BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G61220.2
Length=1024
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486598 jgi|Araly1|486598|fgenesh2_kg.5__2590__AT3G61220.1 1463 0.0
Ahg481274 jgi|Araly1|481274|fgenesh2_kg.4__334__AT2G24190.2 1092 0.0
> Ahg486598 jgi|Araly1|486598|fgenesh2_kg.5__2590__AT3G61220.1
Length=962
Score = 1463 bits (792), Expect = 0.0
Identities = 925/985 (94%), Gaps = 26/985 (3%)
Strand=Plus/Plus
Query 10 aaaaaaaGAAACGCCAATTATTGATATTCTTTGTCTAAAACCCAGAAA-TAAAA-AGGTT 67
|||||||||||||||||||||||||| |||||| || ||||||| ||| |||| |||||
Sbjct 1 AAAAAAAGAAACGCCAATTATTGATACTCTTTGCCTGAAACCCA-AAAGAAAAATAGGTT 59
Query 68 CGAAAATGGCAGAGGAAACTCCAAGATTGTTTAATGGTTTTTGTAGATATGCTGTAGTTA 127
|||||||||||||||||||||| | ||||||||||||||||
Sbjct 60 CGAAAATGGCAGAGGAAACTCC-----------A----------AGATATGCTGTAGTTA 98
Query 128 CTGGAGCAAACAGAGGGATTGGATTTGAGATATGCAGACAATTAGCTAGTGAAGGGATTA 187
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 99 CTGGAGCAAACAGAGGGATTGGATTTGAGATATGCAGACAATTAGCTAGTCAAGGGATTA 158
Query 188 GAGTTGTTTTGACCTCTAGAGACGA-AAACAGAGGACTTGAAGCTGTTGAGACACTGAAG 246
||||||||||||| |||||||| || ||| ||||||||||||||||||||||||||||||
Sbjct 159 GAGTTGTTTTGACATCTAGAGATGAGAAA-AGAGGACTTGAAGCTGTTGAGACACTGAAG 217
Query 247 AAAGAGCTTGAGATTTCTGATCAAAGCCTTCTTTTTCATCAGCTTGATGTCGCTGATCCT 306
||||||||| |||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 218 AAAGAGCTTCAGATTTCTGATCAAAGCCTTGTTTTTCATCAGCTTGATGTCTCTGATCCT 277
Query 307 GCTAGTATCACATCTCTTGCTGAGTTTGTGAAAACCCAATTTGGGAAACTCGATATCTTG 366
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 278 GCTAGTATCACATCTCTTGCTGAGTTTGTGAAAACCCTATTTGGGAAACTCGATATCTTG 337
Query 367 GTCAATAATGCAGGGATTGGTGGTATAATCACTGATGCTGAAGCTTTAAGAGCTGGGGCA 426
||||||||||||||| ||||||||||||||||||||||||| ||| ||||||||||||||
Sbjct 338 GTCAATAATGCAGGGGTTGGTGGTATAATCACTGATGCTGATGCTCTAAGAGCTGGGGCA 397
Query 427 GGGAAAGAAGGTTTCAAGTGGGATGAAATCATCACGGAGACTTATGAGTTAACTGAAGAA 486
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 398 GGGAAAGAAGGTTTCAAGTGGGATGAAATCATCACGGAGACTTATGAGTTAGCTGAAGAA 457
Query 487 TGCATCAAGATAAACTACTATGGACCAAAGAGAATGTGTGAGGCGTTTATTCCTCTTTTG 546
||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 458 TGCATCAAGATTAACTATTATGGACCAAAGAGAATGTGTGAGGCGTTTATTCCTCTTTTG 517
Query 547 AAGTTATCTGATTCACCAAGAATCGTCAATGTATCATCCTCCATGGGTCAACTAAAGAAT 606
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 518 AAGTTATCTGATTCACCAAGAATCGTCAATGTATCATCCTCCATGGGTCTACTAAAGAAT 577
Query 607 GTACTAAACGAATGGGCAAAAGGAATCCTGAGCGACGCAGAGAATCTCACTGAGGAAAGA 666
||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 578 GTACTAAACGAATGGGCAAAAGGAATCCTGAGCGATGCAGAGAATCTCACGGAGGAAAGA 637
Query 667 ATCGACCAAGTGATCAACCAACTTCTCAATGATTTCAAAGAAGGTACAGTTAAGGaaaaa 726
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 638 ATCGACCAAGTGATCAACCAACTTCTCAATGATTTCAAAGAAGGTACAGTTAAGGAAAAA 697
Query 727 aaCTGGGCTAAATTTATGTCGGCTTATGTGGTTTCAAAGGCAAGTTTGAATGGTTACACG 786
|||||||||||||||||||| ||||| |||||||| ||||| ||||||||||||||||||
Sbjct 698 AACTGGGCTAAATTTATGTCAGCTTACGTGGTTTCGAAGGCCAGTTTGAATGGTTACACG 757
Query 787 AGGGTCCTGGCGAAGAAACATCCCGAGTTTCGCGTAAACGCTGTGTGTCCTGGATTTGTT 846
||| || ||||||||| |||||||||||||||||||||||| ||||||||||||||||||
Sbjct 758 AGGATCTTGGCGAAGATACATCCCGAGTTTCGCGTAAACGCGGTGTGTCCTGGATTTGTT 817
Query 847 AAGACAGATATGAACTTCAAGACTGGAGTCTTGTCTGTGGAAGAAGGAGCTTCAAGTCCT 906
||||| ||||||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 818 AAGACGGATATGAACTTCAAGACTGGAGTTTTGTCTGTGGAAGAAGGAGCATCAAGTCCT 877
Query 907 GTGAGGTTGGCTTTACTTCCGCATCAAGAAACTCCTTCTGGTTGTTTCTTTAGTCGCAAG 966
|||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 878 GTGAGGTTGGCTTTGCTTCCGCATCAAGAAACTCCTTCTGGTTGTTTCTTTAGCCGCAAG 937
Query 967 CAAGTTTCAGAATTCTGAATCTTCT 991
|||||||||||||||||||| ||||
Sbjct 938 CAAGTTTCAGAATTCTGAATTTTCT 962
> Ahg481274 jgi|Araly1|481274|fgenesh2_kg.4__334__AT2G24190.2
Length=1010
Score = 1092 bits (591), Expect = 0.0
Identities = 818/927 (88%), Gaps = 18/927 (2%)
Strand=Plus/Plus
Query 102 TGGTTTTTGTAGATATGCTGTAGTTACTGGAGCAAACAGAGGGATTGGATTTGAGATATG 161
||| ||||||||||||||| |||||||||||| || ||||| |||||||||||||||||
Sbjct 68 TGGGTTTTGTAGATATGCTATAGTTACTGGAGGGAATAGAGGAATTGGATTTGAGATATG 127
Query 162 CAGACAATTAGCTAGTGAAGGGATTAGAGTTGTTTTGACCTCTAGAGACGAAA-ACAGAG 220
|||||||||||| | |||||||||| |||||| |||| |||||||| |||| | ||||
Sbjct 128 CAGACAATTAGCAAACCAAGGGATTAGGGTTGTTCTGACATCTAGAGATGAAAGA-AGAG 186
Query 221 GACTTGAAGCTGTTGAGACACTGAAGAAAGAGCTTGAGATTTCTGATCAAAGC-CTTCTT 279
|||||||||||||||||||| ||||||||||||||| |||||||||||||||| | | |
Sbjct 187 GACTTGAAGCTGTTGAGACATTGAAGAAAGAGCTTGGGATTTCTGATCAAAGCAC-TGTC 245
Query 280 TTTCATCAGCTTGATGTCGCTGATCCTGCTAGTATCACATCTCTTGCTGAGTTTGTGAAA 339
|||||||||||||||||| ||||||| ||||||||| |||||||||||||||||||||||
Sbjct 246 TTTCATCAGCTTGATGTCTCTGATCCAGCTAGTATCTCATCTCTTGCTGAGTTTGTGAAA 305
Query 340 ACCCAATTTGGGAAACTCGATATCTTGGTCAATAATGCAGGGATTGGTGGTATAATCACT 399
|||||||| || ||||||||||||||| | |||||||||||| |||||||| ||||||||
Sbjct 306 ACCCAATTCGGAAAACTCGATATCTTGATTAATAATGCAGGGGTTGGTGGTGTAATCACT 365
Query 400 GATGCTGAAGCTTTAAGAGCTGGGGCAGGGAAAGAAGGTTTCAAGTGGGATGAAA-TCAT 458
|||| ||| ||||||||||||||| | ||||||||||||||||| ||||| |||| | ||
Sbjct 366 GATGTTGATGCTTTAAGAGCTGGGACTGGGAAAGAAGGTTTCAAATGGGAGGAAACT-AT 424
Query 459 CACGGAGACTTATGAGTTAACTGAAGAATGCATCAAGATAAACTACTATGGACCAAAGAG 518
||| ||||| |||||| || ||||||||||||||||||| |||| ||||||||||||||
Sbjct 425 CACAGAGACGTATGAGCTAGCTGAAGAATGCATCAAGATTAACTGTTATGGACCAAAGAG 484
Query 519 AATGTGTGAGGCGTTTATTCCTCTTTTGAAGTTATCTGATTCACCAAGAATCGTCAATGT 578
|||||||||| ||||||||||||||||| ||||||||||||| ||||||||||| |||||
Sbjct 485 AATGTGTGAGTCGTTTATTCCTCTTTTGCAGTTATCTGATTCTCCAAGAATCGTTAATGT 544
Query 579 ATCATCCTCCATGGGTCAACTAAAGAATGTACTAAACGAATGGGCAAAAGGAATCCTGAG 638
|||||| | ||||||||||||||||||| |||||||||||||||||||||| ||||||||
Sbjct 545 ATCATCATTCATGGGTCAACTAAAGAATTTACTAAACGAATGGGCAAAAGGGATCCTGAG 604
Query 639 CGACGCAGAGAATCTCACTGAGGAAAGAATCGACCAAGTGATCAACCAACTTCTCAATGA 698
|||||| ||||||||||| | |||||||||||| ||||||||||||||||||||||||||
Sbjct 605 CGACGCTGAGAATCTCACGGTGGAAAGAATCGATCAAGTGATCAACCAACTTCTCAATGA 664
Query 699 TTTCAAAGAAGGTACAGTTAAGGaaaaaa-aCTGGGCTAAATTTATGTCGGCTTATGTGG 757
| | || |||| ||| |||||| | |||| | ||||||||| | ||||| || || || |
Sbjct 665 TCTGAAGGAAGATACGGTTAAG-ACAAAAGATTGGGCTAAAGTCATGTCTGCCTACGTTG 723
Query 758 TTTC-AAAGGCAAGTTTGAATGGTTACACGAGGGTCCTGGCGAAGAAACATCCCGAGTTT 816
|||| |||| | |||||||||||||||||||| || |||| ||||||||||||||||||
Sbjct 724 TTTCGAAAGCCG-GTTTGAATGGTTACACGAGGATCTTGGCAAAGAAACATCCCGAGTTT 782
Query 817 CGCGTAAACGCTGTGTGTCCTGGATTTGTTAAGACAGATATGAACTTCAAGACTGGAGTC 876
|| |||||| | || |||||||||||||||||||| |||||||| ||||| ||||||||
Sbjct 783 CGTGTAAACTCGGTTTGTCCTGGATTTGTTAAGACGGATATGAATTTCAAAACTGGAGTT 842
Query 877 TTGTCTGTGGAAGAAGGAGCTTCAAGTCCTGTGAGGTTGGCTTTACTTCCGCATCAAGAA 936
|||||||||||||||||||| ||||||||||| ||||| ||||| ||||| |||| ||||
Sbjct 843 TTGTCTGTGGAAGAAGGAGCATCAAGTCCTGTAAGGTTAGCTTTGCTTCCACATCGAGAA 902
Query 937 ACTCCTTCTGGTTGTTTCTTT-AGTCGCAAGCAAGTTTCAGAATTCTGAA-TCTTCTTTT 994
|||||||||||||||||||| | ||| || ||||||||||| ||||||| |||| | |
Sbjct 903 TCTCCTTCTGGTTGTTTCTTTGA-TCGTAAACAAGTTTCAGAGTTCTGAAATCTT-TGT- 959
Query 995 GTGTG-AGA--ATAATAAGCCAAAAAT 1018
||| | | | ||||||||||||||||
Sbjct 960 GTGGGGATAGTATAATAAGCCAAAAAT 986
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38084794083
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5