BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G61210.1
Length=1044
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486597 jgi|Araly1|486597|fgenesh2_kg.5__2589__AT3G61210.1 1306 0.0
> Ahg486597 jgi|Araly1|486597|fgenesh2_kg.5__2589__AT3G61210.1
Length=854
Score = 1306 bits (707), Expect = 0.0
Identities = 771/802 (96%), Gaps = 3/802 (0%)
Strand=Plus/Plus
Query 52 aaaaaTGGCTCAATTGGCTGCTTTGTCGGGAAAGCAAGCTGATGAGTACTTGAACGCAAG 111
||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 AAAGATGGCTCAATTGGTTGCTTTGTCGGGAAAGCAAGCTGATGAGTACTTGAACGCAAG 60
Query 112 GCCGAAATATCCTACAATATGGTACAAAGTGTTGGCTGGTCGAACCAGCAACCATAAGGT 171
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GCCGAAATATCCTACAATATGGTACAAAGTGTTGGCTGGTCGAACCAGCAACCATAAGGT 120
Query 172 GGCTTGGGATGTTGGGACCGGCAACGGTCAGGCTGCTATTGGGGTCGCTGAGTACTACCA 231
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GGCTTGGGATGTTGGGACCGGCAACGGTCAGGCTGCTATTGGGGTCGCTGAGTACTACCA 180
Query 232 GAAAGTGGTGGCAACTGATATAAATGAATCACAACTCCAACGTGCAATGAAGCACCCAAA 291
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GAAAGTGGTGGCAACTGATATAAATGAATCACAACTCCAACGTGCAATGAAGCACCCAAA 240
Query 292 AGTCACTTACTATCACACTCCATCATCAATGTCCGACGACGATCTAGTGACTCTACTCGG 351
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 AGTCACTTACCATCACACTCCATCATCAATGTCCGACGACGATCTAGTGACTCTACTCGG 300
Query 352 TGGAGAAAACTCCATAGATATCATAATAGCCGCTCAAGCTCTTCACTACTTCGACCTAAA 411
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 301 TGGAGAAAACTCCATAGATATCATAATAGCTGCTCAAGCTCTTCACTACTTCGACCTTAA 360
Query 412 GAGATTCTACCCCATAGTGAAACGTGTTCTTCGTAAACAAGGCGGTATCATCGTAGTTTG 471
|||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||
Sbjct 361 GAGATTCTACCCCATAGTGAAACGTGTTCTTCGTAAACAAGGTGGTATCATCGCAGTTTG 420
Query 472 GGTTTACAACGATCTCATCATCACCCCAAAGGTTGATTCCATCATGAAACGTCTTGTGGA 531
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 421 GGTTTACAACGATCTCATCATCACCCCAAAGGTTGATTCCATCATGAAACGTCTGGTGGA 480
Query 532 TTCAACATTACCTTACAGAAACCCGACTATGAATTTGGCGTTTGATGGTTATAAAACAAT 591
|||||||||||||| ||||||||||||||||||||| |||||||||||||||| ||||||
Sbjct 481 TTCAACATTACCTTTCAGAAACCCGACTATGAATTTAGCGTTTGATGGTTATAGAACAAT 540
Query 592 AGAGTTTCCTTTTAAAAACATTAGGATGGGGACTCAAGGAAGGCCTAAAGCTCTTGACAT 651
||||||||||||||||||||| || |||||||||||||||||||||||||||||||| ||
Sbjct 541 AGAGTTTCCTTTTAAAAACATAAGAATGGGGACTCAAGGAAGGCCTAAAGCTCTTGATAT 600
Query 652 CCCACACATGCTTTCGCT-AGATGGATTTCTAGGGTTCTTAAAATCATGGCAGCCTCTAG 710
||||||| ||||||||| | |||||||| ||||||| ||||||||||||||||||||||
Sbjct 601 TCCACACAAGCTTTCGCTTA-ATGGATTTTTAGGGTTTTTAAAATCATGGCAGCCTCTAG 659
Query 711 TGAAAGCAAAGGAGCAAGGAGAGGATCTTTTAACTTCTTATATGATTGATGAGTTTAAGG 770
|||| ||||||||||||||||| |||||||||||||||| ||||||||||||||||||||
Sbjct 660 TGAAGGCAAAGGAGCAAGGAGAAGATCTTTTAACTTCTTGTATGATTGATGAGTTTAAGG 719
Query 771 AAGCTTGGGGTGATGATGAACAAGTCAAGGATGTTCACTACAAGGCATTTATGCTTGCAG 830
|||||||||||||||| ||||||||||||||||| ||||||||||| |||||||| |
Sbjct 720 AAGCTTGGGGTGATGACAAACAAGTCAAGGATGTTTTCTACAAGGCATACATGCTTGCTG 779
Query 831 GGAAACTTTAGGTAATTAATAT 852
|||||||||||||||||| |||
Sbjct 780 GGAAACTTTAGGTAATTA-TAT 800
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38847252423
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5