BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G61113.1
Length=300
Score E
Sequences producing significant alignments: (Bits) Value
Ahg899070 jgi|Araly1|899070|Al_scaffold_0005_3036 449 4e-126
> Ahg899070 jgi|Araly1|899070|Al_scaffold_0005_3036
Length=285
Score = 449 bits (243), Expect = 4e-126
Identities = 265/276 (96%), Gaps = 0/276 (0%)
Strand=Plus/Plus
Query 25 GGAGGTTTAGAATTGCTCTGTGACTCCGTAAAGATTCATAAAGTTAACATCAACTTACTC 84
||||||||||||||||||||||||||||| |||||||||||||||||||||||||| | |
Sbjct 10 GGAGGTTTAGAATTGCTCTGTGACTCCGTCAAGATTCATAAAGTTAACATCAACTTCCCC 69
Query 85 AATGATTCTGATATCTTGACAATGAAGGATTTGCTTTCATGGGTTCGTACCAATTTGATC 144
||||| |||||| |||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 70 AATGAATCTGATGTCTTGACAATGAAGGATTTGCTATCATGGGTTCGTACCAATTTGATC 129
Query 145 AAGGAAAGGCCTGAAATGTTCATGAAAGGCGATACCGTGAGGCCTGGAGTTCTCGTGCTG 204
||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 130 AAGGAAAGGCCTGAAATGTTCATGAAAGGCGATACTGTGAGACCTGGAGTTCTCGTGCTG 189
Query 205 GTTAATGACTGCGATTGGGAACTTAGTGGTCAGCTCGATACAACATTAGAAGATAAAGAT 264
||||| |||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 190 GTTAACGACTGCGATTGGGAACTTAGCGGCCAGCTCGATACAACATTAGAAGATAAAGAT 249
Query 265 GTTATAGTTTTCATTTCGACTCTGCACGGTGGATGA 300
||||||||||||||||||||||||||||||||||||
Sbjct 250 GTTATAGTTTTCATTTCGACTCTGCACGGTGGATGA 285
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 10530942564
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5