BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G61130.1
Length=2569
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486584 jgi|Araly1|486584|fgenesh2_kg.5__2576__AT3G61130.1 3888 0.0
> Ahg486584 jgi|Araly1|486584|fgenesh2_kg.5__2576__AT3G61130.1
Length=2510
Score = 3888 bits (2105), Expect = 0.0
Identities = 2410/2549 (95%), Gaps = 53/2549 (2%)
Strand=Plus/Plus
Query 4 AATCGATAAAAGAGATCTGTGTCAAAAGTACGCGTGAGGTTCTCTCTTCTCTGCAAACAA 63
||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||
Sbjct 1 AATCGATAAAAGAGATCTGTGTC--AAGTACGCGTGAGGTTCTCTCTTCCCTGCAAACAA 58
Query 64 AAATCCTGGCGTTGATAGCGATTGGTTAATTGTCGGTGAATCAACGTTTTTCTGTTACAC 123
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 59 AAATCCTGGCGTTGATAGCGATTGGTTAATTGTCGGTGTATCAACGTTTTTCTGTTGCAC 118
Query 124 ATATCAATCAATCATCATCCTCTTCATACTCTCTTC-TTCTTCTTCATCGTAATCATTAG 182
| |||||||||||||| ||||| | | ||||| | | || || || | || ||
Sbjct 119 ACGTCAATCAATCATCA---TCTTC-T--T-TCTTCATAC-TC-TCTTC-T--TC-TT-- 163
Query 183 CTTCAATTCCGAGTTTTCTCTTCGTCGCCGTTGTGCTAGAGTTTTGTCAGATCTCGCCGG 242
|||||||||| |||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 164 CTTCAATTCCTAGTTTTCTCTTCATCGCCGTTGTGCTAGAG-TTTGTCAGATCTCGCCGG 222
Query 243 GAAATTAGCAATGGCGTTTTAGTCTGTTTACCTGTGAAGCTTTTGCGTAAACGCTGGATT 302
|||||| ||||||||||||||||||||||||||||||| | | |||||||
Sbjct 223 GAAATTCGCAATGGCGTTTTAGTCTGTTTACCTGTGAA--------G----C-CTGGATT 269
Query 303 CTTCTCAAATCTCTCTCACCTGATCTCTTATTAGATTCCGAGGATGGCGCTAAAGCGAGG 362
||||||||| ||||| ||||||||||| |||||||||||| |||||||||||||||||
Sbjct 270 CTTCTCAAA--TCTCTGACCTGATCTCTCATTAGATTCCGA--ATGGCGCTAAAGCGAGG 325
Query 363 GCTATCTGGAGTTAACCGGATTAGAGGAAGTGGTGGTGGATCTCGATCTGTGCTTGTGCT 422
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 326 GCTATCTGGAGTTAACCGGATTAGAGGAAGTGGTGGTGGATCTCGATCTGTACTTGTTCT 385
Query 423 TCTCATATTTTTCTGTGTTTTTGCACCTCTTTG-CTTCTTTGTTGGCCGAGGAGTGTATA 481
||||| |||||||||||||| ||||||| ||| |||||| ||||||||||||||||| |
Sbjct 386 GCTCATCTTTTTCTGTGTTTTCGCACCTC-TTGTCTTCTTCGTTGGCCGAGGAGTGTACA 444
Query 482 TCGATTCCTCAAATGATTATTCAATTGTTTCTGTGAAGCAGAATCTTGACTGGAGAGAAC 541
|||||||||||| ||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 445 TCGATTCCTCAACTGATTATTCAAATGCTTCTGTGAAGCAGAATCTTGACTGGAGAGAAC 504
Query 542 GTTTAGCAATGCAATCTGTTAGATCTCTTTTCTCGAAAGAGATACTAGATGTTATAGCAA 601
||||||||||||||||||||||||||||||||||||||||| |||| |||||||| | ||
Sbjct 505 GTTTAGCAATGCAATCTGTTAGATCTCTTTTCTCGAAAGAGGTACTGGATGTTATCGAAA 564
Query 602 CCAGCACAGCTGATTTGGGTCCTCTTAGCCTTGATTCTTTTAAGAAAAACAATTTGTCTG 661
| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 565 CTAGCACAGCTGATTTGGGTCCTCTTAGCCTTGATTCTTTCAAGAAAAACAATTTGTCTG 624
Query 662 CATCATGGCGGGGAACCGGAGTAGACCCCTCCTTTAGACATTCTGAGAATCCAGCAACTC 721
|||||||||||||| |||||||| |||||||||||||||||||||| ||| ||||||
Sbjct 625 CATCATGGCGGGGAGTTGGAGTAGATACCTCCTTTAGACATTCTGAGAACCCAACAACTC 684
Query 722 CTGATGTCAAATCTAATAACCTGAATGAAAAACGTGACAGCATTTCAAAAGATAGTATCC 781
||||| ||| |||||||| ||||||||||||||||||||||||||||||||| |||| ||
Sbjct 685 CTGATATCAGATCTAATATCCTGAATGAAAAACGTGACAGCATTTCAAAAGACAGTAGCC 744
Query 782 ATCAGAAAGTTGAGACACCTACAAAGATTCACAGAAGGCAACTAAGAGAGAAAAGGCGTG 841
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 745 ATCAGAAAGTTGAGACACCTACAAAGATTCACAGAAGGCAACTAAGAGAGAAAAGGCGTG 804
Query 842 AGATGCGGGCAAATGAGTTAGTTCAGCACAATGATGACACGATTTTGAAACTCGAAAATG 901
||||||| ||||||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct 805 AGATGCGAGCAAATGAGTTGGTTCAGCACAATGATGACACAATTTTGAAACTCGAAAATG 864
Query 902 CTGCCATTGAACGCTCTAAGTCTGTTGATTCTGCAGTCCTTGGTAAATACAGTATTTGGA 961
| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 865 CGGCCATTGAACGCTCTAAATCTGTTGATTCTGCAGTCCTTGGTAAATACAGTATTTGGA 924
Query 962 GAAGAGAAAATGAGAATGACAACTCTGATTCAAATATACGCTTGATGCGGGATCAAGTAA 1021
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 925 GAAGAGAAAATGAGAATGACAACTCTGATTCAAATATACGCTTGATGCGGGATCAAGTAA 984
Query 1022 TAATGGCTAGAGTCTATAGTGGGATTGCAAAATTGAAAAACAAGAACGATTTGTTACAAG 1081
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 985 TAATGGCTAGAGTCTATAGTGGGATTGCAAAATTGAAAAACAAGAATGATTTGTTACAAG 1044
Query 1082 AACTCCAGGCCCGACTTAAGGACAGCCAACGGGTTTTGGGGGAAGCAACATCTGATGCTG 1141
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1045 AACTCCAGGCCCGACTTAAGGACAGCCAACGGGTTTTGGGGGAATCAACATCTGATGCTG 1104
Query 1142 ATCTTCCTCGGAGTGCGCATGAGAAACTCAGAGCCATGGGTCAAGTCTTGGCTAAAGCTA 1201
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1105 ATCTTCCTCGGAGTGCACATGAGAAACTCAGAGCCATGGGTCAAGTCTTGGCTAAAGCTA 1164
Query 1202 AGATGCAGTTATATGACTGCAAGCTGGTTACTGGAAAGCTGAGAGCAATGCTTCAGACTG 1261
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1165 AGATGCAGTTATATGACTGCAAGTTGGTTACTGGAAAGCTGAGAGCAATGCTTCAGACTG 1224
Query 1262 CCGACGAACAAGTGAGGAGCTTAAAGAAGCAGAGTACTTTTCTGGCTCAGTTAGCAGCAA 1321
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1225 CCGACGAACAAGTCAGGAGCTTAAAGAAGCAGAGTACTTTTCTGGCTCAGTTAGCAGCAA 1284
Query 1322 AAACCATTCCAAATCCTATCCATTGCCTATCAATGCGCTTGACTATCGATTACTATCTTC 1381
|||| |||||||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 1285 AAACAATTCCAAATCCTATCCATTGCCTATCGATGCGCTTGACCATCGATTACTATCTTC 1344
Query 1382 TGTCTCCGGAGAAAAGAAAATTCCCTCGGAGTGAAAACCTAGAAAACCCTAATCTTTATC 1441
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1345 TGTCTCCAGAGAAAAGAAAATTCCCTCGGAGTGAAAACCTAGAAAACCCTAATCTTTATC 1404
Query 1442 ATTATGCCCTCTTTTCCGACAATGTATTAGCTGCATCAGTAGTTGTTAACTCAACCATCA 1501
|||||||||||||||| ||||||||| ||||||||||||| |||||||||||||||||||
Sbjct 1405 ATTATGCCCTCTTTTCTGACAATGTACTAGCTGCATCAGTGGTTGTTAACTCAACCATCA 1464
Query 1502 TGAATGCCAAGGATCCTTCTAAGCATGTTTTTCACCTTGTCACGGATAAACTCAATTTCG 1561
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 1465 TGAATGCCAAGGATCCTTCTAAGCATGTTTTTCACCTTGTCACGGATAAACTGAATTTTG 1524
Query 1562 GAGCAATGAACATGTGGTTCCTCCTAAACCCACCCGGAAAGGCAACCATACATGTGGAAA 1621
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1525 GAGCAATGAACATGTGGTTCCTCCTAAACCCACCCGGAAAGGCAACCATACATGTGGAAA 1584
Query 1622 ACGTCGATGAGTTTAAGTGGCTCAATTCATCTTACTGTCCTGTCCTTCGTCAGCTTGAAT 1681
|||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1585 ACGTTGATGAGTTTAAGTGGCTCAATTCATCTTACTGCCCTGTCCTTCGTCAGCTTGAAT 1644
Query 1682 CTGCAGCAATGAGAGAGTACTATTTTAAAGCAGACCATCCAACTTCAGGCTCTTCGAATC 1741
|||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1645 CTGCAGCAATGAGAGAATACTATTTTAAAGCAGACCATCCAACTTCAGGCTCTTCAAATC 1704
Query 1742 TAAAATACAGAAACCCAAAGTATCTATCCATGTTGAATCACTTGAGATTCTACCTCCCTG 1801
| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1705 TGAAATATAGAAACCCAAAGTATCTATCCATGTTGAATCACTTGAGATTCTACCTCCCTG 1764
Query 1802 AGGTTTATCCCAAGCTGAACAAAATCCTCTTCCTGGACGATGACATCATTGTTCAGAAAG 1861
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1765 AGGTTTATCCCAAGCTGAACAAAATCCTCTTCCTGGACGACGACATCATTGTTCAGAAAG 1824
Query 1862 ACTTGACTCCACTCTGGGAAGTTAACCTGAACGGCAAAGTCAACGGTGCAGTCGAAACCT 1921
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1825 ACTTGACTCCACTCTGGGAAGTTAACCTGAACGGCAAAGTCAACGGTGCAGTTGAAACCT 1884
Query 1922 GTGGGGAAAGTTTCCACAGATTCGACAAGTATCTCAACTTTTCGAATCCTCACATTGCGA 1981
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1885 GTGGGGAAAGTTTCCACAGATTCGACAAGTATCTTAACTTTTCGAATCCTCACATTGCGA 1944
Query 1982 GGAACTTCAATCCAAATGCTTGTGGATGGGCTTATGGAATGAACATGTTCGACCTAAAGG 2041
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1945 GGAACTTCAATCCAAATGCTTGTGGATGGGCTTATGGAATGAACATGTTCGACCTAAAGG 2004
Query 2042 AATGGAAGAAGAGAGACATCACTGGTATATACCACAAGTGGCAAAACATGAATGAGAACA 2101
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 2005 AATGGAAGAAGAGAGACATCACTGGTATATACCATAAGTGGCAAAACATGAATGAGAACA 2064
Query 2102 GGACACTATGGAAGCTAGGGACATTGCCACCAGGATTAATAACATTCTACGGATTAACAC 2161
||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 2065 GGACACTATGGAAACTAGGGACATTACCACCAGGATTAATAACATTCTACGGATTAACAC 2124
Query 2162 ATCCCTTAAACAAGGCGTGGCATGTGCTGGGACTTGGATATAACCCGAGTATCGACAAGA 2221
|||||||||||||||||||||||||||| |||||||||||||| |||||||| || | ||
Sbjct 2125 ATCCCTTAAACAAGGCGTGGCATGTGCTTGGACTTGGATATAATCCGAGTATTGATAGGA 2184
Query 2222 AGGACATTGAGAATGCAGCAGTGGTTCACTATAACGGGAACATGAAACCATGGTTGGAGT 2281
| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 2185 AAGACATTGAGAATGCAGCAGTGGTTCACTATAACGGGAACATGAAACCTTGGTTGGAGT 2244
Query 2282 TGGCAATGTCCAAATATCGGCCGTATTGGACCAAGTACATCAAGTTTGATCACCCATATC 2341
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2245 TGGCAATGTCCAAGTATCGGCCGTATTGGACCAAGTACATCAAGTTTGATCACCCATATC 2304
Query 2342 TTCGTCGTTGCAACCTTCATGAATAAAATCAAATCTTTGTTAGATGATTTGAGGTAATTA 2401
| ||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 2305 TACGTCGATGCAACCTTCATGAATAAA-TCAAATCTTTGTTAGATGATTTGAGGTAATTA 2363
Query 2402 CTTCTAATGTTCTGTTGTTCCCAT-TCCATTGCTCTTTATTCCACACATTGTTAATTGTT 2460
||||||||| |||||||||||||| || ||| |||||||||||||| |||||||||||||
Sbjct 2364 CTTCTAATGCTCTGTTGTTCCCATCTC-ATTCCTCTTTATTCCACAGATTGTTAATTGTT 2422
Query 2461 TATTCATATCGTTT-TTTAGTCAttcttttct-t--ct-cttcttctt-t-c----GGGT 2509
|||||||||| ||| ||||||||||||||||| | || ||||||||| | | |||
Sbjct 2423 TATTCATATC-TTTGTTTAGTCATTCTTTTCTCTTTCTTCTTCTTCTTCTTCTTTCGGGC 2481
Query 2510 TAAAAACACTTATGTTATTTTTTGAGTTT 2538
||||||||||| |||||||||||||||||
Sbjct 2482 TAAAAACACTTGTGTTATTTTTTGAGTTT 2510
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 96863493035
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5