BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G61230.1
Length=912
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486599 jgi|Araly1|486599|fgenesh2_kg.5__2591__AT3G61230.1 1264 0.0
> Ahg486599 jgi|Araly1|486599|fgenesh2_kg.5__2591__AT3G61230.1
Length=888
Score = 1264 bits (684), Expect = 0.0
Identities = 805/861 (93%), Gaps = 17/861 (2%)
Strand=Plus/Plus
Query 51 TCCAACTCTTTCGTAATTTGAaagaagaagaagaagagaTACCAATGGCGGCGTTTACAG 110
|||| ||||||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 35 TCCATCTCTTTCGTGATTTGAAAGAAGAAGAAGAAGAGATAACAATGGCGGCGTTTACAG 94
Query 111 GGACAAC-AGACAAATGCAAGGCGTGTGACAAGACGGTATACGTTATGGACTTGATGACT 169
|||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 95 GGAC-ACTAGACAAATGCAAGGCGTGTGACAAGACGGTATACGTTATGGACTTGATGACA 153
Query 170 TTGGAAGGAATGCCTTATCACAAGTCATGCTTCAGGTGCAGCCATTGCAATGGCACTCTC 229
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 154 TTGGAAGGAATGCCTTATCACAAGTCATGCTTCAGGTGCAGCCATTGCAATGGCACTCTC 213
Query 230 GTGATATGTAACTACTCATCCATGGATGGAGTTTTGTATTGCAAGACCCATTTTGAACAG 289
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 214 GTGATATGTAACTACTCATCCATGGATGGAGTTTTGTATTGCAAGACCCATTTTGAACAG 273
Query 290 CTCTTCAAAGAATCTGGAAATTTCAGCAAGAATTTCCAAACAGCTGGAAAGACCGAGAAA 349
||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 274 CTCTTCAAAGAATCTGGAAATTTCAGCAAAAATTTCCAAACAGCAGGAAAGACCGAGAAA 333
Query 350 TCGAATGATGCGACGAAGGCTCCAAACAGGTTATCATCCTTCTTTAGCGGCACACAAGAC 409
|||||||| |||||| |||||||||||||||||| || ||||||||||| |||||||||
Sbjct 334 TCGAATGAAACGACGAGGGCTCCAAACAGGTTATCTTCGTTCTTTAGCGGAACACAAGAC 393
Query 410 AAATGTGCAGCTTGTAAGAAAACAGTTTATCCTCTAGAGAAGATGACAATGGAAGGAGAA 469
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 394 AAATGTGCAGCTTGTAAGAAAACAGTTTATCCTCTAGAGAAAATGACAATGGAAGGAGAA 453
Query 470 TCTTACCACAAGACTTGCTTCAGATGTGCACATAGTGGTTGTCCATTAACACATTCTTCA 529
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 454 TCTTACCACAAGACTTGCTTCAGATGTGCACATAGTGGTTGTCCATTAACACATTCTTCA 513
Query 530 TATGCTGCTCTCGATGGCGTCCTTTACTGTAAGGTCCACTTCAGCCAGCTTTTCCTTGAG 589
||||||||||||||||| |||| |||||||||||||| ||||| |||||||||||||||
Sbjct 514 TATGCTGCTCTCGATGGTATCCTCTACTGTAAGGTCCATTTCAGTCAGCTTTTCCTTGAG 573
Query 590 AAAGGTAATTACAATCATGTCCTCCAAGCCGCGGCTAACCACCGTCGCTC-GACGGCTGA 648
||||||||||||||||||||||||||||| |||||||||||||||||| | | |||||||
Sbjct 574 AAAGGTAATTACAATCATGTCCTCCAAGCTGCGGCTAACCACCGTCGCACAG-CGGCTGA 632
Query 649 GGAAGACAAAACCGAACCCAAAGAAGATGAAGCAAACCCTACAGAAGAAGAAACTTCTGA 708
||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||
Sbjct 633 GGAAGACAAAACCGAACCCAAAGAAAATGAAGCAAACCCTACAGAAGAAGACACTTCTGA 692
Query 709 TGCAGCAGCTGAAGAACATGAATCCTAAGAAATATCCGGGAGTTCCTTTTGTGAAATATA 768
|||||||| |||||||||||| || | |||| || ||||||||||| ||||||||||
Sbjct 693 TGCAGCAGGTGAAGAACATGAGTCGTCCTAAAT--CCAGGAGTTCCTTT-GTGAAATATA 749
Query 769 TATAATCATAAATTGTTAAAGAG-ATA-ATTTCTTAACTAATGCAATGAAGTAGACTCAA 826
|| | |||||||||||||||||| | | |||| |||| || |||||||||||||||||||
Sbjct 750 TA-A-TCATAAATTGTTAAAGAGCACATATTTTTTAAGTACTGCAATGAAGTAGACTCAA 807
Query 827 ATTTTGTT-TAGTTTCTTCTTATGGAACTATATATTATTCTGT--TT--GTAAAGTAATT 881
|||||||| | ||||||| |||||||||| |||||||||| | || ||||||| |||
Sbjct 808 ATTTTGTTCT-GTTTCTTTTTATGGAACTGCATATTATTCTATAATTTTGTAAAGTGATT 866
Query 882 ATATTCAAGTTTATGAGTAAT 902
||||||||||||||||||||
Sbjct 867 TTATTCAAGTTTATGAGTAAT 887
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33815027379
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5