BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G61120.1
Length=915
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486583 jgi|Araly1|486583|fgenesh2_kg.5__2575__AT3G61120.1 1160 0.0
> Ahg486583 jgi|Araly1|486583|fgenesh2_kg.5__2575__AT3G61120.1
Length=847
Score = 1160 bits (628), Expect = 0.0
Identities = 724/770 (94%), Gaps = 7/770 (1%)
Strand=Plus/Plus
Query 1 Aaagaagagagagagcgagtgagagatgggaagaggcaaagtggaagtgaagagaattga 60
|||||||||| |||||||| | |||||||||||||| |||||||||||||||||||||||
Sbjct 1 AAAGAAGAGACAGAGCGAG-G-GAGATGGGAAGAGGGAAAGTGGAAGTGAAGAGAATTGA 58
Query 61 gaacaagaTCACTAGACAAGTAACCTTCTCCAAAAGAAAAAGTGGTTTGCTCAAGAAAGC 120
|||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 59 GAACAAGACCACAAGACAAGTAACCTTCTCCAAAAGAAAAAGTGGTTTGCTCAAGAAAGC 118
Query 121 CTACGAACTCTCTGTTCTTTGTGATGCAGAGGTTTCTCTCATAATCTTCTCCACCGGTGG 180
|||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||
Sbjct 119 CTACGAACTCTCTGTTCTATGTGATGCAGAGGTTTCTCTCATAATCTTCTCCAACGGTGG 178
Query 181 CAAGCTCTACGAGTTCAGCAATGTCGGAGTTGGCAGAACCATTGAGAGGTACTATCGCTG 240
|||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 179 CAAGCTCTACGAGTTCAGCAATGTCGGAATTGGCCGAACCATTGAGAGGTACTATCGCTG 238
Query 241 TAAAGACAATCTT-TTGGACAAT---GATACGCTTGAAGATACTCAGGGCTTGCGTCAAG 296
|||| ||||| || ||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 239 TAAAAACAAT-TTGTTGGACAATAATGATACGCTTGAAGATACTCAGGGCTTGCGTCAAG 297
Query 297 AGGTGACAAAGCTCAAATGCAAATACGAATCTCTTCTTCGCACTCATAGGAATTTGGTTG 356
||||||||||||| |||| |||||| ||||||||||| ||||||||||| ||||||||||
Sbjct 298 AGGTGACAAAGCTGAAATCCAAATATGAATCTCTTCTCCGCACTCATAGAAATTTGGTTG 357
Query 357 GGGAAGATCTTGAAGGGATGAGTATAAAGGAATTGCAGACGCTGGAGAGACAGCTTGAAG 416
||||||||||||||||||||||| |||||||| |||||||||| ||||||||||| ||||
Sbjct 358 GGGAAGATCTTGAAGGGATGAGTGTAAAGGAACTGCAGACGCTCGAGAGACAGCTAGAAG 417
Query 417 GAGCTCTTTCCGCAACCCGAAAACAAAAGACGCAGGTTATGATGGAACAAATGGAAGAGC 476
||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||
Sbjct 418 GAGCTCTTTCCGCAACCCGAAAACACAAGACGCAGGTTGCGATGGAACAAATGGAAGAGC 477
Query 477 TTCGGAGAAAGGAGAGGGAGCTCGGAGATATAAACAATAAGCTAAAGCTTGAGACAGAAG 536
|||||||||||||||||||||| |||||||||||||||||||| ||||||||||| ||||
Sbjct 478 TTCGGAGAAAGGAGAGGGAGCTTGGAGATATAAACAATAAGCTTAAGCTTGAGACCGAAG 537
Query 537 ATCATGATTTTAAAGGCTTTCAAGACCTACTGCTTAACCCGGTGCTCACCGCCGGTTGTT 596
|||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 538 ATCATGATTTTAGAGGCTTTCAAGACCTACTGCTTAACCCGGTGCTCACGGCCGGTTGTT 597
Query 597 CCACTGATTTTTCCTTGCAATCAACTCATCAAAATTATATATCGGATTGCAACCTTGGAT 656
||||||||||| | || |||||| |||||||||||||||||| |||||| || | ||||
Sbjct 598 CCACTGATTTTGCGTTTCAATCATCTCATCAAAATTATATATTAGATTGCGACGTGGGAT 657
Query 657 ATTTTTTACAGATTGGGTTTCAACAACACTATGAGCAAGGTGAAGGATCTTCGGTGACAA 716
| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 658 ACCTTTTACAGATTGGGTTTCAACAACACTATGAGCAAGGTGAAGGATCTTCGGTGTCAA 717
Query 717 AGAGTAATGCAAGAAGTGATGCTGAGACCAACTTTGTCCAATGATGGGTT 766
||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 718 AGAGTAATGCAAGAAGTGATGTTGAGACCAACTTTGTCCAATGATGGGTT 767
Score = 69.4 bits (37), Expect = 4e-11
Identities = 50/56 (89%), Gaps = 2/56 (4%)
Strand=Plus/Plus
Query 792 AGTCACGACGAAGCGTTTAGGTCATTTACTATCGGGACATAC-T-Ctttttttttt 845
|||||||||||||||||||||||||||||||| |||||||| | || |||| |||
Sbjct 768 AGTCACGACGAAGCGTTTAGGTCATTTACTATAAGGACATACATACTCTTTTCTTT 823
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33929396130
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5