BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G61182.1 Length=261 Score E Sequences producing significant alignments: (Bits) Value Ahg899080 jgi|Araly1|899080|Al_scaffold_0005_3046 322 8e-88 > Ahg899080 jgi|Araly1|899080|Al_scaffold_0005_3046 Length=225 Score = 322 bits (174), Expect = 8e-88 Identities = 207/223 (93%), Gaps = 2/223 (1%) Strand=Plus/Plus Query 31 ATGACTAAAGCCATCACTCTTGCTATCTTTATGGTCGTCCTCGTTTTAGGGATGGTGACA 90 ||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||| | Sbjct 1 ATGACTAAAACCATCACTCTTGCTATCTTCATGGTCGTCCTCGTTTTAGGGATGGTGATA 60 Query 91 AAGGAAACGCAAGGAGAAGAAAAACAGTGTTATGATTATCTTTTAACACCGCAGGAAAAC 150 ||||||||||||||||||||||| ||||||||||| ||| ||| |||||||||||||||| Sbjct 61 AAGGAAACGCAAGGAGAAGAAAATCAGTGTTATGAATATATTTCAACACCGCAGGAAAAC 120 Query 151 TGCGAAGGTTTGATATGCGCACATGAATGTACTATGCAGCATGGTGGAAACGGCGTGTGT 210 |||||||||||| | || |||||||| ||||||||| ||||||||||||||||||||||| Sbjct 121 TGCGAAGGTTTGGTGTGTGCACATGACTGTACTATGAAGCATGGTGGAAACGGCGTGTGT 180 Query 211 GTTGATACTACAAGCACGGTC-TGCATCTGCACTTATGACTGC 252 |||||||||||||||||| | ||||||||||||||||| ||| Sbjct 181 GTTGATACTACAAGCACGA-CATGCATCTGCACTTATGATTGC 222 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 9088806118 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5