BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G61070.1
Length=1210
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486577 jgi|Araly1|486577|fgenesh2_kg.5__2569__AT3G61070.2 1563 0.0
> Ahg486577 jgi|Araly1|486577|fgenesh2_kg.5__2569__AT3G61070.2
Length=1061
Score = 1563 bits (846), Expect = 0.0
Identities = 953/1004 (95%), Gaps = 10/1004 (1%)
Strand=Plus/Plus
Query 187 TCTCAATTGTATAATCATCTCCTGGGTCGTCGTTATC-GTGATCATCTAGAAGAAAGCAT 245
||||||||| | ||||||||||||||||||| || | | ||||||||||||||||||||
Sbjct 63 TCTCAATTG--T-ATCATCTCCTGGGTCGTCG-TAACAGAGATCATCTAGAAGAAAGCAT 118
Query 246 GACTACACTAGATTTGACCAGAGCCGAGCTTGCTCTTATTGTTCTCTATTTGAACAAAGC 305
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 119 GACTACACTAGATTTGTCCAGAGCCGAGCTTGCTCTTATTGTTCTCTATTTGAACAAAGC 178
Query 306 TGAGGCTAGAGATAAGATATGCAGAGCTATCCAATATGGTTCCAAATTTTTGAGCGGTGG 365
||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 179 TGAGGCTAGAGATAAGATATGCAGAGCTATCCAGTATGGTTCCAAATTCTTGAGCGGTGG 238
Query 366 CCAACCTGGTACTGCTCAAACTGTCGACAAAAACACCAGCTTGGCGAGAAAAGTTTTCCG 425
|| |||||||||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 239 GCAGCCTGGTACTGCTCAAACTGTTGACAAAAACACCAGCTTGGCTCGAAAAGTTTTCCG 298
Query 426 TCTTTTCAAGTTTGTCAATGATTTTCACGGTCTTATCAGCCCCGTGCCTAAAGGGACTCC 485
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 299 TCTTTTCAAGTTTGTCAATGATTTTCACGGTCTTATCAGCCCCGTGCCTAAAGGAACACC 358
Query 486 ACTTCCTCTTGTCTTACTCGGGAAGTCGAAGAATGCGCTCTTGTCTACCTTTTTGTTTCT 545
||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 359 GCTTCCTCTTGTCTTACTCGGGAAGTCGAAGAATGCTCTCTTGTCTACCTTCTTGTTTCT 418
Query 546 TGATCAAATCGTCTGGCTTGGTAGATCCGGCATATACAAGAACAAAGAACGAACTGAATT 605
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 419 TGATCAAATCGTCTGGCTTGGTAGATCCGGCATATATAAGAACAAAGAACGAACTGAATT 478
Query 606 GCTTGGACGTATATCACTTTTCTGCTGGCTGGGATCATCCGTTTGTACAAGTGCAGTCGA 665
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 GCTTGGACGTATATCACTTTTCTGCTGGCTGGGATCATCCGTTTGTACAAGTGCAGTCGA 538
Query 666 GATTGGTGAGCTTGGAAGGCTCTCTTCATCTATGAAGAAGATGGAAAAGGAACTCAAAGC 725
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 539 GATTGGTGAGCTTGGAAGGCTCTCTTCATCTATGAAGAAGATGGAAAAGGAACTCAAAGA 598
Query 726 TGATGATGAGCTGTATCGTGCTAAGCTTCAGAAATCAAACGACAGAACTCTAGCTTTGAT 785
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 TGACGATGAGCTGTATCGTGCTAAGCTTCAGAAATCAAACGACAGAACTCTAGCTTTGAT 658
Query 786 TAAATCAAGCATGGACATTATTGTAGCCATTGGTCTCCTTCAGTTAGCTCCAAAGACGAT 845
||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||| |
Sbjct 659 TAAATCAAGCATGGACATTGTTGTAGCCATTGGTCTCCTTCAATTAGCTCCAAAGACGGT 718
Query 846 TAGTCCTCGTGTCACTGGTGCTTTCGGGTTTACCACCTCACTTATCTCTTGTTATCAGTT 905
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 719 TAGTCCTCGTGTCACTGGCGCTTTCGGGTTTACCACCTCACTTATCTCTTGTTATCAGTT 778
Query 906 GCTTCCATCGCGCCCCAAGTTGAAGACACCTTGAAGAAGGAATAAGCTTGTTCTCTAGAC 965
|||||| |||||||||||||||||||||||||||||| |||| || ||||||||||||||
Sbjct 779 GCTTCCGTCGCGCCCCAAGTTGAAGACACCTTGAAGACGGAAGAAACTTGTTCTCTAGAC 838
Query 966 TTTCAGAATAATTGTTTCATATTCATCAGTAAACCTATTGTGTTCAGGTATTCTAAGGAG 1025
|||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||
Sbjct 839 TTTCAGAATAATTGTTTCATATTCATTAGTAAACCTGTTGTGTTCAGGTATTCTAAGGAG 898
Query 1026 TCTATGTTCCTCCTTTGAATGAATTTGCTGCTCTTATAACGCGTTTGCAAGAATAATGAT 1085
|||||||| ||||||||||||||||||||||||||||| | | |||||||||||| ||||
Sbjct 899 TCTATGTTGCTCCTTTGAATGAATTTGCTGCTCTTATA-CTCCTTTGCAAGAATATTGAT 957
Query 1086 AAGTTTTAGAATAAGATT---A-TTATGATACATCTTCAAGATTTTTTGATTAGAAATTT 1141
|| ||||| ||||||||| | |||| ||||||| ||||||||| ||||||||||||||
Sbjct 958 AATTTTTATAATAAGATTTTTAATTATTATACATCCTCAAGATTTCTTGATTAGAAATTT 1017
Query 1142 GTGTTTGTTTCTCATTTTGAACAAGACTCTGTTCCTACATAGTA 1185
||||||||||||||||||| |||| ||||||| ||||||||||
Sbjct 1018 GTGTTTGTTTCTCATTTTGGTCAAGTCTCTGTTTCTACATAGTA 1061
Score = 87.9 bits (47), Expect = 2e-16
Identities = 51/53 (96%), Gaps = 0/53 (0%)
Strand=Plus/Plus
Query 4 ATAGTTTCTATCTCCGATGACACAAAACGAGGAAGATTATTTGACATTTTAAG 56
||||||||||||||||||||||||||||||||||||| |||||||||| ||||
Sbjct 1 ATAGTTTCTATCTCCGATGACACAAAACGAGGAAGATAATTTGACATTATAAG 53
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45175656645
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5