BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G61177.1

Length=228
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg486591 jgi|Araly1|486591|fgenesh2_kg.5__2583__AT3G61177.1         322    7e-88


> Ahg486591 jgi|Araly1|486591|fgenesh2_kg.5__2583__AT3G61177.1
Length=228

 Score =  322 bits (174),  Expect = 7e-88
 Identities = 213/231 (92%), Gaps = 6/231 (3%)
 Strand=Plus/Plus

Query  1    ATGGCTAAATCCACCA-TATTCGCTATTTTCATGATCGTCTTCGTTCTAGGGATGGTAAC  59
            |||||||||||||||| | || |||||||| ||||||||| |||||||||||||||||||
Sbjct  1    ATGGCTAAATCCACCATTCTT-GCTATTTTGATGATCGTCCTCGTTCTAGGGATGGTAAC  59

Query  60   GAAAGAGACGA-AAGGACAAGAAATGTGTCGTGATCTTTTAATGAGAGCTAAAAACTGTG  118
            ||||||||| | |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct  60   GAAAGAGAC-ACAAGGACAAGAAATGTGTCGTGATCTTTTAATGAGAGCTCAAAACTGTG  118

Query  119  ACGATAGCACTTGTGCTACTCTGTGTAAGCAAAAATGGAAAGGAAATGGATCGTGCTTCC  178
            | | | |||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct  119  ATGCTGGCACTTGTGCCACTCTGTGTAAGCAAAAATGGAAAGGAAATGGATCGTGCTTCC  178

Query  179  CAAACGTAT-ATAGAAAAAGCTGCCTCTGCACATTTCCTTGCAAAACTTGA  228
            ||||| | | | |  ||||||||||||||||||||||||||||||||||||
Sbjct  179  CAAACTT-TCAAATCAAAAGCTGCCTCTGCACATTTCCTTGCAAAACTTGA  228



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 7828593505


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5