BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G61035.1 Length=1023 Score E Sequences producing significant alignments: (Bits) Value Ahg899060 jgi|Araly1|899060|Al_scaffold_0005_3026 887 0.0 > Ahg899060 jgi|Araly1|899060|Al_scaffold_0005_3026 Length=1557 Score = 887 bits (480), Expect = 0.0 Identities = 674/759 (89%), Gaps = 48/759 (6%) Strand=Plus/Plus Query 297 AGACGGTTCGAGCCTTCGGCCACCACGAAGTCTCCGTAGCATGGCTACCTTCGACGTCGT 356 |||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||| Sbjct 335 AGACGGTTCGAGCCTTCGGCCACCACGACGTCTCCATAGCATGGCTACCTTCGACGTCGT 394 Query 357 CTCGTTGGAGGTTAT---GG-A--TACTGGCGACAAAACTTTTCTCACGGGAGCATCACA 410 ||||||||||||||| || | |||||||||||||||||||||||||||||| ||||| Sbjct 395 CTCGTTGGAGGTTATGGAGGAAGGTACTGGCGACAAAACTTTTCTCACGGGAGCGTCACA 454 Query 411 AAGCCACGAAGTCCGTAAGGTCGAAGAAAGCGAAAGAACTTGTAACATTTCATTATCCAA 470 ||||||||||||||||| ||||||||||||||||||||||| ||||| ||||||||| || Sbjct 455 AAGCCACGAAGTCCGTACGGTCGAAGAAAGCGAAAGAACTTATAACA-TTCATTATCGAA 513 Query 471 AGAGGCGAACGAGGCTTCTCCGTCGACATTGCTCGTACGTGCGTGCTTCATCACGTCGCT 530 ||||||||||||||||||||||||||||||| | | ||||| ||||||||||||||||| Sbjct 514 AGAGGCGAACGAGGCTTCTCCGTCGACATTG--C-T-CGTGCTTGCTTCATCACGTCGCT 569 Query 531 TAATGTAGA-CTCAAACGTTGTGTTTTCGATCGACTTAGGTAGTTACGATCCGAGAGCCT 589 ||||||| | ||||||||||||||||||||||||||||||| ||||||| |||||||||| Sbjct 570 TAATGTA-ATCTCAAACGTTGTGTTTTCGATCGACTTAGGTGGTTACGACCCGAGAGCCT 628 Query 590 CCACGGAGCTCCAAGACTCCTTGTCTCGTATGATGAAAACAATGGGGAAACCGAACCTCG 649 ||||||||||||| ||||| ||||||||||||||||||| |||||||||||| ||||||| Sbjct 629 CCACGGAGCTCCAGGACTCATTGTCTCGTATGATGAAAATAATGGGGAAACCAAACCTCG 688 Query 650 CAAATTATTTTCCGTCTCTTGAGTTTCTTGATC-TACAGGGTATCCGGAAAGAGATGAAG 708 ||| |||||||||||||||||||||||||| | |||| ||||||||||||||||||||| Sbjct 689 TAAACTATTTTCCGTCTCTTGAGTTTCTTGA-CATACAAGGTATCCGGAAAGAGATGAAG 747 Query 709 GTCATGTGTTCGGAGAGGTTGTTTCAGGTTTTTCAAGGCCTCATCGATGCTCGGATCGCG 768 | ||||||||||||||||||||||| |||||||||| ||| || ||||||| |||||| Sbjct 748 G---TGTGTTCGGAGAGGTTGTTTCAGATTTTTCAAGGGCTCGTCAATGCTCGAATCGCG 804 Query 769 GAAAGATCATCGCAGATTGGACCTAGAGTCGATGCACTGAGAGGCGATTTGTTGGATTCA 828 ||||||||||| |||| |||||||||| |||||| ||||||| ||||||||||||||| Sbjct 805 GAAAGATCATCACAGACTGGACCTAGA---GATGCATTGAGAGGTGATTTGTTGGATTCA 861 Query 829 GTGATCGATCTTATTCAAGAAGAGGGATCGGAAGTCGACATGAATGATATCAA--AC--- 883 | |||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 862 CTAATCGATCTTATTCAAGAAGAGGGATCGGAAGTCGACATGAATGATATCAACCACTTT 921 Query 884 --A--C---TT-TTTAT-GC---A-CG-AA-C----TCTACCATTGTGGAATGGACATTG 924 | | || ||||| || | || || | ||||||| ||||||||| ||||| Sbjct 922 TTATGCGACTTGTTTATTGCTGGAACGGAAACGAACTCTACCACAGTGGAATGGGCATTG 981 Query 925 GCTGAGCTACTTCATAACCCAATAG-CTATGGCTAACACTAAAGTTGAGACCAACTTTAT 983 ||||||||||||| ||||||| || ||||||||||| ||||||| |||| ||||||||| Sbjct 982 GCTGAGCTACTTCGTAACCCAG-AGGCTATGGCTAACGCTAAAGTCGAGATCAACTTTAT 1040 Query 984 TGTTGGCC-AAATCGTTACGTTTGTGACTCCAATCTCTT 1021 |||||||| ||| ||||||||| |||||||||||||||| Sbjct 1041 TGTTGGCCCAAACCGTTACGTTCGTGACTCCAATCTCTT 1079 Score = 455 bits (246), Expect = 3e-127 Identities = 275/289 (95%), Gaps = 2/289 (1%) Strand=Plus/Plus Query 7 ATGAAGCACACAATAGCTCTAGCTCTGCTTTTGATACTTAGCTTCCTTTTCACGTATCTT 66 ||||||||||| ||||||||||||||||||||||||||| ||||| |||| || |||||| Sbjct 1 ATGAAGCACACCATAGCTCTAGCTCTGCTTTTGATACTTGGCTTCTTTTTAACATATCTT 60 Query 67 ATTCTTGTCGCTGTTAAATCACGACGACGGAGATCAAGCTC-ACTGGCACTGGTTCCGGG 125 | |||||||||||||||||||||||||||||||||||| | |||||||||| ||||||| Sbjct 61 CTCCTTGTCGCTGTTAAATCACGACGACGGAGATCAAGC-CAACTGGCACTGCTTCCGGG 119 Query 126 ACCTCCCGGACCTTCGGGATGGCCCATAATCGGAAACCTTCTCCAGATCATCGGAAAAGC 185 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 120 ACCTCCGGGACCTTCGGGATGGCCCATAATCGGAAACCTTCTCCAGATCATCGGAAAAGC 179 Query 186 TCCTCACCGTTCATTTGCTGATCTCTCGAGAGTTTATGGACCAGTCATGAGTCTTAGGCT 245 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 180 TCCTCACCGTTCACTTGCTGATCTCTCGAGAGTTTATGGACCAGTCATGAGTCTTAGGCT 239 Query 246 TGGAAGTTTAACCAAAGTGGTCATTTCTTCACCAGATGCAGCAAGAGAG 294 |||||||||| ||| |||||||||||||||||||||||||||||||||| Sbjct 240 TGGAAGTTTAGCCACAGTGGTCATTTCTTCACCAGATGCAGCAAGAGAG 288 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 38046671166 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5