BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G61200.1
Length=751
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486596 jgi|Araly1|486596|fgenesh2_kg.5__2588__AT3G61200.1 970 0.0
> Ahg486596 jgi|Araly1|486596|fgenesh2_kg.5__2588__AT3G61200.1
Length=685
Score = 970 bits (525), Expect = 0.0
Identities = 615/659 (93%), Gaps = 4/659 (1%)
Strand=Plus/Plus
Query 37 AAAAATGAATTGGGCAAAATTCCGTGAAACTGGGAGCCCAGAAGACACCGAC-ATGTCTT 95
|||||||||||||| ||||||||||||||||||| || |||| |||||| || ||||| |
Sbjct 1 AAAAATGAATTGGGAAAAATTCCGTGAAACTGGGTGCTCAGACGACACC-ACAATGTCGT 59
Query 96 CTACTCCGATCTCGTCCGACACGACGGCGGTGTCCAAAGTGATCGATCCAAATTACGTAT 155
|| ||||||||||||| || |||||||| || ||||||| |||||||||||||||||||
Sbjct 60 CTTCTCCGATCTCGTCAGAGACGACGGCTGTATCCAAAGAAATCGATCCAAATTACGTAT 119
Query 156 TAATGGTTGCTGATTTCTTCAAAGCTATTTCCCCAGACGAATCTTGCAACGATTTCACCT 215
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 120 TAATGGTTGCTGATTTCTTCAAAGCTATTTCCCCAGACTCCTCTTGCAACGATTTCACCT 179
Query 216 CTTTCGACTCTTTCTCCGTCTTATTTCAAAACAATACCAGAGCTCTCTCCATCGCACGCG 275
|||||||||||||||| ||||||||||||| ||| |||||||||||||||||| ||||||
Sbjct 180 CTTTCGACTCTTTCTCTGTCTTATTTCAAAGCAACACCAGAGCTCTCTCCATCTCACGCG 239
Query 276 GCCGTGTCTCGTGCTCCGTCACCGTCACGCCAGGCATATCCAATTTCTTTAAGGGGTTAC 335
||||||||||||||||||||| |||||||||||||||| ||||||| ||||| |||||||
Sbjct 240 GCCGTGTCTCGTGCTCCGTCATCGTCACGCCAGGCATAGCCAATTTTTTTAATGGGTTAC 299
Query 336 ATGGAGGAGCGGTGGCATCAATTGCAGAGAGAGTAGCGATGGCTTGTGTGAAAACTGTTG 395
|||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 300 ATGGAGGAGCAGTGGCATCAATTGCAGAGAGAATAGCGATGGCTTGTGTGAAAACTGTTG 359
Query 396 TGTCTGAAGACAAACATCTGTTCATTGGTGAATTGAGTATGTCTTATCTCTCTTCTGCTC 455
|||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||
Sbjct 360 TGTCTGAAGACAAACAGCTGTTCCTTGGTGAATTGAGTATGTCTTATCTCTCTTCTGCTC 419
Query 456 CTATTTCGAGTGAATTGTTGGTGGAGGGAACGGTGGTGAGGACTGGGAGGAATCTGTCGG 515
||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 420 CTATTTCGAGTGAATTGGTGGTGGAGGGATCGGTGGTGAGGACTGGGAGGAATCTGTCGG 479
Query 516 TGGTGACTGTTGAGTTCAAGATCAAGGAGACCATGAAAGTCACTTACCTATCTCGTGCTA 575
| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 TTGTGATTGTTGAGTTCAAGATCAAGGAGACCATGAAAGTCACTTACCTATCTCGTGCTA 539
Query 576 CTTTTTACCATTCTCCCATCTCTAAGCTTTAAAGCTTTTTCACATGCTCAGTGATCTTTT 635
| ||||||||||||| |||||| ||||||||| ||||||| |||||||||| ||||||||
Sbjct 540 CATTTTACCATTCTCTCATCTCAAAGCTTTAA-GCTTTTTGACATGCTCAGAGATCTTTT 598
Query 636 GCTGAT-CTATTTACATTCTTCTGTTCAATAAAACAAGATTCTGTATACAGATATTACT 693
| |||| || ||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 599 GTTGATTCTTTTTACATTCTTCTATTCAATAAAACAAGATTCTGTATACAGATTTTACT 657
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27677237742
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5