BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G61185.1

Length=373
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg939159 jgi|Araly1|939159|scaffold_503350.1                        276    9e-74


> Ahg939159 jgi|Araly1|939159|scaffold_503350.1
Length=229

 Score =  276 bits (149),  Expect = 9e-74
 Identities = 186/203 (92%), Gaps = 6/203 (3%)
 Strand=Plus/Plus

Query  169  ttttattattat-tattaGGGATGGTGACTAAGGAAACACAAGCAGAAGGAGAAAAAGTG  227
            ||| ||| || | |||||||||||||||| ||||||||| |||||||||||||||||  |
Sbjct  1    TTTCATTTTTTTCTATTAGGGATGGTGACCAAGGAAACAAAAGCAGAAGGAGAAAAA--G  58

Query  228  TGTGTCATCATAATCTTATAACACCAACCGAAGGCTGTAAAGCTTCGCCGTGTGATGCTA  287
            |||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct  59   TGTGTCATCATAATCTTATAACACCAACCGAAGGCTGTGAAGCTTCGACGTGTGATGCTA  118

Query  288  TGTGTGCTTCAAGGTTTAAGGGAG---TAGGCGGGTGTTCTAAAACCGATCAGTTTACCT  344
            ||||||||||||||||||||||||   |||||||||||||||||||| || | |||||||
Sbjct  119  TGTGTGCTTCAAGGTTTAAGGGAGGAGTAGGCGGGTGTTCTAAAACCAATAAATTTACCT  178

Query  345  GCAACTGCATGTTTATTTGCAAA  367
            ||| |||||||||||||||||||
Sbjct  179  GCACCTGCATGTTTATTTGCAAA  201



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 13316300561


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5