BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G61160.2
Length=1811
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486587 jgi|Araly1|486587|fgenesh2_kg.5__2579__AT3G61160.1 2824 0.0
Ahg486589 jgi|Araly1|486589|fgenesh2_kg.5__2581__AT3G61170.1 207 2e-52
> Ahg486587 jgi|Araly1|486587|fgenesh2_kg.5__2579__AT3G61160.1
Length=1850
Score = 2824 bits (1529), Expect = 0.0
Identities = 1734/1827 (95%), Gaps = 38/1827 (2%)
Strand=Plus/Plus
Query 1 GATATTTCTATAAATATGTTTTTGTATATATACACAGAGAGTTTTGATTAAGGAAGAAAA 60
|||||||||||||||||||||| ||||||||||| | ||||||| |||||||||||||||
Sbjct 46 GATATTTCTATAAATATGTTTTCGTATATATACA-A-AGAGTTTAGATTAAGGAAGAAAA 103
Query 61 ATCCTTAGATCAttt-tttttttGTTATCTTTGTTTCGTTTTTCTGGTAGAAGAGAGAAG 119
||||||||||| ||| |||| ||||| ||||||||||| |||||||| ||||||| ||||
Sbjct 104 ATCCTTAGATC-TTTATTTTCTTGTTGTCTTTGTTTCG-TTTTCTGGCAGAAGAGGGAAG 161
Query 120 AAGGAGAGACG-AATTGGCAGCTAAGCGA-t-tctctctctttctctctttctcttctc- 175
||||||||| | |||||||||| |||||| | |||||||||||||||||||||||||||
Sbjct 162 AAGGAGAGA-GAAATTGGCAGCAAAGCGATTCTCTCTCTCTTTCTCTCTTTCTCTTCTCG 220
Query 176 -----G-TGTAATCTTTTGGTGTTCTTGAAA-CC--ACtttttttttt-GTTAATTCCTC 225
| ||| |||||||||| ||||||||| || |||||||||| |||||||||||
Sbjct 221 TGAAAGCTGTTATCTTTTGGTTTTCTTGAAACCCGTTTTTTTTTTTTTAGTTAATTCCTC 280
Query 226 TGTTTCCTTGGAATTGTTTTCTGCTTTTTTAAGAAGaaaaaaaCGATGAATGTGGTGCGG 285
||||| ||||||| ||||||||| ||| ||| ||||||||||||||||||||||||
Sbjct 281 TGTTTTCTTGGAA-AGTTTTCTGC---TTT--GAA-AAAAAAACGATGAATGTGGTGCGG 333
Query 286 AGATTAACGAGTATTGCCTCTGGACGTAATTTCGTTTCTTCTGATAACGTAGGAGAAACT 345
|||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 334 AGATTAACGAGTATCGCCTCTGGACGCAATTTCGTTTCTTCTGATAACGTAGGAGAAACT 393
Query 346 GAGACGCCGAGATCAAAGCCTAACCAGAATCGTGAAGAAACAGAGTCTACGGAAACTACG 405
|||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 394 GAGAAGCCGAGATCAAAGCCTAATCAGAATCGTGAAGAAACAGAGTCTACGGAAACTACG 453
Query 406 TCGTACGAGAAAGATTCTGTCTCTTCCTCAGAGAACTCTGATCATTTACCAAAGGAAATC 465
|||||||||||||||||||||||| ||||||||||||||||||||||||| |
Sbjct 454 TCGTACGAGAAAGATTCTGTCTCTACCTCAGAGAACTCTGATCATTTACC---------C 504
Query 466 CGTGAGGTGGG-ACTTGGAGATGACAAGGATATGGACTGTGGAATCATCAAGGGAAATGG 524
|||||| |||| || ||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 505 CGTGAGATGGGAAC-TGGAGATGATAAGGATATGGATTGTGGAATCATCAAGGGAAATGG 563
Query 525 AACAGAATCTGGACGGATTATTACCACCAAAAAGAAGGGTTTGAATGATCAAAAAGACAA 584
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 564 AACAGAATCTGGACGGATTATTACCACCAAGAAGAAGGGTTTGAATGATCAAAAAGACAA 623
Query 585 GACAATCTCTTACAGAGCTGAACATGTAATTGGCACTGGCTCATTCGGTGTTGTCTTTCA 644
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 624 GACAATCTCGTACAGAGCTGAACATGTAATTGGCACTGGCTCATTCGGTGTTGTCTTTCA 683
Query 645 GGCTAAGTGCTTAGAGACGGAAGAAAAAGTAGCAATAAAGAAAGTGTTACAGGACAAGAG 704
|||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 684 GGCTAAGTGCTTAGAGACAGAAGAAAAAGTAGCAATCAAGAAAGTGTTACAGGACAAGAG 743
Query 705 ATACAAAAACAGAGAACTTCAGATCATGCGAATGCTTGATCATCCTAATGTCGTTGAGCT 764
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 744 ATACAAAAACAGAGAACTTCAGATCATGCGAATGCTTGATCATCCTAATGTCGTTGAGCT 803
Query 765 CAAGCATTCTTTCTTTTCCACGACTGAGAAAGACGAGCTTTATCTTAACCTTGTTCTTGA 824
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 804 CAAGCATTCTTTCTTTTCCACGACTGAGAAAGACGAGCTTTATCTTAACCTTGTTCTCGA 863
Query 825 GTATGTACCCGAGACTATTTACCGCGCTTCCAGATCTTACACCAAGATGAATCAGCATAT 884
|||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 864 GTATGTTCCCGAGACTATTTACCGCGCTTCCAGATCTTACACCAAGATGAATCATCATAT 923
Query 885 GCCTTTGATTTATATTCAGCTCTACACCTATCAGATTTGCCGTGCTATGAATTATCTGCA 944
|||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 924 GCCTATGATTTATATTCAGCTCTATACCTATCAGATTTGCCGTGCTATGAATTATCTGCA 983
Query 945 TCAAGTGGTTGGAGTGTGTCACCGTGACATTAAGCCGCAGAATCTGTTGGTCAATAATGT 1004
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 984 TCAAGTGGTTGGAGTGTGTCACCGTGACATTAAGCCGCAGAATCTATTGGTCAATAATGT 1043
Query 1005 TACGCATGAAGTAAAGATATGCGATTTTGGGAGCGCCAAAATGCTGATTCCAGGAGAACC 1064
||||||||| ||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 1044 TACGCATGAGGTAAAGATATGCGATTTCGGGAGCGCGAAAATGCTGATTCCAGGAGAACC 1103
Query 1065 AAATATATCTTACATATGCTCAAGGTATTACAGAGCTCCTGAACTCATATTTGGAGCAAC 1124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1104 AAATATATCTTACATATGCTCAAGGTATTACAGAGCTCCTGAACTCATATTTGGAGCAAC 1163
Query 1125 CGAATACACAAGTGCGATCGATATGTGGTCTGTAGGTTGTGTCATGGCTGAGCTTTTTCT 1184
||| |||||||| |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1164 CGAGTACACAAGCGCGATCGATATGTGGTCTGTCGGTTGTGTCATGGCTGAGCTTTTTCT 1223
Query 1185 TGGACATCCTCTATTCCCTGGAGAAACCAGTGTTGATCAATTGGTGGAGATCATTAAGAT 1244
||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||
Sbjct 1224 TGGACATCCTCTATTCCCTGGAGAAACAAGTGTTGATCAACTGGTGGAGATCATTAAGAT 1283
Query 1245 TTTAGGGACACCAGCAAGAGAAGAGATAAAGAACATGAATCCTCGTTACAATGATTTTAA 1304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1284 TTTAGGGACACCAGCAAGAGAAGAGATAAAGAACATGAATCCTCGTTACAATGATTTTAA 1343
Query 1305 GTTCCCTCAGATCAAAGCTCAGCCGTGGCACAAGATTTTCCGGAGACAGGTATCTCCAGA 1364
|||||||||||| |||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 1344 GTTCCCTCAGATAAAAGCTCAACCATGGCACAAGATTTTCCGGAGACAGGTATCTCCAGA 1403
Query 1365 AGCAATGGATCTTGCCTCTAGATTGCTCCAGTATTCACCAAACCTGAGATGCACAGCGCT 1424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1404 AGCAATGGATCTTGCCTCTAGATTGCTCCAGTATTCACCAAACCTGAGATGCACAGCGCT 1463
Query 1425 TGAAGCATGTGCACACCCATTCTTCGATGATCTGAGAGACCCGAGAGCATCCTTGCCTAA 1484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1464 TGAAGCATGTGCACACCCATTCTTCGATGATCTGAGAGACCCGAGAGCATCCTTGCCTAA 1523
Query 1485 TGGAAGAGCACTTCCTCCATTGTTTGATTTCACAGCTCAAGAACTTGCTGGGGCATCTGT 1544
||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 1524 TGGAAGAGCACTTCCTCCATTGTTTGATTTCACAGCTCAAGAACTCGCTGGTGCATCTGT 1583
Query 1545 TGAACTGCGTCATCGCTTAATACCTGAGCATGCAAGGAAATGACCATTTGGGTTAATGGC 1604
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1584 TGAACTGCGTCATCGCTTAATACCCGAGCATGCAAGGAAATGACCATTTGGGTTAATGGC 1643
Query 1605 TGCTTCTCTACGCAGATGTTGATATATAAATCtttttttATTTTGAGAGTTTCTTGTTCA 1664
|||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||| |
Sbjct 1644 TGCTTCTCTACGCAGATGTTGATATATAAAGCTTTTTTGATTTTGAGAGTTTCTTGTTGA 1703
Query 1665 CAAGTATAGCATTGTGCTGGTTATGAACCCTCACTGACCTCTGCAACCACATCGACTAGC 1724
|| |||||||||||| |||||||||||||||||||||||||||||||||||| | |||||
Sbjct 1704 CACGTATAGCATTGTTCTGGTTATGAACCCTCACTGACCTCTGCAACCACATGGCCTAGC 1763
Query 1725 AGTTTGAAAGTGTATAATTGTAAGTTTGTAACTTTGTAGCTTTCATTGTTGCAGACAGAA 1784
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 1764 AGTTTGAAAGTGTATAATTGTAAGTTTGTAACTTTGTAGCTTCCACTGTTGCAGACAGAA 1823
Query 1785 ATGCAGAATTTTCCGAGTTTTCCTTCT 1811
||||||||||||||||||||| |||||
Sbjct 1824 ATGCAGAATTTTCCGAGTTTTTCTTCT 1850
> Ahg486589 jgi|Araly1|486589|fgenesh2_kg.5__2581__AT3G61170.1
Length=2304
Score = 207 bits (112), Expect = 2e-52
Identities = 122/127 (96%), Gaps = 0/127 (0%)
Strand=Plus/Minus
Query 1685 TTATGAACCCTCACTGACCTCTGCAACCACATCGACTAGCAGTTTGAAAGTGTATAATTG 1744
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 2304 TTATGAACCCTCACTGACCTCTGCAACCACATGGACTAGCAGTTTGAAAGTGTATAATTG 2245
Query 1745 TAAGTTTGTAACTTTGTAGCTTTCATTGTTGCAGACAGAAATGCAGAATTTTCCGAGTTT 1804
|||||||||||||||||||||| || |||||||||||||||||||||||||||||| |||
Sbjct 2244 TAAGTTTGTAACTTTGTAGCTTCCACTGTTGCAGACAGAAATGCAGAATTTTCCGATTTT 2185
Query 1805 TCCTTCT 1811
| |||||
Sbjct 2184 TTCTTCT 2178
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67991087325
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5