BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G61035.1
Length=1023
Score E
Sequences producing significant alignments: (Bits) Value
Ahg899060 jgi|Araly1|899060|Al_scaffold_0005_3026 887 0.0
> Ahg899060 jgi|Araly1|899060|Al_scaffold_0005_3026
Length=1557
Score = 887 bits (480), Expect = 0.0
Identities = 674/759 (89%), Gaps = 48/759 (6%)
Strand=Plus/Plus
Query 297 AGACGGTTCGAGCCTTCGGCCACCACGAAGTCTCCGTAGCATGGCTACCTTCGACGTCGT 356
|||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||
Sbjct 335 AGACGGTTCGAGCCTTCGGCCACCACGACGTCTCCATAGCATGGCTACCTTCGACGTCGT 394
Query 357 CTCGTTGGAGGTTAT---GG-A--TACTGGCGACAAAACTTTTCTCACGGGAGCATCACA 410
||||||||||||||| || | |||||||||||||||||||||||||||||| |||||
Sbjct 395 CTCGTTGGAGGTTATGGAGGAAGGTACTGGCGACAAAACTTTTCTCACGGGAGCGTCACA 454
Query 411 AAGCCACGAAGTCCGTAAGGTCGAAGAAAGCGAAAGAACTTGTAACATTTCATTATCCAA 470
||||||||||||||||| ||||||||||||||||||||||| ||||| ||||||||| ||
Sbjct 455 AAGCCACGAAGTCCGTACGGTCGAAGAAAGCGAAAGAACTTATAACA-TTCATTATCGAA 513
Query 471 AGAGGCGAACGAGGCTTCTCCGTCGACATTGCTCGTACGTGCGTGCTTCATCACGTCGCT 530
||||||||||||||||||||||||||||||| | | ||||| |||||||||||||||||
Sbjct 514 AGAGGCGAACGAGGCTTCTCCGTCGACATTG--C-T-CGTGCTTGCTTCATCACGTCGCT 569
Query 531 TAATGTAGA-CTCAAACGTTGTGTTTTCGATCGACTTAGGTAGTTACGATCCGAGAGCCT 589
||||||| | ||||||||||||||||||||||||||||||| ||||||| ||||||||||
Sbjct 570 TAATGTA-ATCTCAAACGTTGTGTTTTCGATCGACTTAGGTGGTTACGACCCGAGAGCCT 628
Query 590 CCACGGAGCTCCAAGACTCCTTGTCTCGTATGATGAAAACAATGGGGAAACCGAACCTCG 649
||||||||||||| ||||| ||||||||||||||||||| |||||||||||| |||||||
Sbjct 629 CCACGGAGCTCCAGGACTCATTGTCTCGTATGATGAAAATAATGGGGAAACCAAACCTCG 688
Query 650 CAAATTATTTTCCGTCTCTTGAGTTTCTTGATC-TACAGGGTATCCGGAAAGAGATGAAG 708
||| |||||||||||||||||||||||||| | |||| |||||||||||||||||||||
Sbjct 689 TAAACTATTTTCCGTCTCTTGAGTTTCTTGA-CATACAAGGTATCCGGAAAGAGATGAAG 747
Query 709 GTCATGTGTTCGGAGAGGTTGTTTCAGGTTTTTCAAGGCCTCATCGATGCTCGGATCGCG 768
| ||||||||||||||||||||||| |||||||||| ||| || ||||||| ||||||
Sbjct 748 G---TGTGTTCGGAGAGGTTGTTTCAGATTTTTCAAGGGCTCGTCAATGCTCGAATCGCG 804
Query 769 GAAAGATCATCGCAGATTGGACCTAGAGTCGATGCACTGAGAGGCGATTTGTTGGATTCA 828
||||||||||| |||| |||||||||| |||||| ||||||| |||||||||||||||
Sbjct 805 GAAAGATCATCACAGACTGGACCTAGA---GATGCATTGAGAGGTGATTTGTTGGATTCA 861
Query 829 GTGATCGATCTTATTCAAGAAGAGGGATCGGAAGTCGACATGAATGATATCAA--AC--- 883
| |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 862 CTAATCGATCTTATTCAAGAAGAGGGATCGGAAGTCGACATGAATGATATCAACCACTTT 921
Query 884 --A--C---TT-TTTAT-GC---A-CG-AA-C----TCTACCATTGTGGAATGGACATTG 924
| | || ||||| || | || || | ||||||| ||||||||| |||||
Sbjct 922 TTATGCGACTTGTTTATTGCTGGAACGGAAACGAACTCTACCACAGTGGAATGGGCATTG 981
Query 925 GCTGAGCTACTTCATAACCCAATAG-CTATGGCTAACACTAAAGTTGAGACCAACTTTAT 983
||||||||||||| ||||||| || ||||||||||| ||||||| |||| |||||||||
Sbjct 982 GCTGAGCTACTTCGTAACCCAG-AGGCTATGGCTAACGCTAAAGTCGAGATCAACTTTAT 1040
Query 984 TGTTGGCC-AAATCGTTACGTTTGTGACTCCAATCTCTT 1021
|||||||| ||| ||||||||| ||||||||||||||||
Sbjct 1041 TGTTGGCCCAAACCGTTACGTTCGTGACTCCAATCTCTT 1079
Score = 455 bits (246), Expect = 3e-127
Identities = 275/289 (95%), Gaps = 2/289 (1%)
Strand=Plus/Plus
Query 7 ATGAAGCACACAATAGCTCTAGCTCTGCTTTTGATACTTAGCTTCCTTTTCACGTATCTT 66
||||||||||| ||||||||||||||||||||||||||| ||||| |||| || ||||||
Sbjct 1 ATGAAGCACACCATAGCTCTAGCTCTGCTTTTGATACTTGGCTTCTTTTTAACATATCTT 60
Query 67 ATTCTTGTCGCTGTTAAATCACGACGACGGAGATCAAGCTC-ACTGGCACTGGTTCCGGG 125
| |||||||||||||||||||||||||||||||||||| | |||||||||| |||||||
Sbjct 61 CTCCTTGTCGCTGTTAAATCACGACGACGGAGATCAAGC-CAACTGGCACTGCTTCCGGG 119
Query 126 ACCTCCCGGACCTTCGGGATGGCCCATAATCGGAAACCTTCTCCAGATCATCGGAAAAGC 185
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 ACCTCCGGGACCTTCGGGATGGCCCATAATCGGAAACCTTCTCCAGATCATCGGAAAAGC 179
Query 186 TCCTCACCGTTCATTTGCTGATCTCTCGAGAGTTTATGGACCAGTCATGAGTCTTAGGCT 245
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 TCCTCACCGTTCACTTGCTGATCTCTCGAGAGTTTATGGACCAGTCATGAGTCTTAGGCT 239
Query 246 TGGAAGTTTAACCAAAGTGGTCATTTCTTCACCAGATGCAGCAAGAGAG 294
|||||||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct 240 TGGAAGTTTAGCCACAGTGGTCATTTCTTCACCAGATGCAGCAAGAGAG 288
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38046671166
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5