BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G61100.1
Length=693
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486580 jgi|Araly1|486580|fgenesh2_kg.5__2572__AT3G61100.1 723 0.0
> Ahg486580 jgi|Araly1|486580|fgenesh2_kg.5__2572__AT3G61100.1
Length=550
Score = 723 bits (391), Expect = 0.0
Identities = 500/553 (90%), Gaps = 5/553 (1%)
Strand=Plus/Plus
Query 2 CTCTTCCACCGCCGCAGATCTAAAACCCTGATTTCTCGGGTGTTGGTCGAAACCATGACC 61
||||||||||||||||| ||||||||||| |||| || ||| ||||||||||| ||| ||
Sbjct 1 CTCTTCCACCGCCGCAGTTCTAAAACCCTAATTTATC-GGTTTTGGTCGAAACAATGGCC 59
Query 62 ACTGAGGAAGAGGATAAGGTAGTCGTCTTCTGGGACGTCGTAGAATGCCCACTCCCTGAT 121
|||| ||||| ||| ||| |||| |||||||||||||| |||||||||||||||||||||
Sbjct 60 ACTGTGGAAGTGGAAAAGATAGTTGTCTTCTGGGACGTAGTAGAATGCCCACTCCCTGAT 119
Query 122 GATCTCGAGCCTTCTGAGGTTTCTGAGAATATCGAATC-AGCTCTAGATAGACAGGGTTA 180
|||||| ||||||| |||||||| |||||||||| | ||||||| | |||||||||||
Sbjct 120 GATCTCTTGCCTTCTTTGGTTTCTGGGAATATCGAA-CTAGCTCTACAGAGACAGGGTTA 178
Query 181 TCTTCCTTGTAATGTGTCAATCAGGGTTTACGGTAAGAAGAATCATGAGTTCAAGGATGA 240
|||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||
Sbjct 179 TCTTCCTTGTAATGTGTCAATCAGGGTTTATGGTAAGAAGAATTATGAGTTCAAGGATGA 238
Query 241 GTTTCTCCTCGCTAATATCATGTTCGTACCCGCAGGAGATGCAAATGCGAGATATAATAG 300
||||||||||||||||||||||||| | |||||||||||||||| |||||||| ||| ||
Sbjct 239 GTTTCTCCTCGCTAATATCATGTTCTTGCCCGCAGGAGATGCAAGTGCGAGATGTAAAAG 298
Query 301 GATGGTGAAGGATATTGATAAATGGGCATTGGACAATGATGAATCAGATTTGATGGTGAT 360
|||||||||||||||||||||||||||||||| ||||| ||||||| |||||||||| ||
Sbjct 299 GATGGTGAAGGATATTGATAAATGGGCATTGGGCAATGGTGAATCACATTTGATGGTAAT 358
Query 361 CTCACGAGTCAACTCGAAGTTCGCCACTTATCTCGCAGATTGGAAAGCCAAAGACTTGTA 420
||||||||||||| || ||||||||||||||||||||||||||||||| | ||||||| |
Sbjct 359 CTCACGAGTCAACACGGAGTTCGCCACTTATCTCGCAGATTGGAAAGCGAGAGACTTGAA 418
Query 421 CATTTTCGGAGCAGAG-CCAGAAAAAGCACCAGGGAAATGTAGCAACTGCAAAGTTACGA 479
||| |||| ||| || |||||||| |||||||| ||||||||||| |||||| | ||||
Sbjct 419 GATTCTCGGGGCA-AGGCCAGAAAACGCACCAGGAAAATGTAGCAATTGCAAAATGACGA 477
Query 480 GTTTGGACGAGCTTTTCACTCAACAATGGGTTTGGGAAAGCCTATCACTTGGAGGAGACC 539
|||||||||||||||||||||| ||||||||||||||||||||||| || |||||||||
Sbjct 478 CTTTGGACGAGCTTTTCACTCAAGAATGGGTTTGGGAAAGCCTATCAGTTAGAGGAGACC 537
Query 540 CTATCACCCGAGC 552
|||||||| ||||
Sbjct 538 CTATCACCAGAGC 550
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25466108556
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5