BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G61090.1

Length=597
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg899066 jgi|Araly1|899066|Al_scaffold_0005_3032                    494    4e-139


> Ahg899066 jgi|Araly1|899066|Al_scaffold_0005_3032
Length=375

 Score =  494 bits (267),  Expect = 4e-139
 Identities = 347/384 (90%), Gaps = 12/384 (3%)
 Strand=Plus/Plus

Query  163  GTTTATGGTGAGAGGACTAATAAGTTCAAGGATGACTTTCTCCTCGCTGATATCATGTTC  222
            ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1    GTTTATGGTGAGAAGACTAATAAGTTCAAGGATGACTTTCTCCTCGCTGATATCATGTTC  60

Query  223  TTACCCGCAGGAGATG-AAGGAGCGAGATTTATGAGGATGTGTAATGATTTCTTTTGCTG  281
            |||||||||| |  || ||| |||||||| |||||||||| | |||||||||||||||||
Sbjct  61   TTACCCGCAG-A--TGCAAG-AGCGAGATATATGAGGATGGGGAATGATTTCTTTTGCTG  116

Query  282  GGGAAATGACAATCGTAAATCAACTTTGATGGTAATGTCACGAGACAGCACTGAGTTCGC  341
            ||||  ||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct  117  GGGATTTGACAATCGTAAATCAACTTTGATGGTAATGTCACGAGACAACACTGAGTTCGC  176

Query  342  CTCTTCTTTCGTAATGTACAAAAACTTGAATTTCAACATTCTCGTAGCACAGCCAGAAAA  401
            ||||||| || |||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct  177  CTCTTCTCTCATAATGTACAAGAACTTGAATTTCAACATTCTCGTAGCACAGCCAGAAAA  236

Query  402  CGTAGACAGAAA-ATGTCCTGTCTGCAGAAAGCCTTTGGAA-ATGATCATCACTGACGAA  459
            || | ||| ||| |||| ||  ||||||||||||||||||  | ||| ||||| || |||
Sbjct  237  CGCACACA-AAAGATGTTCTAACTGCAGAAAGCCTTTGGACGA-GATTATCACCGATGAA  294

Query  460  TGGGTTTGGGAAAGCCTCTCTGCTGGAGGAGACCCTCTCCCCAAAACCCAAGAAGAACCA  519
            ||| |||||||||| ||||| ||||||||||||||| |  ||||||||||||||   |||
Sbjct  295  TGGATTTGGGAAAGTCTCTCAGCTGGAGGAGACCCTATTACCAAAACCCAAGAA---CCA  351

Query  520  GACCTTAGTAACTCTTGTCATTAA  543
            ||||||||||||||||||||||||
Sbjct  352  GACCTTAGTAACTCTTGTCATTAA  375



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 21863152497


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5