BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G61230.1 Length=912 Score E Sequences producing significant alignments: (Bits) Value Ahg486599 jgi|Araly1|486599|fgenesh2_kg.5__2591__AT3G61230.1 1264 0.0 > Ahg486599 jgi|Araly1|486599|fgenesh2_kg.5__2591__AT3G61230.1 Length=888 Score = 1264 bits (684), Expect = 0.0 Identities = 805/861 (93%), Gaps = 17/861 (2%) Strand=Plus/Plus Query 51 TCCAACTCTTTCGTAATTTGAaagaagaagaagaagagaTACCAATGGCGGCGTTTACAG 110 |||| ||||||||| |||||||||||||||||||||||||| |||||||||||||||||| Sbjct 35 TCCATCTCTTTCGTGATTTGAAAGAAGAAGAAGAAGAGATAACAATGGCGGCGTTTACAG 94 Query 111 GGACAAC-AGACAAATGCAAGGCGTGTGACAAGACGGTATACGTTATGGACTTGATGACT 169 |||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 95 GGAC-ACTAGACAAATGCAAGGCGTGTGACAAGACGGTATACGTTATGGACTTGATGACA 153 Query 170 TTGGAAGGAATGCCTTATCACAAGTCATGCTTCAGGTGCAGCCATTGCAATGGCACTCTC 229 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 154 TTGGAAGGAATGCCTTATCACAAGTCATGCTTCAGGTGCAGCCATTGCAATGGCACTCTC 213 Query 230 GTGATATGTAACTACTCATCCATGGATGGAGTTTTGTATTGCAAGACCCATTTTGAACAG 289 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 214 GTGATATGTAACTACTCATCCATGGATGGAGTTTTGTATTGCAAGACCCATTTTGAACAG 273 Query 290 CTCTTCAAAGAATCTGGAAATTTCAGCAAGAATTTCCAAACAGCTGGAAAGACCGAGAAA 349 ||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| Sbjct 274 CTCTTCAAAGAATCTGGAAATTTCAGCAAAAATTTCCAAACAGCAGGAAAGACCGAGAAA 333 Query 350 TCGAATGATGCGACGAAGGCTCCAAACAGGTTATCATCCTTCTTTAGCGGCACACAAGAC 409 |||||||| |||||| |||||||||||||||||| || ||||||||||| ||||||||| Sbjct 334 TCGAATGAAACGACGAGGGCTCCAAACAGGTTATCTTCGTTCTTTAGCGGAACACAAGAC 393 Query 410 AAATGTGCAGCTTGTAAGAAAACAGTTTATCCTCTAGAGAAGATGACAATGGAAGGAGAA 469 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 394 AAATGTGCAGCTTGTAAGAAAACAGTTTATCCTCTAGAGAAAATGACAATGGAAGGAGAA 453 Query 470 TCTTACCACAAGACTTGCTTCAGATGTGCACATAGTGGTTGTCCATTAACACATTCTTCA 529 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 454 TCTTACCACAAGACTTGCTTCAGATGTGCACATAGTGGTTGTCCATTAACACATTCTTCA 513 Query 530 TATGCTGCTCTCGATGGCGTCCTTTACTGTAAGGTCCACTTCAGCCAGCTTTTCCTTGAG 589 ||||||||||||||||| |||| |||||||||||||| ||||| ||||||||||||||| Sbjct 514 TATGCTGCTCTCGATGGTATCCTCTACTGTAAGGTCCATTTCAGTCAGCTTTTCCTTGAG 573 Query 590 AAAGGTAATTACAATCATGTCCTCCAAGCCGCGGCTAACCACCGTCGCTC-GACGGCTGA 648 ||||||||||||||||||||||||||||| |||||||||||||||||| | | ||||||| Sbjct 574 AAAGGTAATTACAATCATGTCCTCCAAGCTGCGGCTAACCACCGTCGCACAG-CGGCTGA 632 Query 649 GGAAGACAAAACCGAACCCAAAGAAGATGAAGCAAACCCTACAGAAGAAGAAACTTCTGA 708 ||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| Sbjct 633 GGAAGACAAAACCGAACCCAAAGAAAATGAAGCAAACCCTACAGAAGAAGACACTTCTGA 692 Query 709 TGCAGCAGCTGAAGAACATGAATCCTAAGAAATATCCGGGAGTTCCTTTTGTGAAATATA 768 |||||||| |||||||||||| || | |||| || ||||||||||| |||||||||| Sbjct 693 TGCAGCAGGTGAAGAACATGAGTCGTCCTAAAT--CCAGGAGTTCCTTT-GTGAAATATA 749 Query 769 TATAATCATAAATTGTTAAAGAG-ATA-ATTTCTTAACTAATGCAATGAAGTAGACTCAA 826 || | |||||||||||||||||| | | |||| |||| || ||||||||||||||||||| Sbjct 750 TA-A-TCATAAATTGTTAAAGAGCACATATTTTTTAAGTACTGCAATGAAGTAGACTCAA 807 Query 827 ATTTTGTT-TAGTTTCTTCTTATGGAACTATATATTATTCTGT--TT--GTAAAGTAATT 881 |||||||| | ||||||| |||||||||| |||||||||| | || ||||||| ||| Sbjct 808 ATTTTGTTCT-GTTTCTTTTTATGGAACTGCATATTATTCTATAATTTTGTAAAGTGATT 866 Query 882 ATATTCAAGTTTATGAGTAAT 902 |||||||||||||||||||| Sbjct 867 TTATTCAAGTTTATGAGTAAT 887 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 33815027379 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5