BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G61140.1
Length=1857
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486585 jgi|Araly1|486585|fgenesh2_kg.5__2577__AT3G61140.1 2627 0.0
> Ahg486585 jgi|Araly1|486585|fgenesh2_kg.5__2577__AT3G61140.1
Length=1745
Score = 2627 bits (1422), Expect = 0.0
Identities = 1627/1721 (95%), Gaps = 34/1721 (2%)
Strand=Plus/Plus
Query 1 ACGAAACGAAGAACAAACACTGAAAC---AA----A--AGAG---AAAAATCCCAAAG-C 47
|||||||||||||||||||||||||| || | |||| ||||||||||||| |
Sbjct 1 ACGAAACGAAGAACAAACACTGAAACAAAAATCTTAGCAGAGAACAAAAATCCCAAAGCC 60
Query 48 TAGAAACCCTAATCCCAAACGAATCAATGGAGCGAGACGAAGAAGCGAGTGGACCGATGA 107
|| |||||||||||||| |||||||||||||||||||||| |||||||||||||||||||
Sbjct 61 TAAAAACCCTAATCCCAGACGAATCAATGGAGCGAGACGATGAAGCGAGTGGACCGATGA 120
Query 108 TGGAGATGTGCACTAACGGCGGCGAAGAGACGTCTAATCGAAGACCTATCATAAGTGGCG 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TGGAGATGTGCACTAACGGCGGCGAAGAGACGTCTAATCGAAGACCTATCATAAGTGGCG 180
Query 168 AACCGCTCGACATCGAGGCCTACGCGGCTCTCTACAAAGGTCGCACGAAGATCATGCGGC 227
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 181 AACCGCTCGACATCGAGGCTTACGCGGCTCTCTACAAAGGTCGCACGAAGATCATGCGGC 240
Query 228 TTCTCTTCATCGCTAACCACTGCGGAGGAAACCACGCGCTTCAGTTTGACGCGTTGAGGA 287
|||||||||||||||||||||||||||||||||||||| ||||| |||| ||||||||||
Sbjct 241 TTCTCTTCATCGCTAACCACTGCGGAGGAAACCACGCGGTTCAGCTTGAAGCGTTGAGGA 300
Query 288 TGGCTTACGATGAGATCAAAAAGGGTGAGAATACGCAGTTGTTCAGAGAAGTGGTCAATA 347
||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 301 TGGCTTACGATGAGATCAAAAAGGGTGAGAATACGCAGTTGTTTAGAGATGTGGTCAATA 360
Query 348 AGATTGGCAACAGGCTTGGGGAAAAGTATGGGATGGA-TCTTGCTTGGTGTGAGGCCGTC 406
|||||||| |||||||||||| |||||||||||||| || |||||||||||| ||||||
Sbjct 361 AGATTGGCGGCAGGCTTGGGGATAAGTATGGGATGGATTC-TGCTTGGTGTGAAGCCGTC 419
Query 407 GATCGTCGTGCTGAACAGAAGAAAGTAAAGCTGGAGAATGAGCTCAGTTCTTATCGGACA 466
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 420 GATCGTCGTGCTGAACAGAAGAAAGGAAAGCTGGAGAATGAGCTCAGTTCTTATCGGACA 479
Query 467 AATTTGATCAAGGAAAGCATCAGAATGGGTTACAATGACTTTGGAGATTTCTATTACGCA 526
||| ||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 480 AATCTGATCAAGGAAAGCATCAGAATGGGTTACAATGACTTTGGAGATTTCTACTATGCG 539
Query 527 TGTGGTATGCTCGGAGATGCTTTCAAGAACTATATCCGAACACGCGACTACTGCACTACG 586
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 540 TGTGGTATGCTCGGAGATGCTTTCAAGAACTATATCCGAACTCGCGACTACTGCACTACG 599
Query 587 ACAAAGCACATCATTCACATGTGTATGAATGCGATTCTTGTCAGCATCGAAATGGGTCAG 646
|| ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 600 ACGAAGCATATCATTCACATGTGTATGAATGCGATTCTTGTCAGCATTGAAATGGGTCAG 659
Query 647 TTTACTCATGTTACAAGCTATGTGAACAAGGCAGAGCAGAATCCTGAAACC-CTTGAACC 705
|||||||||||||||||||| ||||||||||||||||| ||||||| | || ||||| ||
Sbjct 660 TTTACTCATGTTACAAGCTACGTGAACAAGGCAGAGCAAAATCCTG-ATCCTCTTGACCC 718
Query 706 TATGGTTAATGCAAAACTGCGATGTGCATCTGGATTGGCTCATTTGGAGTTGAAGAAGTA 765
||| |||| ||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 719 TATTGTTATTGCAAAATTGCGATGTGCATCTGGATTGGCTCATTTGGAGCTGAAGAAGTA 778
Query 766 CAAGCTAGCTGCTCGTAAGTT-CTTAGATGTTAACCCAGAACTTGGAAATTCCTATAATG 824
||||||||||||||||||||| ||| |||||||| |||||||||||||||||||||||||
Sbjct 779 CAAGCTAGCTGCTCGTAAGTTCCTT-GATGTTAATCCAGAACTTGGAAATTCCTATAATG 837
Query 825 AAGTCATTGCTCCTCAAGATATTGCCACCTATGGTGGACTCTGTGCCCTGGCAAGCTTTG 884
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 838 AGGTCATTGCTCCTCAAGATATTGCCACCTATGGTGGACTCTGTGCCCTGGCAAGCTTTG 897
Query 885 ATCGATCAGAATTGAA-GCAAAAAGTCATTGACAATATCAACTTCCGGAATTTCTTGGAG 943
|||||||||||||||| || | |||||||||||||||||||||||||||||||||||
Sbjct 898 ATCGATCAGAATTGAAGGC----ATTCATTGACAATATCAACTTCCGGAATTTCTTGGAG 953
Query 944 CTAGTGCCTGATGTGAGGGAACTTATCAACGATTTCTATTCAAGCCGCTATGCTTCCTGC 1003
||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 954 CTAGTGCCTGAAGTGAGGGAACTTATCAACGATTTCTATTCAAGCCGTTATGCTTCCTGC 1013
Query 1004 CTGGAATATCTTGCAAGTCTCAAATCGAATCTGCTGCTGGACATCCATCTTCATGATCAC 1063
||||||||||| |||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 1014 CTGGAATATCTAGCAAGTCTCAAAGCGAATTTGCTGCTGGACATCCATCTTCATGATCAC 1073
Query 1064 GTTGACACACTATATGATCAGATAAGGAAGAAGGCACTGATCCAGTACACATTGCCATTT 1123
||||||||||| |||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 1074 GTTGACACACTCTATGATCAGATAAGGAAGAAGGCAGTGATCCAGTACACACTGCCATTT 1133
Query 1124 GTCTCTGTTGATTTGAGCAGGATGGCCGATGCATTCAAGACTAGCGTCTCTGGTCTAGAG 1183
|| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1134 GTGTCTGTTGATTTGAGCAGGATGGCTGATGCATTCAAGACTAGCGTCTCTGGTCTAGAG 1193
Query 1184 AAAGAACTTGAAGCCTTGATCACAGACAACCAGATTCAGGCAAGGATTGATTCACACAAC 1243
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1194 AAAGAACTTGAAGCCTTGATCACAGACAACCAGATTCAGGCGCGGATTGATTCACACAAC 1253
Query 1244 AAAATCCTCTATGCAAGACACGCGGATCAGAGGAATGCAACTTTCCAAAAGGTACTTCAG 1303
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1254 AAAATCCTCTACGCAAGACACGCGGATCAGAGGAATGCAACTTTCCAAAAGGTACTTCAG 1313
Query 1304 ATGGGAAACGAATTCGATAGAGATGTCAGGGCGATGCTGTTAAGAGCCAACCTCCTGAAA 1363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1314 ATGGGAAACGAATTCGATAGAGATGTCAGGGCGATGCTGTTAAGAGCCAACCTCCTGAAA 1373
Query 1364 CATGAGTATCATGCCAGATCGGCAAGGAAACTTTGA--T-GA---CATCTGCTTT-GCTA 1416
||||||||||||||||||||| |||| ||||||||| | || |||| |||| ||||
Sbjct 1374 CATGAGTATCATGCCAGATCGTCAAGAAAACTTTGAAATTGATGACATCAACTTTTGCTA 1433
Query 1417 AACTGAGAGG-AATATTCAAGGGTGTTTTTTCAAGATTCGAACCAAACGAGAAATTGGGC 1475
|||||||||| ||| |||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1434 AACTGAGAGGTAATTTTCAAGGGTGTTTTTTCAAGATTCGAACAAAACGAGAAATTGGGC 1493
Query 1476 AAGATTACTTTTTTGTAAGAACCAA--GTGTTTCAATGAGTCGATGACATTTAGAGTAAG 1533
||||||||||||||||||||||||| ||||||| |||||||| |||||||| |||||||
Sbjct 1494 AAGATTACTTTTTTGTAAGAACCAATAGTGTTTCTATGAGTCGGTGACATTTTGAGTAAG 1553
Query 1534 TAAAGGTTTTATTCTAAGATGGACAGTCCATTATTAATCAACTATTGAATGATATTGCCT 1593
|||||||||||||| |||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 1554 TAAAGGTTTTATTCAAAGATGGACAGTCCATTATTAATCAACTTTTGAACGATATTGCCT 1613
Query 1594 TTTAAATGAGTCTTAGGTAGCATCGCAATAACTCCATGTTTACTCAAAACTCACAAACCA 1653
|||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 1614 TTTAAATGAGTCTTAGGTAGCATCGCAATAACTCCATGCTTACTTAAAACTCACAAACCA 1673
Query 1654 TGAAGTTAAGAATCCGCCAAATTTGGAAGATGGGCCAACTC 1694
|||||||||||||||||||||||||||||||||||||||||
Sbjct 1674 TGAAGTTAAGAATCCGCCAAATTTGGAAGATGGGCCAACTC 1714
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69743238595
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5