BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G61172.1

Length=225
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg486590 jgi|Araly1|486590|fgenesh2_kg.5__2582__AT3G61172.1         300    3e-81


> Ahg486590 jgi|Araly1|486590|fgenesh2_kg.5__2582__AT3G61172.1
Length=225

 Score =  300 bits (162),  Expect = 3e-81
 Identities = 206/227 (91%), Gaps = 4/227 (2%)
 Strand=Plus/Plus

Query  1    ATGAGTAAACTCACCAATGTTGTCATC-TTCATTGTCTTCTTCCTAGGGATGATGGCGAA  59
            |||| ||||||||||| ||||| |||| ||| ||||||||||| ||||||||||||||||
Sbjct  1    ATGACTAAACTCACCATTGTTGCCATCTTTC-TTGTCTTCTTCTTAGGGATGATGGCGAA  59

Query  60   AGAAACGCAAGGACAACATATATGTCATCAGATTCTGTTAAACAACAATTGTGATGGAGC  119
            |||||| ||||||||||||||||||||||||||||| ||| | |||||||||||||||||
Sbjct  60   AGAAACACAAGGACAACATATATGTCATCAGATTCTATTAGATAACAATTGTGATGGAGC  119

Query  120  CACATGCACA-AGTCTCTGTGACAAGCAGTTGCAAGGAACTGGCCAGTGCTATAAAACCG  178
            |||||||||  | ||| ||||||||| |||||||||||||||||||||| || | |||||
Sbjct  120  CACATGCACCGA-TCTGTGTGACAAGAAGTTGCAAGGAACTGGCCAGTGTTACAGAACCG  178

Query  179  TTGACAAAAGATTTATTTGCCTCTGCAATTATCTTTGCAGAACTTGA  225
            |||||| ||||||||| ||||||||||||||| ||||||||||||||
Sbjct  179  TTGACAGAAGATTTATCTGCCTCTGCAATTATATTTGCAGAACTTGA  225



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 7714028722


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5