BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G61110.1
Length=609
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486581 jgi|Araly1|486581|fgenesh2_kg.5__2573__AT3G61110.1 621 2e-177
Ahg899069 jgi|Araly1|899069|Al_scaffold_0005_3035 313 1e-84
Ahg902607 jgi|Araly1|902607|Al_scaffold_0004_3257 300 9e-81
> Ahg486581 jgi|Araly1|486581|fgenesh2_kg.5__2573__AT3G61110.1
Length=463
Score = 621 bits (336), Expect = 2e-177
Identities = 442/488 (91%), Gaps = 28/488 (6%)
Strand=Plus/Plus
Query 7 CCTTTCTCTCTCGCCTATTGTTGCCGTTGCTTGCTATCTTTCGCCGTCGTCTCTTTAGCT 66
|||||||||||||| |||||||||||||||||||||||||||||||||||||||| || |
Sbjct 2 CCTTTCTCTCTCGCTTATTGTTGCCGTTGCTTGCTATCTTTCGCCGTCGTCTCTTGAGAT 61
Query 67 TCTTGCGAAGATGGTTCTTCAAAACGATATCGATCTGCTTAACCCACCTGCTGAGCTTGA 126
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 62 TCTTGCGAAGATGGTTCTTCAAAACGATATCGATCTGCTTAACCCACCTGCTGAGCTTGA 121
Query 127 GAAGAGGAAGCACAAGCTCAAGCGTCTTGTCCAGTCTCCCAATTCCTTCTTCATGGATGT 186
|||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 122 GAAGAGGAAGCACAAGCTCAAGCGTCTTGTTCAGTCTCCTAATTCCTTCTTCATGGATGT 181
Query 187 GAAGTGCCAAGGCTGCTTCAACATCACTACTGTTTTCAGTCACTCGCAGACTGTTGTGGT 246
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
Sbjct 182 GAAGTGCCAAGGCTGCTTCAACATCACGACTGTTTTCAGTCACTCGCAGACTGTTGTGAT 241
Query 247 GTGCGGAAACTGCCAGACAATTCTGTGCCAGCCTACAGGAGGAAAGGCAAAGCTCACCGA 306
||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 242 GTGCGGAAACTGCCAAACAATTCTGTGCCAGCCTACAGGAGGAAAGGCAAAACTCACCGA 301
Query 307 AGGATGCTCTTTCAGGAGAAAGGGTGATTGATTGAAGCAATCATCAAAATAATGAAGGCT 366
||||||||||||||||||||||| ||||||||||||||||| |||| | | |
Sbjct 302 GGGATGCTCTTTCAGGAGAAAGGGAGATTGATTGAAGCAATCGTCAA--T--T------T 351
Query 367 GttttctttttcttttttttttGTTGTTGTTGGCTATGATGTTATCTCTGGAAT-TTTAA 425
|||| | ||| | ||||||| | ||||||| |||| |||||| | |||||
Sbjct 352 -TTTT-TGTTT-T---------GTTGTTG--G-CTATGATATTATGTCTGGA-TCTTTAA 395
Query 426 AATGTTTGGATTTTTAATATAAGTAAGCAG-AGTTTGCTCTTTTACTTTTGAGATTATCC 484
|||||||||||||||||||||| ||||||| |||||| |||||||||||||||||||| |
Sbjct 396 AATGTTTGGATTTTTAATATAATTAAGCAGGAGTTTGTTCTTTTACTTTTGAGATTATTC 455
Query 485 CCAAGTCT 492
||||||||
Sbjct 456 CCAAGTCT 463
> Ahg899069 jgi|Araly1|899069|Al_scaffold_0005_3035
Length=261
Score = 313 bits (169), Expect = 1e-84
Identities = 224/250 (90%), Gaps = 6/250 (2%)
Strand=Plus/Plus
Query 77 ATGGTTCTTCAAAACGATATCGATCTGCTTAACCCACCTGCTGAGCTTGAGAAGAGGAAG 136
||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 1 ATGGTTCTTCAAAACGATATCGATCTGCTTAACCCTCCAGCTGAGCTTGAGAAGAGGAAG 60
Query 137 CACAAGCTCAAGCGTCTTGTCCAGTCTCCCAATTCCT-TCTTCATGGATGTGAAGTGCCA 195
|| ||||||||||||||||| |||||||||||||||| | |||||| |||||| |||| |
Sbjct 61 CATAAGCTCAAGCGTCTTGTTCAGTCTCCCAATTCCTAT-TTCATGTATGTGAGGTGCTA 119
Query 196 AGGCTGCTTCAACATCACTACTGTTTTCAGTCACTCGCAGACTGTTGTGGTGTGCGGAAA 255
||||||||||||||||| ||| ||||||||||||| ||||| || ||||| || |||||
Sbjct 120 TGGCTGCTTCAACATCACGACTATTTTCAGTCACTCACAGACAGTCGTGGTATGGGGAAA 179
Query 256 CTGCCAGA-CAATTCTGTGCCAGCCTACAGGAGGAAAGGCAAAGCTC-ACCGAAGGATGC 313
||||||| | |||||||||||||||||||||||||||| | |||| | |||||||||
Sbjct 180 ATGCCAGAACG-TTCTGTGCCAGCCTACAGGAGGAAAGGCCAGGCTCCAA-GAAGGATGC 237
Query 314 TCTTTCAGGA 323
||||||||||
Sbjct 238 TCTTTCAGGA 247
> Ahg902607 jgi|Araly1|902607|Al_scaffold_0004_3257
Length=261
Score = 300 bits (162), Expect = 9e-81
Identities = 224/254 (88%), Gaps = 4/254 (2%)
Strand=Plus/Plus
Query 77 ATGGTTCTTCAAAACGATATCGATCTGCTTAACCCACCTGCTGAGCTTGAGAAGAGGAAG 136
||||| |||||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 1 ATGGTCCTTCAAAACGATATTGATCTGCTTAACCCCCCTGCTGAGCTTGAGAAGAGGAAG 60
Query 137 CACAAGCTCAAGCGTCTTGTCCAGTCTCCCAATTCCTTCTTCATGGATGTGAAGTGCCAA 196
|||||||| ||||||||||| |||||||||||||| || ||||||||||| ||||| |||
Sbjct 61 CACAAGCTTAAGCGTCTTGTTCAGTCTCCCAATTCATTTTTCATGGATGTCAAGTGTCAA 120
Query 197 GGCTGCTTCAACATCACTACTGTTTTCAGTCACTCGCAGACTGTTGTGGTGTGCGGAAAC 256
|||||||| ||||| || || || ||||| ||||| ||||| |||||| |||| ||||||
Sbjct 121 GGCTGCTTTAACATTACAACGGTGTTCAGCCACTCTCAGACCGTTGTGATGTGTGGAAAC 180
Query 257 TGCCAGACAATT-CTGTGC-CAGCCTACAGGAGGAAAGGCAAAGCTCACCGAAGGATGCT 314
|||||||| || || ||| || || || ||||||||||||| |||||| ||||||||||
Sbjct 181 TGCCAGACT-TTGCTTTGCACACCC-ACCGGAGGAAAGGCAAGGCTCACTGAAGGATGCT 238
Query 315 CTTTCAGGAGAAAG 328
||||||||| ||||
Sbjct 239 CTTTCAGGAAAAAG 252
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22263783528
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5