BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G61040.1
Length=1598
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486570 jgi|Araly1|486570|fgenesh2_kg.5__2562__AT3G61040.1 1487 0.0
> Ahg486570 jgi|Araly1|486570|fgenesh2_kg.5__2562__AT3G61040.1
Length=1469
Score = 1487 bits (805), Expect = 0.0
Identities = 931/990 (94%), Gaps = 15/990 (2%)
Strand=Plus/Plus
Query 524 CATCATTCATCACATCACT--C--AATATAATCTCGAACGCTCTGTTTTCCACAAACCTC 579
||||||||||||||||||| | |||||||||||||||||||||||||||| |||||||
Sbjct 481 CATCATTCATCACATCACTCACTTAATATAATCTCGAACGCTCTGTTTTCCAAAAACCTC 540
Query 580 GCAAACTTTGATGACTCAAAGACATTTCACGATTTCCAAAACGTGGTGATTCGGATGATG 639
||||||||||||||| |||||||| |||||||||||| ||||||||| |||||||||||
Sbjct 541 TCAAACTTTGATGACTTAAAGACATCTCACGATTTCCATAACGTGGTGGTTCGGATGATG 600
Query 640 GAGATCTCCGGAAAACCCAACCTCGCTGATTTCTTCCCTTTTCTTGGGTTTCTTGATCTG 699
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 GAGATCTCCGGAAAACCCAACCTCGCTGATTTCTTCCCTTTTCTTGGGTTTCTTGATCTG 660
Query 700 CAAGGAGCTAGAAAAGAAGCGAGGCTATTGATGCACAAACTGTTTAGGGTTTTTCAAGGA 759
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 661 CAAGGAGCTAGAAAAGAAGCGAGGCTATTGATGCACAAACTGTTTAGGGTTTTTCAAGAA 720
Query 760 TTCATCGATACAAAGAGATCATCAA---CTTCGAGAAATAACAACGATATGTTAGATTCT 816
|||||||||||||||||||||||| |||||||||| |||||||||||||||||||||
Sbjct 721 CTCATCGATACAAAGAGATCATCAAATGCTTCGAGAAACAACAACGATATGTTAGATTCT 780
Query 817 CTTTTGGATATTGCTCATAAGAAGGAGTCAGAACTCGATGACAATAATATCAAACATCTG 876
|||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 781 CTTTTGGATATTGCTCATGAGGAGGAGTCAGAACTCGATGACAATAATATCAAACATCTG 840
Query 877 CTTCTCGACTTGTTTCTGGCGGGAGTAGACACGAGTTCGAGTGCGGTGGAATGGGCTATG 936
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 841 CTTCTCGACTTGTTTCTGGCGGGAGTAGACACGAGTTCGAGTGCAGTGGAATGGGCTATG 900
Query 937 GCGGAGTTACTTCGAAACCCTAAGATGATAGTGAAAGTTCAAGAAGAGATAAGACAAGTG 996
|||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 GCGGAGTTGCTTCAAAACCCTAAGATGATAGTGAAAGTTCAAGAAGAGATAAGACAAGTG 960
Query 997 ATAGGGCTAAAGGGCACCGTTCAAGATCTTGATATCGTTAAACTACCTTATTTACAAGCA 1056
||||||||||| |||| |||||||||||| |||||||||||| |||||||||||||||||
Sbjct 961 ATAGGGCTAAACGGCATCGTTCAAGATCTGGATATCGTTAAATTACCTTATTTACAAGCA 1020
Query 1057 GTTGTGAAAGAGAGTCTTCGTTTGCATCCGCCTGCTCCTTTCCTCGTCCCTCGAAAATCA 1116
|||||||| |||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 1021 GTTGTGAACGAGAGTCTTCGTTTGCATCCGCCTGCTCCTTTTCTAATCCCTCGAAAATCC 1080
Query 1117 GAGT-CTGATGATGTCCAAATTTTCGAGTTCCTCATTCCTAAGAATACTCAGGTTCTTGT 1175
|| | |||||||||||| |||||| |||||||||||||||||||||||||||||||||||
Sbjct 1081 GA-TACTGATGATGTCCGAATTTTTGAGTTCCTCATTCCTAAGAATACTCAGGTTCTTGT 1139
Query 1176 GAACGTGTGGGCAATAGGGCGAGATCCGAATGTGTGGAAGAATCCGACGCAGTTCGAGCC 1235
|||||||||||||||||| |||||||| || |||||| | ||||||| ||||||||||||
Sbjct 1140 GAACGTGTGGGCAATAGGACGAGATCCAAACGTGTGGGATAATCCGAAGCAGTTCGAGCC 1199
Query 1236 AGAGAGGTTTTTGGGAAGAGGAATAGATGTGAAAGGTAATCATTTTGAGCTGATTCCGTT 1295
|||||||||||||||||||||||| ||||||| ||||||| |||||||| ||||||||||
Sbjct 1200 AGAGAGGTTTTTGGGAAGAGGAATCGATGTGAGAGGTAATAATTTTGAGTTGATTCCGTT 1259
Query 1296 CGGAGCTGGACGACGGATTTGTCCAGGAATGCCACTCGCGTTTAGGATAATGCATCTAGT 1355
|||||||||||| |||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 1260 TGGAGCTGGACGAAGGATCTGTCCAGGAATGCCACTAGCGTTTAGGATAATGCATCTAGT 1319
Query 1356 TCTTGCGTCTCTTCTCTATGGCTTTGACTGGGAGTATCAAAACGGCGTAGTTCCTGAAAA 1415
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1320 TCTTGCGTCTCTTCTCTATGGCTTTGACTGGGAGTATCAAAACGGCGTAGTTCCTGAAGA 1379
Query 1416 TGTGGATATGAATGAGGCCTT---TG--G-TGCTACCTTGCACAAAGCCGAACCATTATG 1469
|||||||||||| |||||||| || | ||||||||||||||||||| ||||||||||
Sbjct 1380 TGTGGATATGAACGAGGCCTTCGGTGTCGGTGCTACCTTGCACAAAGCCAAACCATTATG 1439
Query 1470 TATCGTGCCTATCAAGAAACGTGTTTGACA 1499
| |||||||||||||||||| |||||||||
Sbjct 1440 TGTCGTGCCTATCAAGAAACATGTTTGACA 1469
Score = 706 bits (382), Expect = 0.0
Identities = 451/483 (93%), Gaps = 9/483 (2%)
Strand=Plus/Plus
Query 1 ATGGATATTGTAGCAATAGTATTGtctctgct-ctttatcttctttctcttcttc--ttt 57
|||||||| |||||||||||||||| |||||| || | | |||||| |||||||| |||
Sbjct 1 ATGGATATCGTAGCAATAGTATTGTTTCTGCTCCTCTGT-TTCTTTATCTTCTTCTTTTT 59
Query 58 -ttctACACCACCGGAAAATCA-TGTCCCGGTGGAGCCAAGAACCCACCGGGTCCTTCAA 115
||||||||||||||||||| | ||| |||||||||||||||| |||||||||||||||
Sbjct 60 CTTCTACACCACCGGAAAAT-ACTGTTCCGGTGGAGCCAAGAATCCACCGGGTCCTTCAG 118
Query 116 AGCTATCTCTGCTTCGTAACATCCTTCAAACTGTTGAAAAACCTCACCGTTCACTTGCCG 175
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 119 GGCTATCTCTGCTTCGTAACATCCTTCAAACTGTTGAAAAACCTCACCGTTCACTTGTCG 178
Query 176 ATCTCTCAAGAATTTACGGAAGCGTTATGAGTTTTAAGCTTGGCTGTTTGACCACAGTGG 235
|||| ||||| |||||||||||||| |||||| |||||||||| ||||||||||| ||||
Sbjct 179 ATCTATCAAGGATTTACGGAAGCGTAATGAGTCTTAAGCTTGGTTGTTTGACCACGGTGG 238
Query 236 TCATATCTTCACCGGAAACAGCAAAAGAAGTGCTGAAAACACATGATCATGTCTTGTCTT 295
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 239 TCATATCTTCACCGGAAGCAGCAAAAGAAGTGCTGAAAACACATGATCATGTCTTGTCTT 298
Query 296 ATCGAGTCTCCAGTGACCCGGTTCGAGCCGCTGGTCATCACGAGCTTTCCTTGCTCTGGA 355
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 299 ACCGAGTCTCCAGTGACCCGGTTCGAGCCGCTGGTCATCACGAGCTTTCCTTGCTCTGGC 358
Query 356 TTCCTCCGTTGGCTCGTTGGAGGTTTCTACGAAAGATAACGAGGAACCAATTATTCTCAA 415
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 359 TTCCTCCGTTGGCTCGTTGGCGGTTTCTACGAAAGATAACGAGGAACCAATTATTCTCAA 418
Query 416 CGCAACGTCTAGAAGCAACCAGTG-CTATAAGGACGAGGAAGGTGCAAGAACTCATGAAC 474
|||||||| ||||||||||||||| | |||||||||||||||||||||||||| |||| |
Sbjct 419 CGCAACGTTTAGAAGCAACCAGTGGC-ATAAGGACGAGGAAGGTGCAAGAACTAATGAGC 477
Query 475 TTC 477
|||
Sbjct 478 TTC 480
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59877865140
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5