BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G61080.1
Length=1219
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486578 jgi|Araly1|486578|fgenesh2_kg.5__2570__AT3G61080.1 1842 0.0
> Ahg486578 jgi|Araly1|486578|fgenesh2_kg.5__2570__AT3G61080.1
Length=1194
Score = 1842 bits (997), Expect = 0.0
Identities = 1139/1205 (95%), Gaps = 20/1205 (2%)
Strand=Plus/Plus
Query 10 GGAGAAGAAGAAAATGGCGGTGGCTTCTCTTAGTATTTGCTTCTCTGCTCGGCCACATCT 69
|||||||||||||||||||||||| |||||||||||||||||||||||||| ||| ||||
Sbjct 3 GGAGAAGAAGAAAATGGCGGTGGCGTCTCTTAGTATTTGCTTCTCTGCTCGACCAAATCT 62
Query 70 TCTTCTTCGCAACTTCTCTCCTCGACCC-AAATTTGTTGCTATGGCTGCAATGAGTGAGG 128
||||||| ||||||| |||||||||||| |||||| ||||||||||||||||||||||||
Sbjct 63 TCTTCTTTGCAACTTATCTCCTCGACCCAAAATTT-TTGCTATGGCTGCAATGAGTGAGG 121
Query 129 ATCCAATTCGTGAATGGATTCTTACAGAAGGAAAAGCAACTCAGATAACAAAGATTGGTT 188
|||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||
Sbjct 122 ATCCAATTCGTGAATGGATTCTTACACAAGGAAAAGCGACTCAGATAACAAAGATTGGTT 181
Query 189 CTGTTGGTGGTGGATGCATTAATCTTGCAAGTCATTATCAAACTGATGCTGGTTCTTTCT 248
||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 182 CTGTTGGTGGTGGATGCATTAATCTTGCAAGCCATTATCACACTGATGCTGGTTCTTTCT 241
Query 249 TCGTTAAAACTAACAGGAGTATTGGACCTGCCATGTTTGAGGGAGAGGCTCTTGGTCTTG 308
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 242 TCGTTAAAACTAACAGGAGTATTGGACCTGCAATGTTTGAGGGAGAGGCTCTTGGTCTTG 301
Query 309 AGGCTATGTATGAAACCAGAACAATCCGTGTTCCAAATCCACACAAAGCTGGGGAATTGC 368
||||||||||||||||||||||||||||||| || || |||||||||| |||||||||||
Sbjct 302 AGGCTATGTATGAAACCAGAACAATCCGTGTGCCTAAGCCACACAAAGTTGGGGAATTGC 361
Query 369 CAACAGGTGGATCTTATATCATCATGGAGTTTATAGATTTTGGGGGATCAAGAGGCAATC 428
|||||||||| |||||||| |||||||| ||||||||||||||||||||||||||||| |
Sbjct 362 CAACAGGTGGGTCTTATATAATCATGGAATTTATAGATTTTGGGGGATCAAGAGGCAACC 421
Query 429 AGGCTGAATTAGGAAGGAAGCTAGCTGAGATGCATAAAGCCGGGAAAACTTCGAAAGGTT 488
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
Sbjct 422 AGGCTGAATTAGGAAGGAAGCTAGCTGAGATGCATAAAGCCGGGAAATCTTCGAAAGGCT 481
Query 489 TTGGCTTTGAGGTTGACAACACTATTGGCAGTACCCCGCAGATCAATACTTGGTCTTCGG 548
||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 482 TTGGCTTTGAGGTTGACAACACTATTGGCAGTACCCCGCAGATAAATACTTGGTCATCGG 541
Query 549 ATTGGATTGAATTTTATGGTGAGAAGAGATTGGGTTACCAGCTTAAGTTAGCTAGGGATC 608
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 542 ATTGGATTGAATTTTATGGTGAGAAGAGATTGGGTTACCAGCTTAAGTTAGCTAGGGATC 601
Query 609 AGTATGGTGACTCTGCTATTTATCAGAAAGGTCATACACTGATACAGAACATGGCAC-CT 667
|||||||||||||||| |||||||||||||||||||||||||||||||||||||| | ||
Sbjct 602 AGTATGGTGACTCTGCAATTTATCAGAAAGGTCATACACTGATACAGAACATGGC-CTCT 660
Query 668 CTCTTTGAGAATGTTGTCATAGAACCGTGCTTGTTACATGGTGATCTCTGGAGCGGGAAT 727
|| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 661 CTATTTGAGAATGTTGTCATAGAACCGTGTTTGTTACATGGTGATCTCTGGAGCGGGAAT 720
Query 728 ATCGCATACGACAAGAACAACGAACCTGTCATTCTTGATCCTGCCTGTTACTATGGGCAT 787
||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 721 ATCGCATACGACACGAACAGTGAACCTGTCATTCTTGATCCTGCCTGTTACTATGGGCAT 780
Query 788 AACGAGGCGGATTTTGGAATGTCGTGGTGCGCAGGATTTGGAGAATCTTTCTACAATGCC 847
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 AACGAGGCGGATTTTGGAATGTCGTGGTGCGCAGGATTTGGAGAATCTTTCTACAATGCC 840
Query 848 TATTTCAAGGTAATGCCAAAACAAGCGGGATATGAGAAGAGGAGGGATCTGTATTTGCTC 907
||||||||||||||||| ||||||| ||||||||||||||| |||||||||||| |||||
Sbjct 841 TATTTCAAGGTAATGCCGAAACAAGTGGGATATGAGAAGAGAAGGGATCTGTATCTGCTC 900
Query 908 TATCATTACTTGAACCATTATAACCTGTTTGGCTCGGGCTACCGATCATCTGCGATGTCA 967
|||||||||||||| ||||||||||||||||||||||| || ||||||||||| |||||
Sbjct 901 TATCATTACTTGAATCATTATAACCTGTTTGGCTCGGGTTATCGATCATCTGCAATGTCG 960
Query 968 ATCATCGATGATTATCTACGGATGCTCAAAGCTTAAGATGAGGAGGGAAAGCTGCTGCTT 1027
||||| |||||||||||||||||||||||||||||| |||||||||||| ||||||||||
Sbjct 961 ATCATTGATGATTATCTACGGATGCTCAAAGCTTAAAATGAGGAGGGAA-GCTGCTGCTT 1019
Query 1028 ATATGCTTTCTTT-ATG-TGTGTATTTGTGTGTT-GGTGTTATGTAAGGTGGTTTATACG 1084
||| ||||||||| ||| | ||| || ||||||| |||||||||||||||||||||||||
Sbjct 1020 ATAGGCTTTCTTTTATGCT-TGT-TT-GTGTGTTTGGTGTTATGTAAGGTGGTTTATACG 1076
Query 1085 AAGAAAGATGTCTGTCATACATGTTTAAATCGATGATCTGGTTGTACATAGGTGGTAATG 1144
|||||| |||||| |||||||||||||||||||||||||||||||||||| | | |
Sbjct 1077 AAGAAAAATGTCTA--ATACATGTTTAAATCGATGATCTGGTTGTACATAGG-G-TGACA 1132
Query 1145 TGATGGAGAGAAGAATTCACAATCGATTTTAAACATTA-CAAATAAC-AACTAGTAATAA 1202
||||||||||||||||||||||||||||||||||| |||||| | ||||||||||||
Sbjct 1133 --ATGGAGAGAAGAATTCACAATCGATTTTAAACATTGTCAAATA-CTAACTAGTAATAA 1189
Query 1203 AAGCA 1207
|||||
Sbjct 1190 AAGCA 1194
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45518762898
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5