BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G61190.1
Length=923
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486595 jgi|Araly1|486595|fgenesh2_kg.5__2587__AT3G61190.1 780 0.0
> Ahg486595 jgi|Araly1|486595|fgenesh2_kg.5__2587__AT3G61190.1
Length=746
Score = 780 bits (422), Expect = 0.0
Identities = 579/650 (89%), Gaps = 29/650 (4%)
Strand=Plus/Plus
Query 80 ATGACAAAAACATTGGAGATTGATTTGAGATCAGCAGAAGGGCTTAAGCTAAACCGGAGA 139
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1 ATGACAAAAACATTGGAGATTGATTTGAGATCAGCAGAAGGGCTTAAGCTTAACCGGAGA 60
Query 140 CCCATCAAGAAAAAGACTTTC-GCCGTCGTAAAAATCGACGAGAAATGTCGAAAATCTAA 198
|||||||||||||||||| || | |||||||| ||||||||||||| ||||| |||||
Sbjct 61 CCCATCAAGAAAAAGACTCTCTG-CGTCGTAACGATCGACGAGAAATCTCGAACCTCTAA 119
Query 199 TCTTGACGAATCGAGAAGAAGCAATCCTACATGGAACTATAAATCAGAGATGCCCATCAA 258
|||||| ||||| |||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 120 TCTTGATGAATCAAGAAGAAGCAATCCAACATGGAACTATAAATCAGAGATACCCATCAA 179
Query 259 TGGTAATGAACAGTTTATCTTCATTGAGGTATTTTATCGAACAGGTTCTGGGCATGATaa 318
|||||||| |||||||||| |||||||||||||||||||||||||||||||||| | ||
Sbjct 180 TGGTAATGTACAGTTTATCACCATTGAGGTATTTTATCGAACAGGTTCTGGGCATCAGAA 239
Query 319 aaaaaTCGGAGAAGCTAAAATCCCAACGAATGATTTCATGGGAAGGTATTCACCTGAAGG 378
|||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 240 AAAAATCGGAGAAGCTAAAATCCCAACGAAGGATTTCATGGGAAGGTATTCACCAGAAGG 299
Query 379 TCACTTAAACTTCTTGAGCTATAGATTGAGAGATGAGTTTGGTGATAAGTGTGGGATCGT 438
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 TCATTTAAACTTCTTGAGCTATAGATTGAGAGATGAGTTTGGTGATAAGTGTGGGATCGT 359
Query 439 CAATCTTTCGATTTTGGTTAAATCGG-ATC--C--C-ACCAGAGATTACGGCGCGTGTTC 492
||||||||||||||| ||||||||| | | | | | |||||||| || || |||||
Sbjct 360 CAATCTTTCGATTTTAGTTAAATCGTCAACGACGGCGATAAGAGATTATGGAGCATGTTC 419
Query 493 GTCCCAAGCGGCGGTTACTGGTTTGTGGAGGCCGAGATTAGAGACGGCATCGATTGATGG 552
||| |||||||||| |||||| |||||||| ||||||| |||||| | |||||||||||
Sbjct 420 GTCGCAAGCGGCGGATACTGGGTTGTGGAGACCGAGATCGGAGACGCCGTCGATTGATGG 479
Query 553 ATACGGTGGCCGGACTGTTACCGGAGTTCCGGTTTGGGGTCTGTATCAACGCCAATTTTA 612
||| |||||||||||||||||||||||||||||||||||| |||||||||| ||||| ||
Sbjct 480 ATATGGTGGCCGGACTGTTACCGGAGTTCCGGTTTGGGGTGTGTATCAACGGCAATTCTA 539
Query 613 AAATCttttttttttggggggggATGCACATATTATTAATTCTTCGTCTTTGTTCCATAG 672
| ||| | ||||| || | | | |||||||||||||||||||||||||
Sbjct 540 A---CTTCTCTTTTT--------AT--A--T-T-ATTAATTCTTCGTCTTTGTTCCATAT 582
Query 673 AT---T-TTCCCAATTTGGAATTGAGGAACAAAGATGTGTGATTAATTTT 718
|| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct 583 ATAGATCTTCCCAATTTGGAATTGAGGAACAAAGATGTGTGATTAATTTT 632
Score = 75.0 bits (40), Expect = 9e-13
Identities = 42/43 (98%), Gaps = 0/43 (0%)
Strand=Plus/Plus
Query 880 TTGTGAGTTATTGTAACGTTACTTGCGTGGTGATTTGTTGCGG 922
||||| |||||||||||||||||||||||||||||||||||||
Sbjct 704 TTGTGCGTTATTGTAACGTTACTTGCGTGGTGATTTGTTGCGG 746
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34234379466
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5