BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G61180.1 Length=1631 Score E Sequences producing significant alignments: (Bits) Value Ahg486593 jgi|Araly1|486593|fgenesh2_kg.5__2585__AT3G61180.1 2412 0.0 > Ahg486593 jgi|Araly1|486593|fgenesh2_kg.5__2585__AT3G61180.1 Length=1617 Score = 2412 bits (1306), Expect = 0.0 Identities = 1531/1637 (94%), Gaps = 26/1637 (2%) Strand=Plus/Plus Query 1 CTCGAAACCTAGAATCATCCACCCCGCAAAGTCGACAGATTTCCAGCGAATTCAAACCCG 60 ||| ||||||||||||||||| |||||||||||| ||||||||||||||||||||||||| Sbjct 1 CTCAAAACCTAGAATCATCCA-CCCGCAAAGTCGGCAGATTTCCAGCGAATTCAAACCCG 59 Query 61 ATCCATCGAGATTCTGGATCAACCCGATTACCCAAGATCCAATCTTTCTAATTGATGAAT 120 | |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 60 ACCCATCGAGATTCTGGATCAACCCGATTACCCAAGATCCAATCTTTCTATTTGATGAAT 119 Query 121 CAATCGATCCCTTCTACCGTATCTTCTTCTCCGACGACTGATACGATGGACGCTTCGCCG 180 ||||||||||||| |||||| |||||||||||| ||| ||||||||||||| ||||||| Sbjct 120 CAATCGATCCCTTTTACCGTCTCTTCTTCTCCGGGGACGGATACGATGGACGTTTCGCCG 179 Query 181 CTTCTTGGCCGGAACAGACGTAACCGCCCACGGTCCTCTCAGCCGATTCGTGGCGCGGCG 240 |||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||| Sbjct 180 CTTCTTGGCCGGAACAGACGTAACCGCCCACGGTCCTCACAGCCGCTTCGTGGCGCGGCG 239 Query 241 TCGAGACTTCTCCGCCGTGCTAGCAACCGCCGGATGATGCTCCGTGAGCCCTCCGTTCGA 300 |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| || Sbjct 240 TCGAGACTTCTCCGCCGTGCTAGCAACCGCCGGATGATGCTCCGTGAGCCATCCGTTAGA 299 Query 301 GTCCGTGAGGTGGCGGCTGAGCAGCTTGAGGAACGGCAGAGTCAATGGGCTTACTCTAAA 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 300 GTCCGTGAGGTGGCGGCTGAGCAGCTTGAGGAACGGCAGAGTCAATGGGCTTACTCGAAA 359 Query 361 CCCATTATAGTTCTCGATATACTTTGGAATTTCCTATTTGTGATTGTTTCAATCGCGATT 420 |||||||| |||||||||||||||||||||||| | |||||||||||||||||||||||| Sbjct 360 CCCATTATTGTTCTCGATATACTTTGGAATTTCGTCTTTGTGATTGTTTCAATCGCGATT 419 Query 421 CTAGGGTTTAGTTCTGATGAAGATCCTGATGTTCCTCTTAGGTTGTGGATCATTGGGTAT 480 ||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| Sbjct 420 CTAGGGTTTAGTTCTGAAGAAGATCCTGATGTTCCTCTTAGGTTGTGGATTATTGGGTAT 479 Query 481 AATGTTCAGTGTTTGTTTCATGTTGGATGTGTCATTGCTGAGTATAAACGTCGCCGTGTT 540 ||| ||||||||||| |||||||||| ||||| ||||||||||||||||||||||||| Sbjct 480 AATTTTCAGTGTTTGCTTCATGTTGGTTGTGTAATTGCTGAGTATAAACGTCGCCGTGAA 539 Query 541 GCTAATTCTCCTCCTCCTAGTGGTGAAGATTCCTCCAATCACGAGTCTCTTAGCGGAAGT 600 ||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| Sbjct 540 GCTAATTCTCCTCCT---AGTGGTGAAGATTCCTCCAATCACGAATCTCTTAGCGGAAGT 596 Query 601 GAAGATGAATCTGATGGCTATAGCATTAACAACACTGATGATGATGACCATGGAACTAGT 660 ||||| |||||||||||||||||||||||| || |||||||||| ||||||||||||| Sbjct 597 GAAGACGAATCTGATGGCTATAGCATTAACGACGCTGATGATGA---CCATGGAACTAGT 653 Query 661 TTCACTAAGCACCTTGAATCTGCGAATACCATGTTCTCTTTTGTGTGGTGGATCATCGGG 720 ||||| ||||||||||||||||||||||| |||||||||||||| ||||||||||||||| Sbjct 654 TTCACCAAGCACCTTGAATCTGCGAATACTATGTTCTCTTTTGTCTGGTGGATCATCGGG 713 Query 721 TTTTACTGGGTGACGGCTGATACCGAGGCACTAGCTCAATCTTCGCCACAACTCTACTGG 780 ||||||||||| |||||||||||||||||||||||||| |||||||| |||||||||||| Sbjct 714 TTTTACTGGGTCACGGCTGATACCGAGGCACTAGCTCAGTCTTCGCCTCAACTCTACTGG 773 Query 781 CTCTGTGTTGCATTCCTTGCGTTTGATGTTATGTTTGTTGTCATTTGCGTAGCGGTTGCT 840 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 774 CTCTGTGTTGCATTCCTTGCGTTTGATGTTATGTTTGTTGTCATTTGCGTTGCGGTTGCT 833 Query 841 AGTCTTATTGGTATTGCTGTTTGTTGCTGTTTACCTTGCATCATTGCGATCTTGTACGCA 900 ||||| ||||||||||||||||| |||||||||||||||||||| || |||||||||||| Sbjct 834 AGTCTGATTGGTATTGCTGTTTGCTGCTGTTTACCTTGCATCATCGCAATCTTGTACGCA 893 Query 901 TTAGCAGATCAGGAAGGTGCACCGGATGAAGAGATAGAGAGGCTTTTAAAATTCAAGTTT 960 ||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| Sbjct 894 TTAGCAGATCAGGAAGGTGCACCCGATGAAGAGATAGAAAGGCTTTTAAAATTCAAGTTC 953 Query 961 CTCACAGTAAAGAATTCTGAGAAAGTGAATGGCGAAATACGGGAAACTCAAGGAGGGATA 1020 ||| |||||||||||| |||||||||||||||||||| ||||||||||||||||||||| Sbjct 954 CTCGTAGTAAAGAATTCCGAGAAAGTGAATGGCGAAATCCGGGAAACTCAAGGAGGGATA 1013 Query 1021 ATGACTGGATTAGATACCGAGTCTCAAACCGAACGTATGTTATTAAGCGAAGATGCTGAA 1080 ||| ||||||||| |||||||||||||||||||||| |||||| |||||||||||||||| Sbjct 1014 ATGGCTGGATTAGGTACCGAGTCTCAAACCGAACGTGTGTTATCAAGCGAAGATGCTGAA 1073 Query 1081 TGCAGCATTTGTCTATGTGCTTATGAAGATGGAGTAGAACTAAGGGAGCTTCCTTGTAGA 1140 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 1074 TGCAGCATTTGTCTATGTGCTTATGAAGATGGAGTAGAACTAAGAGAGCTTCCTTGTAGA 1133 Query 1141 CACCATTTTCACAGTTTATGTGTAGACAAATGGCTAAGGATCAACGCTACTTGCCCTCTC 1200 || |||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| Sbjct 1134 CATCATTTTCACAGTTTATGTGTAGACAAATGGCTAAGGATCAACGCAACTTGTCCTCTC 1193 Query 1201 TGCAAATTCAATATCCTCAAAAATGGTGAACCTAGTGGCAGTGAACAAGTGTGATGAGGA 1260 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 1194 TGCAAATTCAATATCCTCAAAAATGGTGAACCTAGTGGCAGTGAACAAGTGTGAGGAGGA 1253 Query 1261 GAAAGATTTTGCTGTTCAATCTTTGTGGAATGTGATGAGCTCATCA-TCATCATTTACTT 1319 ||||||||||||||||||||||||||||||||| | | || | | | | | || || | Sbjct 1254 GAAAGATTTTGCTGTTCAATCTTTGTGGAATGT--T-ACCTTAAAAGTTACC-TTAACAT 1309 Query 1320 CAA-AGCCTG---TTTGTTCTTTTGACCATTACAGAGGAAAGAACAAGAAAGAAGACCTT 1375 ||| | | | ||| |||||| |||||||||||||||||||||||||| ||||||| | Sbjct 1310 CAACATCATTACCTTTATTCTTT-GACCATTACAGAGGAAAGAACAAGAA-GAAGACCGT 1367 Query 1376 GAGATTTGTTTTGAGATGAAGCTGCACATCTTGTCTTTTTGGATATGATATTTGTAAATG 1435 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 1368 GAGATTTGTTTTGAGATGAAGCTGCACATCTTGTCTTTTTGGATATGATATTGGTAAATG 1427 Query 1436 CAATAAGTATATATAGTTCGGTTGGAAGATGTTATTCATCGAGTCAGTTGTGATTTTAGC 1495 ||||||||||||||||||||||||||| |||| |||||||||||||| |||||||||||| Sbjct 1428 CAATAAGTATATATAGTTCGGTTGGAAAATGTAATTCATCGAGTCAGGTGTGATTTTAGC 1487 Query 1496 CGTTTGGTGTTTTT-AAGCAACGGATTAATTAGATTAATGTACGGTGATGAACCATGCAT 1554 ||||||| |||||| ||||||| ||| |||||||||||| ||||||||||| ||||| | Sbjct 1488 CGTTTGG-GTTTTTTAAGCAACCGATAAATTAGATTAATTTACGGTGATGATCCATG--T 1544 Query 1555 GTTTATATTGCTGTGACGTCATTGTAGTGAGGTGAAAAagagagagagagaTCACTATTT 1614 || ||||||||||||| ||||||||||||||||||||||||| |||| | ||||||||| Sbjct 1545 -TT-ATATTGCTGTGACTTCATTGTAGTGAGGTGAAAAAGAGAAAGAG-G-TCACTATTT 1600 Query 1615 AATCAGAATTCACATTC 1631 ||||||||||||||||| Sbjct 1601 AATCAGAATTCACATTC 1617 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 61134843225 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5