BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G61182.1

Length=261
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg899080 jgi|Araly1|899080|Al_scaffold_0005_3046                    322    8e-88


> Ahg899080 jgi|Araly1|899080|Al_scaffold_0005_3046
Length=225

 Score =  322 bits (174),  Expect = 8e-88
 Identities = 207/223 (93%), Gaps = 2/223 (1%)
 Strand=Plus/Plus

Query  31   ATGACTAAAGCCATCACTCTTGCTATCTTTATGGTCGTCCTCGTTTTAGGGATGGTGACA  90
            ||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||| |
Sbjct  1    ATGACTAAAACCATCACTCTTGCTATCTTCATGGTCGTCCTCGTTTTAGGGATGGTGATA  60

Query  91   AAGGAAACGCAAGGAGAAGAAAAACAGTGTTATGATTATCTTTTAACACCGCAGGAAAAC  150
            ||||||||||||||||||||||| ||||||||||| ||| ||| ||||||||||||||||
Sbjct  61   AAGGAAACGCAAGGAGAAGAAAATCAGTGTTATGAATATATTTCAACACCGCAGGAAAAC  120

Query  151  TGCGAAGGTTTGATATGCGCACATGAATGTACTATGCAGCATGGTGGAAACGGCGTGTGT  210
            |||||||||||| | || |||||||| ||||||||| |||||||||||||||||||||||
Sbjct  121  TGCGAAGGTTTGGTGTGTGCACATGACTGTACTATGAAGCATGGTGGAAACGGCGTGTGT  180

Query  211  GTTGATACTACAAGCACGGTC-TGCATCTGCACTTATGACTGC  252
            ||||||||||||||||||  | ||||||||||||||||| |||
Sbjct  181  GTTGATACTACAAGCACGA-CATGCATCTGCACTTATGATTGC  222



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 9088806118


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5