BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G61198.1
Length=622
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471166 jgi|Araly1|471166|fgenesh2_kg.1__1120__AT1G10522.1 320 7e-87
Ahg950051 jgi|Araly1|950051|scaffold_801938.1 267 9e-71
Ahg917054 jgi|Araly1|917054|Al_scaffold_0008_1805 211 4e-54
Ahg925059 jgi|Araly1|925059|scaffold_200620.1 152 3e-36
> Ahg471166 jgi|Araly1|471166|fgenesh2_kg.1__1120__AT1G10522.1
Length=954
Score = 320 bits (173), Expect = 7e-87
Identities = 190/198 (96%), Gaps = 1/198 (1%)
Strand=Plus/Plus
Query 1 GGATCTGTTCTATAGGCTCGTACCTCTGTTTCCTTGATTTCTAAGGAGACAGGCCCTTAA 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 6 GGATCTGTTCTATAGGCTCGTACCTCTGTTTCCTTGATTTCTAAGGAGACAGGCCCTTAA 65
Query 61 CCCTGGTTGATGAACCATGGCCGTGCGATCAGAGCGTGATTGACGGCTACGATCGTCTTA 120
||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||
Sbjct 66 CCCTGGTTGATGAACCATGACCGTGCGATCAGAGCGTGATTAACGGCTACGATCGTCTTC 125
Query 121 GGACGCATCTGGTGCTGTAGAGGATCGTTACTCGGCTCGGTTCTACCTTGCCGGGGTGGT 180
||||||||| ||||||||||||||||||||||||||| ||| || |||||||||||||||
Sbjct 126 GGACGCATCCGGTGCTGTAGAGGATCGTTACTCGGCTAGGT-CTTCCTTGCCGGGGTGGT 184
Query 181 TGCACGGCGGTCTGACAG 198
|||||||||||||||||
Sbjct 185 CGCACGGCGGTCTGACAG 202
> Ahg950051 jgi|Araly1|950051|scaffold_801938.1
Length=328
Score = 267 bits (144), Expect = 9e-71
Identities = 157/163 (96%), Gaps = 2/163 (1%)
Strand=Plus/Minus
Query 37 ATTTCT-AAGGAGACAGGCCCTTAACCCTGGTTGATGAACCATGGCCGTGCGATCAGAGC 95
|||||| || |||||||||||||||||||||||||||||||||| |||||| ||||||||
Sbjct 328 ATTTCTCAA-GAGACAGGCCCTTAACCCTGGTTGATGAACCATGACCGTGCTATCAGAGC 270
Query 96 GTGATTGACGGCTACGATCGTCTTAGGACGCATCTGGTGCTGTAGAGGATCGTTACTCGG 155
|||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||
Sbjct 269 GTGATTGACGGCTACGATCGTCTTCGGACGCATCCGGTGCTGTAGAGGATCGTTACTCGG 210
Query 156 CTCGGTTCTACCTTGCCGGGGTGGTTGCACGGCGGTCTGACAG 198
|||||||||||||||||||||||||||||||||||||||||||
Sbjct 209 CTCGGTTCTACCTTGCCGGGGTGGTTGCACGGCGGTCTGACAG 167
> Ahg917054 jgi|Araly1|917054|Al_scaffold_0008_1805
Length=744
Score = 211 bits (114), Expect = 4e-54
Identities = 128/135 (95%), Gaps = 0/135 (0%)
Strand=Plus/Minus
Query 57 TTAACCCTGGTTGATGAACCATGGCCGTGCGATCAGAGCGTGATTGACGGCTACGATCGT 116
||||||||||||||||||||||| ||||||||||||||||||||| ||||| ||||| ||
Sbjct 744 TTAACCCTGGTTGATGAACCATGACCGTGCGATCAGAGCGTGATTAACGGCCACGATTGT 685
Query 117 CTTAGGACGCATCTGGTGCTGTAGAGGATCGTTACTCGGCTCGGTTCTACCTTGCCGGGG 176
||| ||| |||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 684 CTTCGGATGCATCTGGTGCTGTAGAGGATCGTTACTCGGCTCAGTTCTACCTTGCCGGGG 625
Query 177 TGGTTGCACGGCGGT 191
|||||||||||||||
Sbjct 624 TGGTTGCACGGCGGT 610
> Ahg925059 jgi|Araly1|925059|scaffold_200620.1
Length=241
Score = 152 bits (82), Expect = 3e-36
Identities = 131/154 (85%), Gaps = 6/154 (4%)
Strand=Plus/Minus
Query 1 GGATCTGTTCTATAGGCTCGTACCTCTGTTTCCTTGATTTCTAAGGAGACAGGCCCTTAA 60
||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 230 GGATCTGTTCTATAGTCTCGTACATCTGTTTCCTTGATTTCTAAGGAGACAGGCCCTTAA 171
Query 61 CCCTGGTTGATGAACCATGGCCGTGCGATCAGAGCGTGATTGACGGCTACGATCGTCT-T 119
||||||||||||| || |||||| || | ||| |||||||||||| ||| |||| |
Sbjct 170 ACCTGGTTGATGAATCAAAGCCGTGTGACCTGAGTGTGATTGACGGCG--GATTGTCTCT 113
Query 120 A-GGACGCATCTGGTGCTGTAGAGGATCGTTACT 152
||| || || ||||||||||||||| ||||
Sbjct 112 TCGGA-GCCCCTC-TGCTGTAGAGGATCGCTACT 81
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22759381449
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5