query 657 AA-AAGGCGAATCTAGTCTTGGGCGAATTCAAACGCTTGTTTT-TGATTGCCCTATCCGA 714
| |||||| |||||||||||| ||||||||||||||| |||| | ||||||||||||||
Sbjct 592 GACAAGGCGGATCTAGTCTTGGCCGAATTCAAACGCTTATTTTCT-ATTGCCCTATCCGA 650
Query 715 GACCAAAGATGATTTGCACCATTCAAACTATGAAAACAGAGTCGCATTCCTGATGGCCAC 774
|||||||||||||| || | | ||||||||||||||||||||| |||||||||||
Sbjct 651 GACCAAAGATGATT--CA--A---A--CTATGAAAACAGAGTCGCATTTCTGATGGCCAC 701
Query 775 ATTCATGGAGTACTGGTTTAAGCAAGGTAAACAGGTGGAAGCTATGGAGTGTTACAACCG 834
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 702 GTTCATGGAGTACTGGTTTAAGCAAGGTAAAGAGGTGGAAGCTATGGAGTGTTACAACCT 761
Query 835 CTGTGTTCTATCAAACAGGTTACTGGTTTGTGCCGAAACGGGTAACGCCCTTTTGAAAGT 894
|||||| || |||||| ||||| |||||| | ||||| || |||||||||||||||||
Sbjct 762 TTGTGTTATAGCAAACAAGTTACCGGTTTGCACAGAAACTGGCAACGCCCTTTTGAAAGT 821
Query 895 CCTGCTCAAATACGGTGaaaaaaaaaaTGCTTGGGCATTGTACCATGAACTCTTAGATAA 954
|||||||||||||||||| |||||| |||||||||| |||||||||||||||||||||||
Sbjct 822 CCTGCTCAAATACGGTGAGAAAAAACATGCTTGGGCTTTGTACCATGAACTCTTAGATAA 881
Query 955 AAATGGAACCGGTAAGGGTTGCTTGGACTCTGATACCATTAAGATAATGGTGGACGAGTG 1014
| || | | || | | || |||||||||||||||||||| | ||||||||
Sbjct 882 A---GGTA--G--AA------CA-G-ACCCTGATACCATTAAGATAATGATAGACGAGTG 926
Query 1015 CTTTGATATGGGTTGGTTTAGTGAGGCTATGG-AGACCTACAAAAAGGCGAGACCCAAGA 1073
|||||||||||| | ||||| |||||| ||| |||||||||| ||||| || ||||||
Sbjct 927 TTTTGATATGGGTCGATTTAGCGAGGCT-TGGGAGACCTACAACAAGGCTAGTGCCAAGA 985
Query 1074 ACGACTACCTCAGTGACAAATACATTATTACAAGGTTTTGCGAAAACAGGATGTTGTCAG 1133
|| ||| ||||||||||| |||||||||||||||||||||| ||||| ||||||| ||||
Sbjct 986 ACCACTTCCTCAGTGACAGATACATTATTACAAGGTTTTGCCAAAACGGGATGTTATCAG 1045
Query 1134 AAGCAGAGTCT-GT-TTTTGTTGATTCACTTGCTGATGATTTTGGATATATTGATGTTAA 1191
||||| ||| | || |||| |||||||||| |||||||| || || |||||||||||
Sbjct 1046 AAGCACAGT-TAGTCTTTTAC-GATTCACTTGAAGATGATTTAGGCTACATTGATGTTAA 1103
Query 1192 CACTTATAAAACAATGATCGATGCTTATGTGAAGGCTGGGAGAATAC-ATGATGCTATAA 1250
|| || ||||||| |||| ||||||| ||| |||| |||| | |||||||||| |
Sbjct 1104 CATTTTTAAAACACTGATTGATGCTTTTGTCAAGGATGGGTTCCC-CGATGATGCTATCA 1162
Query 1251 AAACCTCCAACAAGATGATCGATGCAACTCTAAAGGAGGTCTCCCATCTCTTTTGA 1306
||| ||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 1163 AAATCTCCAACAAGATGATCGATTCAACTCTAAAGGAGGTCTCCCATCTCGTTTGA 1218
> Ahg939179 jgi|Araly1|939179|scaffold_503370.1
Length=1504
Score = 1092 bits (591), Expect = 0.0
Identities = 916/1066 (86%), Gaps = 49/1066 (5%)
Strand=Plus/Plus
Query 63 TAATAATGTCTCTGATCGGCCGCCTCAA---TCTTGGTCGGCGCTTCTGCACCGCCGTGC 119
|||||||||||| |||| |||||||||| |||||||||||| |||| | ||||| |||
Sbjct 16 TAATAATGTCTCAGATCTGCCGCCTCAATCTTCTTGGTCGGCGTTTCTTCGCCGCCATGC 75
Query 120 CAAGAAGATCGGAA-GACATAATGTCAAACCCAGATTGCCG-CCCTTCTG-ATCTATGCT 176
|||| ||| | ||| || ||||||||||||||||||||||| ||| | | | |||||||
Sbjct 76 CAAGCAGA-CCGAAGGAGATAATGTCAAACCCAGATTGCCGTCCC-GC-GCAGCTATGCT 132
Query 177 TGAGGGTCTCGTACTTGATCAGATGCGTTGGGGATCTCGACACGGCGGCGAAGTACGCTC 236
|||| ||| ||||||||||||||| |||||| ||||||||||||||||||||||||||||
Sbjct 133 TGAGAGTCACGTACTTGATCAGATTCGTTGGTGATCTCGACACGGCGGCGAAGTACGCTC 192
Query 237 GTTTGGCTGTTTTCACCAGCATCAAATCGGAGTCAACAACAACAATATGTCAATCCATCA 296
||||||||||||||| |||||||||||||||| | ||| || ||| ||||||| ||||||
Sbjct 193 GTTTGGCTGTTTTCAGCAGCATCAAATCGGAGGCCACAGCAGCAACATGTCAAGCCATCA 252
Query 297 TCGGAGGCATGTTACGGGATAAAAGGCTCAAGGACGCTTATGATCTCTACGAGTTCTTCT 356
||||||||||||| | | ||||||||| | | |||||||| ||||||||||| |||||||
Sbjct 253 TCGGAGGCATGTTGCAGAATAAAAGGCACGATGACGCTTACGATCTCTACGATTTCTTCT 312
Query 357 TCAATCAGCAT-AACCTCAGACCCAACAGCCATTGCTGGAACTACATCATCGAATCTGGT 415
||||||| | | || ||||||||||||||||||||||| |||||||||||||||||| ||
Sbjct 313 TCAATCA-CTTTAAGCTCAGACCCAACAGCCATTGCTGTAACTACATCATCGAATCTCGT 371
Query 416 TTCCAACAAGGTCTT-GTCAACGATGCTCT-GCATTTCCACCACCGATGCATC-AATTCC 472
||| |||||||| || || |||| ||||| | |||||||||||||| |||| ||| |
Sbjct 372 TTCAAACAAGGT-TTAGTTGACGAAGCTCTCGG-TTTCCACCACCGATCCATCGAAT-CT 428
Query 473 GGTCA-GGTCCACGACTACCCAAGCGACGATTCTTTCAGGATCTTGACTAAAGGGTTAGT 531
||| | ||||||||||||||||||| | ||| |||||||| ||||||||||| |||||||
Sbjct 429 GGT-ATGGTCCACGACTACCCAAGCCAGGATACTTTCAGGGTCTTGACTAAATGGTTAGT 487
Query 532 CCACTCCGGTCGGTTGGACCAAGCCGAAGCCTTTCTTAGAGGCAGGACAGTCAATCGAAC 591
|||| ||||||| |||||||||| |||||||| ||||||| |||||||||| | | ||
Sbjct 488 CCACGCCGGTCGAATGGACCAAGCGGAAGCCTTGCTTAGAGACAGGACAGTCGGTAGGAC 547
Query 592 CACCTACCCAGATCACGTGGCGTACAACAATCTGATTCGCGGGTTTTTGGATCTTGGAAA 651
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 548 CACCTACCCAGATCACGTGGCGTACAAGAATCTGATTCGCGGGTTTTTGGATCTTGGGGA 607
Query 652 TTTTAAA-AAGGCGAATCTAGTCTTGGGCGAATTCAAACGCTTGTTTT-TGATTGCCCTA 709
||| | | |||||| |||||||||||| |||||||||||| ||||||| | |||||||||
Sbjct 608 TTT-AGACAAGGCGGATCTAGTCTTGGCCGAATTCAAACGTTTGTTTTCT-ATTGCCCTA 665
Query 710 TCCGAGACCAAAGATGATTTGCACCATTCAAACTATGAAAACAGAGTCGCATTCCTGATG 769
||||||||||||||||||| || | | ||||||||||||||||||||| ||||||
Sbjct 666 TCCGAGACCAAAGATGATT--CA--A---A--CTATGAAAACAGAGTCGCATTTCTGATG 716
Query 770 GCCACATTCATGGAGTACTGGTTTAAGCAAGGTAAACAGGTGGAAGCTATGGAGTGTTAC 829
||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 717 GCCACGTTCATGGAGTACTGGTTTAAGCAAGGTAAAGAGGTGGAAGCTATGGAGTGTTAC 776
Query 830 AACCGCTGTGTTCTATCAAACAGGTTACTGGTTTGTGCCGAAACGGGTAACGCCCTTTTG 889
|||| |||||| || |||||| ||||| |||||| | ||||| || ||||||||||||
Sbjct 777 AACCTTTGTGTTATAGCAAACAAGTTACCGGTTTGCACAGAAACTGGCAACGCCCTTTTG 836
Query 890 AAAGTCCTGCTCAAATACGGTGaaaaaaaaaaTGCTTGGGCATTGTACCATGAACTCTTA 949
|| |||||||||||||||||||| |||||| |||||||||| ||||||||||||||||||
Sbjct 837 AATGTCCTGCTCAAATACGGTGAGAAAAAACATGCTTGGGCTTTGTACCATGAACTCTTA 896
Query 950 GATAAAAATGGAACCGGTAAGGGTTGCTTGGACTCTGATACCATTAAGATAATGGTGGAC 1009
|||||| || | | || | | || |||||||||||||||||||| | |||
Sbjct 897 GATAAA---GGTA--G--AA------CA-G-ACCCTGATACCATTAAGATAATGATAGAC 941
Query 1010 GAGTGCTTTGATATGGGTTGGTTTAGTGAGGCTATGG-AGACCTACAAAAAGGCGAGACC 1068
||||| |||||||||||| | ||||| |||||| ||| ||||||||| ||||| || |
Sbjct 942 GAGTGTTTTGATATGGGTCGATTTAGCGAGGCT-TGGGAGACCTACACCAAGGCTAGTGC 1000
Query 1069 CAAGAACGACTACCTCAGTGACAAATACATTATTACAAGGTTTTGC 1114
||||||| ||| ||||||||||| ||||| |||||||| || ||||
Sbjct 1001 CAAGAACCACTTCCTCAGTGACAGATACAATATTACAAAGTGTTGC 1046
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53745335695
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5