BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G61150.1
Length=2836
Score E
Sequences producing significant alignments: (Bits) Value
Ahg324546 jgi|Araly1|324546|fgenesh1_pm.C_scaffold_5002090 3675 0.0
> Ahg324546 jgi|Araly1|324546|fgenesh1_pm.C_scaffold_5002090
Length=2436
Score = 3675 bits (1990), Expect = 0.0
Identities = 2302/2449 (94%), Gaps = 35/2449 (1%)
Strand=Plus/Plus
Query 162 ATGAATTTCAACGGTTTTCTCGACGACGG-T--GCTGGAGCCTCAAAGCTACTCTCTGAT 218
||||||||||||||||||||||||||||| | | |||||||||||||||||||| |||
Sbjct 1 ATGAATTTCAACGGTTTTCTCGACGACGGTTCCCCCGGAGCCTCAAAGCTACTCTCCGAT 60
Query 219 GCT-CCGT---ACAACAACCACTTCTCTTTCTCCGCCGTAG--A-CACCATGCTCGGAAG 271
| | |||| |||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct 61 G-TACCGTACAACAACAACCACTTCTCTTTCTCCGCCGTAGACACCACCATGCTCGGAAC 119
Query 272 CGCCGCCATTGctccttctcagtctcttcctttctcttcttcaggcctctctctcGGACT 331
| |||||||||||||| |||| |||| |||||||||||||||||||||||| ||||||||
Sbjct 120 CACCGCCATTGCTCCTCCTCATTCTCGTCCTTTCTCTTCTTCAGGCCTCTCCCTCGGACT 179
Query 332 CCAAACAAATGGAGAAATGAGTAGAAACGGAGAGATTATGGAGTCAAACGTAAGTCGTAA 391
|||||||||||||||||||||||||||| |||||||| | ||||| || |||| ||||||
Sbjct 180 CCAAACAAATGGAGAAATGAGTAGAAACAGAGAGATTTTCGAGTCGAATGTAACTCGTAA 239
Query 392 GAGTAGTAGAGGAGAAGATGTAGAAAGCAGATCTGAAAGTGATAACGCTGAAGCTGTCTC 451
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 AAGTAGTAGAGGAGAAGATGTAGAAAGCAGATCTGAAAGTGATAACGCTGAAGCTGTCTC 299
Query 452 CGGTGACGATTTAGATACCTCCGATAGACCTTTAAAGAAGAAGAAACGTTACCATCGTCA 511
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 300 CGGTGACGATTTAGATACTTCCGATAGACCTTTAAAGAAGAAGAAACGTTACCATCGCCA 359
Query 512 CACTCCTAAACAAATTCAAGACCTCGAATCGGTTTTTAAAGAGTGTGCACATCCAGACGA 571
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 CACTCCTAAACAAATTCAAGACCTCGAATCGGTTTTTAAAGAGTGTGCACATCCAGACGA 419
Query 572 GAAGCAACGTCTTGATCTTAGCCGTCGACTTAACTTAGATCCTCGTCAAGTCAAGTTCTG 631
||||||||||||||||| |||||||||||||| |||||||||||||||||||| |||||
Sbjct 420 AAAGCAACGTCTTGATCTCAGCCGTCGACTTAATTTAGATCCTCGTCAAGTCAAATTCTG 479
Query 632 GTTCCAGAATCGTCGTACTCAGATGAAGACTCAAATCGAACGACATGAGAATGCTTTGTT 691
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 GTTCCAGAATCGCCGTACTCAGATGAAGACTCAAATCGAACGACATGAGAATGCTTTGTT 539
Query 692 GAGGCAAGAGAACGATAAGCTTCGAGCTGAGAATATGTCTGTACGCGAAGCTATGAGAAA 751
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 GAGGCAAGAGAACGATAAGCTTCGAGCTGAGAATATGTCTGTACGCGAAGCTATGAGAAA 599
Query 752 CCCTATGTGTGGTAATTGCGGCGGACCTGCCGTTATCGGTGAGATCTCAATGGAAGAGCA 811
||||||||||||||| |||||||||||||| |||||||| |||||||| |||||||| ||
Sbjct 600 CCCTATGTGTGGTAACTGCGGCGGACCTGCTGTTATCGGCGAGATCTCCATGGAAGAACA 659
Query 812 ACATCTGAGAATTGAAAACTCTCGTCTCAAAGATGAGTTAGACCGAGTCTGTGCCTTAAC 871
|||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 ACATCTTCGAATCGAAAACTCTCGTCTCAAAGATGAGTTAGACCGAGTCTGTGCCTTAAC 719
Query 872 CGGTAAGTTTCTTGGCCGGTCTAATGGTTCACATCATATACCGGACTCAGCACTTGTTCT 931
|||||| |||||||||||||| || ||||| |||||||||||||||||||||||||||||
Sbjct 720 CGGTAAATTTCTTGGCCGGTCCAACGGTTCTCATCATATACCGGACTCAGCACTTGTTCT 779
Query 932 CGGCGTTGGTGTTGGTTCTGGTGGATGTAATGTTGGTGGTGGTTTCACTCTCTCTTCTCC 991
||||||||||| ||| ||| | | | ||||||||||||||||||||||||||||||
Sbjct 780 CGGCGTTGGTGGTGG--CTG-T--A---A-TGTTGGTGGTGGTTTCACTCTCTCTTCTCC 830
Query 992 -GCTGTTGCCTCAAGCTTCTCCTAGATTTGAGATTTCTAATGGAACCGGTTCTGGTTTGG 1050
| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 831 TG-TGTTGCCTCAAGCTTCTCCAAGATTTGAGATTTCTAATGGAACCGGTTCTGGTTTGG 889
Query 1051 TGGCTACGGTTAACCGTCAACAACCGGTTAGTGTTAGTGATTTTGATCAGAGATCGAGGT 1110
||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||
Sbjct 890 TGGCTACGGTTAACCGTCAACCACCGGTTGGTGTTAGTGATTTTGATCAGAGATCGAGGT 949
Query 1111 ATTTGGATTTAGCTCTTGCGGCTATGGATGAGCTTGTGAAGATGGCTCAGACACGTGAGC 1170
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 950 ATTTGGATTTAGCTCTTGCGGCTATGGATGAGCTTGTGAAGATGGCTCAGACACGTGACC 1009
Query 1171 CGCTCTGGGTTCGAAGCTCGGATTCTGGTTTTGAAGTGCTGAACCAGGAAGAGTACGACA 1230
||||||||||| | ||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 1010 CGCTCTGGGTTAGGAGCTCGGATACTGGTATTGAAGTGCTGAACCAGGAAGAGTACGACA 1069
Query 1231 CAAGTTTCTCTCGGTGTGTTGGACCAAAACAAGATGGGTTTGTCTCAGAAGCTTCTAAAG 1290
|||||||| |||| |||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1070 CAAGTTTCACTCGATGTGTTGGACCAAAACCAGATGGGTTTGTCTCAGAAGCTTCTAAAG 1129
Query 1291 AAGCTGGAACTGTTATCATCAATAGCTTAGCGCTCGTTGAAACCTTAATGGACTCGGAAC 1350
||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 1130 AAGCTGGAACTGTTATCATCAATAGCTTAGCCCTCGTTGAAACCTTGATGGACTCGGAAC 1189
Query 1351 GGTGGGCGGAAATGTTTCCTAGTATGGTCTCAAGAACTTCAACCACAGAGATTATCTCTA 1410
| ||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||
Sbjct 1190 GATGGGCGGAAATGTTTCCAAGTATGATCTCAAGAACTTCAACCACAGAGATTATCTCTA 1249
Query 1411 GTGGCATGGGAGGG-C--GAAATGGTGCACTTCACCTGATGCACGCAGAGCTTCAACTGC 1467
|||||||||||||| | |||||||||||||||||||||||||||||||||||||| |||
Sbjct 1250 GTGGCATGGGAGGGTCACGAAATGGTGCACTTCACCTGATGCACGCAGAGCTTCAATTGC 1309
Query 1468 TGTCTCCACTCGTGCCGGTTAGACAAGTGTCGTTCTTGCGGTTCTGTAAACAGCACGCGG 1527
|||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| |
Sbjct 1310 TGTCTCCACTCGTGCCTGTTCGACAAGTGTCGTTCTTGCGGTTCTGTAAACAGCACGCAG 1369
Query 1528 AAGGTGTTTGGGCAGTCGTGGATGTCTCAATTGATTCCATTAGAGAAGGTTCTTCTTCGA 1587
||||||||||||| || || |||||||| |||||||||||||||||||| |||||||| |
Sbjct 1370 AAGGTGTTTGGGCGGTGGTCGATGTCTCCATTGATTCCATTAGAGAAGGATCTTCTTCCA 1429
Query 1588 GCTGTAGAAGATTACCATCCGGTTGCCTCGTACAAGACATGGCCAATGGCTACTCAAAGG 1647
|||||||||| ||||| |||||||||||||||||||||||||||||||||| ||| ||||
Sbjct 1430 GCTGTAGAAGGTTACCGTCCGGTTGCCTCGTACAAGACATGGCCAATGGCTGCTCTAAGG 1489
Query 1648 TAACATGGATCGAGCACACGGAGTATGACGAAAACCACATCCACCGTTTATACCGCCCAT 1707
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1490 TAACATGGATCGAGCACACGGAGTATGACGAAAACCGCATCCACCGTTTATACCGCCCAT 1549
Query 1708 TACTCAGGTGCGGTCTAGCGTTTGGTGCGCATCGATGGATGGCTGCATTACAACGTCAAT 1767
||||||| || || |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1550 TACTCAGCTGTGGACTAGCGTTTGGTGCGCATCGATGGATGGCTGCGTTACAACGTCAAT 1609
Query 1768 GCGAATGCCTCACGATTCTCATGTCCTCCACTGTTTCCACTTCCACTAATCCATCCCCTA 1827
||||||||||||| |||||||||||||||||||||||| ||||| |||| ||| ||||||
Sbjct 1610 GCGAATGCCTCACCATTCTCATGTCCTCCACTGTTTCCCCTTCCCCTAACCCAACCCCTA 1669
Query 1828 TAAACTGCAATGGGAGAAAAAGCATGCTAAAGCTAGCGAAGAGGATGACTGATAATTTCT 1887
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1670 TAAACTGCAATGGGAGAAAAAGCATGCTAAAGCTAGCGAAGAGGATGACTGATAATTTCT 1729
Query 1888 GTGGAGGG-GTTTGTGCTTCGTCGTTACAGAAATGGAGCAAACTCAACGTTGGCAACGTC 1946
| || ||| ||||||||||| |||||||| ||||||||||||||||||||||| ||||||
Sbjct 1730 GCGG-GGGAGTTTGTGCTTCTTCGTTACAAAAATGGAGCAAACTCAACGTTGGTAACGTC 1788
Query 1947 GACGAAGACGTTAGGATAATGACTAGGAAGAGTGTAAACAATCCTGGCGAGCCGCCTGGG 2006
||||| |||||| ||||||||||||||||||| ||||||||||| ||||| ||||||||
Sbjct 1789 GACGAGGACGTTCGGATAATGACTAGGAAGAGCGTAAACAATCCCGGCGAACCGCCTGGT 1848
Query 2007 ATAATTCTAAATGCGGCGACGTCAGTTTGGATGCCGGTATCTCCGA-GGCGGTTGTTTGA 2065
|| |||||||| || ||||||||||||||||||||| | ||||| | || ||||||||||
Sbjct 1849 ATCATTCTAAACGCCGCGACGTCAGTTTGGATGCCGATTTCTCC-ACGGAGGTTGTTTGA 1907
Query 2066 CTTCCTTGGAAACGAACGGCTTAGATCGGAATGGGATATCTTATCCAACGGTGGACCAAT 2125
|||||||||||| |||||||| |||||||||||||||||||||||||||||||| || ||
Sbjct 1908 CTTCCTTGGAAATGAACGGCTGAGATCGGAATGGGATATCTTATCCAACGGTGGGCCTAT 1967
Query 2126 GAAAGAGATGGCCCATATAGCTAAAGGCCATGACCGTTCCAACTCCGTCTCCCTCCTCCG 2185
||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||
Sbjct 1968 GAAAGAGATGGCCCATATAGCTAAAGGCCATGACCATTCCAACTCTGTCTCCCTCCTCCG 2027
Query 2186 TGCCAGCGCGATAAATGCGAATCAGAGTAGTATGCTGATATTACAAGAGACAAGCATAGA 2245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2028 TGCCAGCGCGATAAATGCGAATCAGAGTAGTATGCTGATATTACAAGAGACAAGCATAGA 2087
Query 2246 CGCTGCAGGAGCGGTTGTCGTGTACGCGCCTGTTGATATCCCAGCAATGCAAGCTGTGAT 2305
||||||||||||| |||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 2088 CGCTGCAGGAGCGCTTGTTGTGTACGCGCCTGTGGATATCCCAGCAATGCAAGCTGTGAT 2147
Query 2306 GAACGGTGGAGATTCTGCTTACGTGGCACTCCTTCCTTCAGGATTCGCCATTCTCCCTAA 2365
|||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 2148 GAACGGTGGAGATTCTGCTTACGTGGCACTGCTTCCCTCAGGATTCGCCATTCTCCCTAA 2207
Query 2366 CGGTCAGGCTGGTACGCAACGCTGCGCCGCAGAGGAACGTAACAGTAT---T---GGTAA 2419
|| |||||| |||| |||||||||||||||||||||||||||| ||| | |||||
Sbjct 2208 CGCTCAGGCGGGTATGCAACGCTGCGCCGCAGAGGAACGTAACGGTAACGGTAACGGTAA 2267
Query 2420 CGGTGGGTGCATGGAGGAAGGAGGGTCGTTACTAACGGTGGCGTTTCAGATACTGGTGAA 2479
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 2268 CGGTGGGTGCATGGAGGAAGGAGGGTCGTTACTAACGGTGGCGTTTCAGATTCTGGTGAA 2327
Query 2480 TAGTTTGCCTACGGCTAAGCTAACGGTGGAATCTGTGGAGACGGTTAATAATTTGATATC 2539
||||||||||||||||||||| |||||||||||||| ||||||||||||||| |||||||
Sbjct 2328 TAGTTTGCCTACGGCTAAGCTCACGGTGGAATCTGTAGAGACGGTTAATAATCTGATATC 2387
Query 2540 GTGCACCGTTCAGAAGATTAAAGCTGCTCTTCATTGTGATAGCACCTGA 2588
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2388 GTGCACCGTTCAGAAGATTAAAGCTGCTCTTCATTGTGATAGCACCTGA 2436
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 107033588450
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5