BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G61060.2
Length=1374
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486574 jgi|Araly1|486574|fgenesh2_kg.5__2566__AT3G61060.2 1871 0.0
> Ahg486574 jgi|Araly1|486574|fgenesh2_kg.5__2566__AT3G61060.2
Length=1339
Score = 1871 bits (1013), Expect = 0.0
Identities = 1226/1321 (93%), Gaps = 46/1321 (3%)
Strand=Plus/Plus
Query 1 CAGGATTATATAATTGTTAGGCTCAGGAGAATTGACCTTTTGAATATTTCATACGG-TTA 59
||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||
Sbjct 1 CAGGATTATATAATTGTTAGGCTCAGGAGAATTGACC-TTTGAATATTTCATACGGTTTA 59
Query 60 AAAAATTCTTCTATAT--A-TAAAGTTGCTTTGAATATTTTGTAGTCTC--TGTATGTTC 114
|||||||||||||||| | | ||| ||||||||||| |||||| |||| |||||||||
Sbjct 60 AAAAATTCTTCTATATAAACTGAAGATGCTTTGAATA-TTTGTATTCTCTGTGTATGTTC 118
Query 115 AAAACCGTTTAACAATAACAACAACAAAAAGCTTCCttt-tttg-ttttttgagttttCG 172
||||||| | || |||||||||||||| |||| |||||||||||||||
Sbjct 119 AAAACCG--T----AT---------AAAAAGCTTCCTTTATTTGTTTTTTTGAGTTTTCG 163
Query 173 TCGATCGATTGGTTTAAATCCTGTCGTATCAATTTGTTCTCGATTCTCCGCGACCATGCA 232
| |||||||||| || ||| ||||| ||||||||||||||||||||| |||| |||||||
Sbjct 164 TTGATCGATTGG-TT-AATTCTGTCATATCAATTTGTTCTCGATTCTTCGCGGCCATGCA 221
Query 233 AATTT-A-G-GGTC-TTCG-TTTT-GT--T--TGATGGGCGCGAATATCTCGGGAGGTTC 282
||||| | | || || | |||| || | | |||||||||||||||||||||||||
Sbjct 222 AATTTAATGTTTTCGTTTGTTTTTGGTAGTGATTATGGGCGCGAATATCTCGGGAGGTTT 281
Query 283 ACCGGAGTTTGACCGGAACGATGACGTTTACTCGAGGAAACTCAGATTGGTGGATTTACC 342
||||||||||||||| ||| |||||||||||||| ||||| ||||||||||||||||||
Sbjct 282 GCCGGAGTTTGACCGGGACGGTGACGTTTACTCGACGAAACCCAGATTGGTGGATTTACC 341
Query 343 TGAGAATTGTGTAGCGTTGATTATGACACGGCTTGATCCACCTGAGATTTGCCGGCTTGC 402
||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 342 GGAGAATTGTGTAGCGTTGATTATGACACGGCTTGATCCACCGGAGATTTGTAGGCTTGC 401
Query 403 TCGTCTCAACAGGATGTTCCGTCGCGCTTCCTCAGCTGATTTCATTTGGGAATCAAAGTT 462
|||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 402 TCGTCTCAACAGGATGTTCCGTCGCGCTTCGTCAGCTGATTTCATATGGGAATCAAAGTT 461
Query 463 GCCTGCGAATTATCGTGTTATTGCACACAAGGTGTTCGATGAAATTACTCTGACGAAATT 522
|||| ||||||||||||||||||||||||||||||| |||||||||||||||| ||||||
Sbjct 462 GCCTTCGAATTATCGTGTTATTGCACACAAGGTGTTTGATGAAATTACTCTGAGGAAATT 521
Query 523 AATAAAGAAAGATCTTTATGCAAAGCTTAGCCAGCCTAATCTCTTCGACGATGGCACAAA 582
||||||||||||||||||||| |||||||||| |||||||||||||||||||||||| ||
Sbjct 522 AATAAAGAAAGATCTTTATGCGAAGCTTAGCCGGCCTAATCTCTTCGACGATGGCAC-AA 580
Query 583 GCAGGAATTGTGGATAGATAAGAACACGGGTCGTCTTTGTTTATCTATTTCTTCAAAGGC 642
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 581 --AGGAATTGTGGATAGATAAGAACACGGGTCGTCTTTGTTTATCTATTTCTTCAAAGGC 638
Query 643 ACTAAGGATTACTGGAATTGATGATCGGAGATACTGGAGTCATATCCCAACTGATGAATC 702
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 639 ACTAAGGATTACTGGAATTGATGATCGGAGATACTGGAGTCATATCCCAACCGATGAATC 698
Query 703 CAGGTTCCAGTCAGCTGCTTATGTTCAACAGATATGGTGGTTTGAAGTAGGAGGAGAGTT 762
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 699 CAGGTTCCAGTCAGTTGCTTATGTTCAACAGATATGGTGGTTTGAAGTAGGAGGAGAGTT 758
Query 763 TGAGATCCAGTTTCCATCTGGAACATATAGTCTCTTCTTCCGTATCCAGCTCGGTAAAAC 822
||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||
Sbjct 759 TGAGATCCAGTTTCCATCTGGAATATACAGTCTCTTCTTCCGTATCCAGCTCGGTAAAAC 818
Query 823 ATCAAAGAGGCTTGGAAGGAGGATCTGCAACTCTGAACACATTCATGGATGGGACATAAA 882
||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 819 ATCGAAGAGGCTTGGAAGGAGGATCTGCAACTCTGAACATATTCATGGATGGGACATAAA 878
Query 883 ACCTGTAAGGTTCCAGCTCGCCACTTCGGACAACCAACAAGCTGTATCATTGTGTTATCT 942
|||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 879 ACCTGTGAGGTTCCAGCTCGCCACTTCGGACAACCAACAAGCTGTTTCATTGTGTTATCT 938
Query 943 GAACAACAACCCTGGGAGCTGGAGTCACTATCACGTTGGAGATTTCAAAGTGACAAATCC 1002
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 939 GAACAAGAACCCTGGGAGCTGGAGTCACTATCACGTTGGAGATTTCAAAGTGACAAATCC 998
Query 1003 AGATGTATCAACAGGAATCAAATTCTCCATGACTCAAATCGATTGCACTCACACGAAAGG 1062
|||| |||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 999 AGATACATCAACCGGAATCAAATTCTCGATGACTCAAATCGATTGCACTCACACGAAAGG 1058
Query 1063 TGGGCTATGCATAGACTCTGTTCTTATATTACCTAAAGAATGTGCAAAAGAAGTCATTGG 1122
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1059 TGGGCTATGCATAGACTCTGTTCTTATATTACCTAAAGACTGTGCAAAAGAAGTCATTGG 1118
Query 1123 ATCACAATAGTTTTGTAGATATAGAGTGAGA--TTGTTTGTAAAGGGTGAGAGA-T-TAT 1178
||||| ||||||||||||||||||||||||| ||||| ||||||||||||||| | | |
Sbjct 1119 ATCACTATAGTTTTGTAGATATAGAGTGAGAGATTGTT-GTAAAGGGTGAGAGAATGTTT 1177
Query 1179 TTTTCAGTGAAACATTCACTATACTGtttttttttCTTGATCTGGGCTGCATTCTCAAGA 1238
||||||||||||||||||||||||| | ||||||||||||||||| |||||||||||||
Sbjct 1178 TTTTCAGTGAAACATTCACTATACTCTGCTTTTTTCTTGATCTGGGATGCATTCTCAAGA 1237
Query 1239 TGAATCTCAGATCTGGAACT-GTGTACACATGGTTGGGTTGTCTCTAGTTTTGTCTGTAG 1297
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1238 TGAATCTCAGATCTGGAACTTGTGTACACATGGTTGGGTTGTCTCTAGTTTTGTCTGTAG 1297
Query 1298 T 1298
|
Sbjct 1298 T 1298
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51427815033
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5