BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G61111.1

Length=344
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg486581 jgi|Araly1|486581|fgenesh2_kg.5__2573__AT3G61110.1         339    1e-92
  Ahg899069 jgi|Araly1|899069|Al_scaffold_0005_3035                    333    5e-91


> Ahg486581 jgi|Araly1|486581|fgenesh2_kg.5__2573__AT3G61110.1
Length=463

 Score =  339 bits (183),  Expect = 1e-92
 Identities = 275/318 (86%), Gaps = 12/318 (4%)
 Strand=Plus/Plus

Query  19   CTCTCTCGCGAATTGTTGCCGTTGCTTGCTAGCTTTCGCCGTCGTCTCTTGAGAGTCTTG  78
            |||||||||  |||||||||||||||||||| |||||||||||||||||||||| |||||
Sbjct  7    CTCTCTCGCTTATTGTTGCCGTTGCTTGCTATCTTTCGCCGTCGTCTCTTGAGATTCTTG  66

Query  79   CGAAGATGGTTCTTCAAAACGATATCGATCTGCTTAATCCTCCGGCTGAGCTTGAGAAGA  138
            ||||||||||||||||||||||||||||||||||||| || || ||||||||||||||||
Sbjct  67   CGAAGATGGTTCTTCAAAACGATATCGATCTGCTTAACCCACCTGCTGAGCTTGAGAAGA  126

Query  139  GGAAGCATAAGCTCAAGCGTCTTGTTCCA-TCACCAAATTCCTAT-TTCATGCTTGTTAG  196
            ||||||| ||||||||||||||||||| | || || ||||||| | ||||||  ||| | 
Sbjct  127  GGAAGCACAAGCTCAAGCGTCTTGTTC-AGTCTCCTAATTCCT-TCTTCATGGATGTGAA  184

Query  197  GTGCTCT-GACTG-TATCAACATCACAACTATTTTCAGTCACTCACAGACAGTCGTGGTA  254
            |||| |  | ||| | |||||||||| ||| ||||||||||||| ||||| || ||| | 
Sbjct  185  GTGC-CAAGGCTGCT-TCAACATCACGACTGTTTTCAGTCACTCGCAGACTGTTGTGATG  242

Query  255  TGCGGAAAGTGTCAGAACG-TTCTGTGCCAACCTACAGGAGGCAAGGCCAAGCTCACAGT  313
            |||||||| || || |||  |||||||||| ||||||||||| ||||| || ||||| | 
Sbjct  243  TGCGGAAACTGCCA-AACAATTCTGTGCCAGCCTACAGGAGGAAAGGCAAAACTCACCG-  300

Query  314  AGG-ATGCTCTTTCAGGA  330
            ||| ||||||||||||||
Sbjct  301  AGGGATGCTCTTTCAGGA  318


> Ahg899069 jgi|Araly1|899069|Al_scaffold_0005_3035
Length=261

 Score =  333 bits (180),  Expect = 5e-91
 Identities = 230/253 (91%), Gaps = 8/253 (3%)
 Strand=Plus/Plus

Query  84   ATGGTTCTTCAAAACGATATCGATCTGCTTAATCCTCCGGCTGAGCTTGAGAAGAGGAAG  143
            |||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct  1    ATGGTTCTTCAAAACGATATCGATCTGCTTAACCCTCCAGCTGAGCTTGAGAAGAGGAAG  60

Query  144  CATAAGCTCAAGCGTCTTGTTCCA-TCACCAAATTCCTATTTCATGCT-TGTTAGGTGCT  201
            |||||||||||||||||||||| | || || ||||||||||||||| | ||| |||||||
Sbjct  61   CATAAGCTCAAGCGTCTTGTTC-AGTCTCCCAATTCCTATTTCATG-TATGTGAGGTGCT  118

Query  202  CTGACTG-TATCAACATCACAACTATTTTCAGTCACTCACAGACAGTCGTGGTATGCGGA  260
             || ||| | |||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct  119  ATGGCTGCT-TCAACATCACGACTATTTTCAGTCACTCACAGACAGTCGTGGTATGGGGA  177

Query  261  AAGTGTCAGAACGTTCTGTGCCAACCTACAGGAGGCAAGGCCAAGCTCACA-GTAGGATG  319
            || || ||||||||||||||||| ||||||||||| ||||||| |||| || | ||||||
Sbjct  178  AAATGCCAGAACGTTCTGTGCCAGCCTACAGGAGGAAAGGCCAGGCTC-CAAGAAGGATG  236

Query  320  CTCTTTCAGGAAG  332
            |||||||||||||
Sbjct  237  CTCTTTCAGGAAG  249



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 12209788480


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5