BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G61180.1
Length=1631
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486593 jgi|Araly1|486593|fgenesh2_kg.5__2585__AT3G61180.1 2412 0.0
> Ahg486593 jgi|Araly1|486593|fgenesh2_kg.5__2585__AT3G61180.1
Length=1617
Score = 2412 bits (1306), Expect = 0.0
Identities = 1531/1637 (94%), Gaps = 26/1637 (2%)
Strand=Plus/Plus
Query 1 CTCGAAACCTAGAATCATCCACCCCGCAAAGTCGACAGATTTCCAGCGAATTCAAACCCG 60
||| ||||||||||||||||| |||||||||||| |||||||||||||||||||||||||
Sbjct 1 CTCAAAACCTAGAATCATCCA-CCCGCAAAGTCGGCAGATTTCCAGCGAATTCAAACCCG 59
Query 61 ATCCATCGAGATTCTGGATCAACCCGATTACCCAAGATCCAATCTTTCTAATTGATGAAT 120
| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 60 ACCCATCGAGATTCTGGATCAACCCGATTACCCAAGATCCAATCTTTCTATTTGATGAAT 119
Query 121 CAATCGATCCCTTCTACCGTATCTTCTTCTCCGACGACTGATACGATGGACGCTTCGCCG 180
||||||||||||| |||||| |||||||||||| ||| ||||||||||||| |||||||
Sbjct 120 CAATCGATCCCTTTTACCGTCTCTTCTTCTCCGGGGACGGATACGATGGACGTTTCGCCG 179
Query 181 CTTCTTGGCCGGAACAGACGTAACCGCCCACGGTCCTCTCAGCCGATTCGTGGCGCGGCG 240
|||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||
Sbjct 180 CTTCTTGGCCGGAACAGACGTAACCGCCCACGGTCCTCACAGCCGCTTCGTGGCGCGGCG 239
Query 241 TCGAGACTTCTCCGCCGTGCTAGCAACCGCCGGATGATGCTCCGTGAGCCCTCCGTTCGA 300
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||
Sbjct 240 TCGAGACTTCTCCGCCGTGCTAGCAACCGCCGGATGATGCTCCGTGAGCCATCCGTTAGA 299
Query 301 GTCCGTGAGGTGGCGGCTGAGCAGCTTGAGGAACGGCAGAGTCAATGGGCTTACTCTAAA 360
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 300 GTCCGTGAGGTGGCGGCTGAGCAGCTTGAGGAACGGCAGAGTCAATGGGCTTACTCGAAA 359
Query 361 CCCATTATAGTTCTCGATATACTTTGGAATTTCCTATTTGTGATTGTTTCAATCGCGATT 420
|||||||| |||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct 360 CCCATTATTGTTCTCGATATACTTTGGAATTTCGTCTTTGTGATTGTTTCAATCGCGATT 419
Query 421 CTAGGGTTTAGTTCTGATGAAGATCCTGATGTTCCTCTTAGGTTGTGGATCATTGGGTAT 480
||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 420 CTAGGGTTTAGTTCTGAAGAAGATCCTGATGTTCCTCTTAGGTTGTGGATTATTGGGTAT 479
Query 481 AATGTTCAGTGTTTGTTTCATGTTGGATGTGTCATTGCTGAGTATAAACGTCGCCGTGTT 540
||| ||||||||||| |||||||||| ||||| |||||||||||||||||||||||||
Sbjct 480 AATTTTCAGTGTTTGCTTCATGTTGGTTGTGTAATTGCTGAGTATAAACGTCGCCGTGAA 539
Query 541 GCTAATTCTCCTCCTCCTAGTGGTGAAGATTCCTCCAATCACGAGTCTCTTAGCGGAAGT 600
||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 540 GCTAATTCTCCTCCT---AGTGGTGAAGATTCCTCCAATCACGAATCTCTTAGCGGAAGT 596
Query 601 GAAGATGAATCTGATGGCTATAGCATTAACAACACTGATGATGATGACCATGGAACTAGT 660
||||| |||||||||||||||||||||||| || |||||||||| |||||||||||||
Sbjct 597 GAAGACGAATCTGATGGCTATAGCATTAACGACGCTGATGATGA---CCATGGAACTAGT 653
Query 661 TTCACTAAGCACCTTGAATCTGCGAATACCATGTTCTCTTTTGTGTGGTGGATCATCGGG 720
||||| ||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 654 TTCACCAAGCACCTTGAATCTGCGAATACTATGTTCTCTTTTGTCTGGTGGATCATCGGG 713
Query 721 TTTTACTGGGTGACGGCTGATACCGAGGCACTAGCTCAATCTTCGCCACAACTCTACTGG 780
||||||||||| |||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 714 TTTTACTGGGTCACGGCTGATACCGAGGCACTAGCTCAGTCTTCGCCTCAACTCTACTGG 773
Query 781 CTCTGTGTTGCATTCCTTGCGTTTGATGTTATGTTTGTTGTCATTTGCGTAGCGGTTGCT 840
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 774 CTCTGTGTTGCATTCCTTGCGTTTGATGTTATGTTTGTTGTCATTTGCGTTGCGGTTGCT 833
Query 841 AGTCTTATTGGTATTGCTGTTTGTTGCTGTTTACCTTGCATCATTGCGATCTTGTACGCA 900
||||| ||||||||||||||||| |||||||||||||||||||| || ||||||||||||
Sbjct 834 AGTCTGATTGGTATTGCTGTTTGCTGCTGTTTACCTTGCATCATCGCAATCTTGTACGCA 893
Query 901 TTAGCAGATCAGGAAGGTGCACCGGATGAAGAGATAGAGAGGCTTTTAAAATTCAAGTTT 960
||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 894 TTAGCAGATCAGGAAGGTGCACCCGATGAAGAGATAGAAAGGCTTTTAAAATTCAAGTTC 953
Query 961 CTCACAGTAAAGAATTCTGAGAAAGTGAATGGCGAAATACGGGAAACTCAAGGAGGGATA 1020
||| |||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 954 CTCGTAGTAAAGAATTCCGAGAAAGTGAATGGCGAAATCCGGGAAACTCAAGGAGGGATA 1013
Query 1021 ATGACTGGATTAGATACCGAGTCTCAAACCGAACGTATGTTATTAAGCGAAGATGCTGAA 1080
||| ||||||||| |||||||||||||||||||||| |||||| ||||||||||||||||
Sbjct 1014 ATGGCTGGATTAGGTACCGAGTCTCAAACCGAACGTGTGTTATCAAGCGAAGATGCTGAA 1073
Query 1081 TGCAGCATTTGTCTATGTGCTTATGAAGATGGAGTAGAACTAAGGGAGCTTCCTTGTAGA 1140
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1074 TGCAGCATTTGTCTATGTGCTTATGAAGATGGAGTAGAACTAAGAGAGCTTCCTTGTAGA 1133
Query 1141 CACCATTTTCACAGTTTATGTGTAGACAAATGGCTAAGGATCAACGCTACTTGCCCTCTC 1200
|| |||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 1134 CATCATTTTCACAGTTTATGTGTAGACAAATGGCTAAGGATCAACGCAACTTGTCCTCTC 1193
Query 1201 TGCAAATTCAATATCCTCAAAAATGGTGAACCTAGTGGCAGTGAACAAGTGTGATGAGGA 1260
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1194 TGCAAATTCAATATCCTCAAAAATGGTGAACCTAGTGGCAGTGAACAAGTGTGAGGAGGA 1253
Query 1261 GAAAGATTTTGCTGTTCAATCTTTGTGGAATGTGATGAGCTCATCA-TCATCATTTACTT 1319
||||||||||||||||||||||||||||||||| | | || | | | | | || || |
Sbjct 1254 GAAAGATTTTGCTGTTCAATCTTTGTGGAATGT--T-ACCTTAAAAGTTACC-TTAACAT 1309
Query 1320 CAA-AGCCTG---TTTGTTCTTTTGACCATTACAGAGGAAAGAACAAGAAAGAAGACCTT 1375
||| | | | ||| |||||| |||||||||||||||||||||||||| ||||||| |
Sbjct 1310 CAACATCATTACCTTTATTCTTT-GACCATTACAGAGGAAAGAACAAGAA-GAAGACCGT 1367
Query 1376 GAGATTTGTTTTGAGATGAAGCTGCACATCTTGTCTTTTTGGATATGATATTTGTAAATG 1435
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1368 GAGATTTGTTTTGAGATGAAGCTGCACATCTTGTCTTTTTGGATATGATATTGGTAAATG 1427
Query 1436 CAATAAGTATATATAGTTCGGTTGGAAGATGTTATTCATCGAGTCAGTTGTGATTTTAGC 1495
||||||||||||||||||||||||||| |||| |||||||||||||| ||||||||||||
Sbjct 1428 CAATAAGTATATATAGTTCGGTTGGAAAATGTAATTCATCGAGTCAGGTGTGATTTTAGC 1487
Query 1496 CGTTTGGTGTTTTT-AAGCAACGGATTAATTAGATTAATGTACGGTGATGAACCATGCAT 1554
||||||| |||||| ||||||| ||| |||||||||||| ||||||||||| ||||| |
Sbjct 1488 CGTTTGG-GTTTTTTAAGCAACCGATAAATTAGATTAATTTACGGTGATGATCCATG--T 1544
Query 1555 GTTTATATTGCTGTGACGTCATTGTAGTGAGGTGAAAAagagagagagagaTCACTATTT 1614
|| ||||||||||||| ||||||||||||||||||||||||| |||| | |||||||||
Sbjct 1545 -TT-ATATTGCTGTGACTTCATTGTAGTGAGGTGAAAAAGAGAAAGAG-G-TCACTATTT 1600
Query 1615 AATCAGAATTCACATTC 1631
|||||||||||||||||
Sbjct 1601 AATCAGAATTCACATTC 1617
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61134843225
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5